RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	GYS1	P13807	737 aa		12.06	□□□□□ -0.48
SYNE2-222	ENST00000556725	IFNL2	Q8IZJ0	200 aa		12.06	□□□□□ -0.48
SYNE2-222	ENST00000556725	KLRG1	Q96E93	195 aa		12.06	□□□□□ -0.48
SYNE2-222	ENST00000556725	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	12.06	□□□□□ -0.48
SYNE2-222	ENST00000556725	BRCA1	P38398	1863 aa	Known RBP	12.06	□□□□□ -0.48
SYNE2-222	ENST00000556725	JMY	Q8N9B5	988 aa		12.05	□□□□□ -0.48
SYNE2-222	ENST00000556725	RRAGC	Q9HB90	399 aa		12.05	□□□□□ -0.48
SYNE2-222	ENST00000556725	CCDC87	Q9NVE4	849 aa		12.05	□□□□□ -0.48
SYNE2-222	ENST00000556725	WASHC2A	Q641Q2	1341 aa		12.05	□□□□□ -0.48
SYNE2-222	ENST00000556725	C4A	P0C0L4	1744 aa		12.04	□□□□□ -0.48
SYNE2-222	ENST00000556725	RPS6KA4	O75676	772 aa		12.04	□□□□□ -0.48
SYNE2-222	ENST00000556725	RFC4	P35249	363 aa		12.04	□□□□□ -0.48
SYNE2-222	ENST00000556725	RC3H1	Q5TC82	1133 aa	Known RBP	12.04	□□□□□ -0.48
SYNE2-222	ENST00000556725	C16orf71	Q8IYS4	520 aa	Predicted RBP	12.04	□□□□□ -0.48
SYNE2-222	ENST00000556725	PARP3	Q9Y6F1	533 aa		12.04	□□□□□ -0.48
SYNE2-222	ENST00000556725	KCP	Q6ZWJ8	1503 aa		12.04	□□□□□ -0.48
SYNE2-222	ENST00000556725	KDR	P35968	1356 aa		12.04	□□□□□ -0.48
SYNE2-222	ENST00000556725	MYH14	Q7Z406	1995 aa	Known RBP	12.03	□□□□□ -0.48
SYNE2-222	ENST00000556725	POLK	Q9UBT6	870 aa		12.03	□□□□□ -0.48
SYNE2-222	ENST00000556725	SRP68	Q9UHB9	627 aa	Known RBP	12.03	□□□□□ -0.48
SYNE2-222	ENST00000556725	ARFGEF1	Q9Y6D6	1849 aa		12.02	□□□□□ -0.48
SYNE2-222	ENST00000556725	FSTL1	Q12841	308 aa		12.02	□□□□□ -0.49
SYNE2-222	ENST00000556725	EIF4A2	Q14240	407 aa	Known RBP	12.02	□□□□□ -0.49
SYNE2-222	ENST00000556725	RNF181	Q9P0P0	153 aa		12.02	□□□□□ -0.49
SYNE2-222	ENST00000556725	PIM2	Q9P1W9	311 aa		12.02	□□□□□ -0.49
SYNE2-222	ENST00000556725	COL5A3	P25940	1745 aa	Predicted RBP	12.01	□□□□□ -0.49
SYNE2-222	ENST00000556725	ERVV-2	B6SEH9	535 aa		12.01	□□□□□ -0.49
SYNE2-222	ENST00000556725	CHRNA5	P30532	468 aa		12.01	□□□□□ -0.49
SYNE2-222	ENST00000556725	DDR1	Q08345	913 aa		12.01	□□□□□ -0.49
SYNE2-222	ENST00000556725	FKBP8	Q14318	412 aa		12.01	□□□□□ -0.49
SYNE2-222	ENST00000556725	DCAF5	Q96JK2	942 aa		12.01	□□□□□ -0.49
SYNE2-222	ENST00000556725	CNTNAP4	Q9C0A0	1308 aa		12.01	□□□□□ -0.49
SYNE2-222	ENST00000556725	SBF1	O95248	1867 aa		12.01	□□□□□ -0.49
SYNE2-222	ENST00000556725	ANKRD26	Q9UPS8	1709 aa		12	□□□□□ -0.49
SYNE2-222	ENST00000556725	SPDYE4	A6NLX3	237 aa		12	□□□□□ -0.49
SYNE2-222	ENST00000556725	PTCD1	O75127	700 aa	Known RBP	12	□□□□□ -0.49
SYNE2-222	ENST00000556725	DALRD3	Q5D0E6	543 aa	Known RBP	12	□□□□□ -0.49
SYNE2-222	ENST00000556725	TNS4	Q8IZW8	715 aa		12	□□□□□ -0.49
SYNE2-222	ENST00000556725	TNNT2	P45379	298 aa	Predicted RBP	11.99	□□□□□ -0.49
SYNE2-222	ENST00000556725	KDM2B	Q8NHM5	1336 aa		11.99	□□□□□ -0.49
SYNE2-222	ENST00000556725	PLEKHG2	Q9H7P9	1386 aa		11.99	□□□□□ -0.49
SYNE2-222	ENST00000556725	ZNF831	Q5JPB2	1677 aa		11.99	□□□□□ -0.49
SYNE2-222	ENST00000556725	CRKL	P46109	303 aa	Known RBP	11.98	□□□□□ -0.49
SYNE2-222	ENST00000556725	PRELP	P51888	382 aa		11.98	□□□□□ -0.49
SYNE2-222	ENST00000556725	CABP4	P57796	275 aa		11.98	□□□□□ -0.49
SYNE2-222	ENST00000556725	RASSF7	Q02833	373 aa		11.98	□□□□□ -0.49
SYNE2-222	ENST00000556725	CDCA8	Q53HL2	280 aa		11.98	□□□□□ -0.49
SYNE2-222	ENST00000556725	KDM6A	O15550	1401 aa	Predicted RBP	11.97	□□□□□ -0.49
SYNE2-222	ENST00000556725	USP42	Q9H9J4	1324 aa	Known RBP	11.97	□□□□□ -0.49
SYNE2-222	ENST00000556725	TM4SF1	P30408	202 aa		11.97	□□□□□ -0.49
SYNE2-222	ENST00000556725	SCUBE2	Q9NQ36	999 aa		11.97	□□□□□ -0.49
SYNE2-222	ENST00000556725	POLRMT	O00411	1230 aa	Known RBP	11.96	□□□□□ -0.49
SYNE2-222	ENST00000556725	HSP90AB1	P08238	724 aa	Known RBP	11.96	□□□□□ -0.49
SYNE2-222	ENST00000556725	PLEKHO1	Q53GL0	409 aa	Predicted RBP	11.96	□□□□□ -0.49
SYNE2-222	ENST00000556725	ZNF530	Q6P9A1	599 aa	Predicted RBP	11.96	□□□□□ -0.49
SYNE2-222	ENST00000556725	INTS5	Q6P9B9	1019 aa	Known RBP	11.96	□□□□□ -0.49
SYNE2-222	ENST00000556725	NFATC2IP	Q8NCF5	419 aa		11.96	□□□□□ -0.49
SYNE2-222	ENST00000556725	SMC1B	Q8NDV3	1235 aa		11.96	□□□□□ -0.49
SYNE2-222	ENST00000556725	TNRC6C	Q9HCJ0	1690 aa	Known RBP	11.95	□□□□□ -0.5
SYNE2-222	ENST00000556725	HSPA1A	P0DMV8	641 aa	Known RBP	11.95	□□□□□ -0.5
SYNE2-222	ENST00000556725	HSPA1B	P0DMV9	641 aa	Known RBP	11.95	□□□□□ -0.5
SYNE2-222	ENST00000556725	MTHFS	P49914	203 aa		11.95	□□□□□ -0.5
SYNE2-222	ENST00000556725	USPL1	Q5W0Q7	1092 aa		11.94	□□□□□ -0.5
SYNE2-222	ENST00000556725	AEBP1	Q8IUX7	1158 aa		11.94	□□□□□ -0.5
SYNE2-222	ENST00000556725	FAM163A	Q96GL9	167 aa	Predicted RBP	11.94	□□□□□ -0.5
SYNE2-222	ENST00000556725	ADAMTS7	Q9UKP4	1686 aa		11.94	□□□□□ -0.5
SYNE2-222	ENST00000556725	CCDC88A	Q3V6T2	1871 aa		11.93	□□□□□ -0.5
SYNE2-222	ENST00000556725	GLTPD2	A6NH11	291 aa		11.93	□□□□□ -0.5
SYNE2-222	ENST00000556725	VEGFA	P15692	232 aa	Predicted RBP	11.93	□□□□□ -0.5
SYNE2-222	ENST00000556725	ATN1	P54259	1190 aa	Predicted RBP	11.93	□□□□□ -0.5
SYNE2-222	ENST00000556725	TJP1	Q07157	1748 aa		11.93	□□□□□ -0.5
SYNE2-222	ENST00000556725	POTEC	B2RU33	542 aa		11.92	□□□□□ -0.5
SYNE2-222	ENST00000556725	LMNB1	P20700	586 aa		11.92	□□□□□ -0.5
SYNE2-222	ENST00000556725	DNAJC10	Q8IXB1	793 aa		11.92	□□□□□ -0.5
SYNE2-222	ENST00000556725	POLR3GL	Q9BT43	218 aa		11.92	□□□□□ -0.5
SYNE2-222	ENST00000556725	AFDN	P55196	1824 aa	Known RBP	11.92	□□□□□ -0.5
SYNE2-222	ENST00000556725	ZPR1	O75312	459 aa		11.91	□□□□□ -0.5
SYNE2-222	ENST00000556725	NFIX	Q14938	502 aa		11.91	□□□□□ -0.5
SYNE2-222	ENST00000556725	AMOT	Q4VCS5	1084 aa		11.91	□□□□□ -0.5
SYNE2-222	ENST00000556725	C1orf141	Q5JVX7	400 aa		11.91	□□□□□ -0.5
SYNE2-222	ENST00000556725	POTEF	A5A3E0	1075 aa		11.9	□□□□□ -0.5
SYNE2-222	ENST00000556725	BCL2L12	Q9HB09	334 aa		11.9	□□□□□ -0.5
SYNE2-222	ENST00000556725	LGR6	Q9HBX8	967 aa		11.9	□□□□□ -0.5
SYNE2-222	ENST00000556725	SOS1	Q07889	1333 aa	Predicted RBP	11.89	□□□□□ -0.51
SYNE2-222	ENST00000556725	NFKBIE	O00221	500 aa		11.89	□□□□□ -0.51
SYNE2-222	ENST00000556725	SERPINB2	P05120	415 aa		11.89	□□□□□ -0.51
SYNE2-222	ENST00000556725	CYP19A1	P11511	503 aa	Predicted RBP	11.89	□□□□□ -0.51
SYNE2-222	ENST00000556725	SLC39A6	Q13433	755 aa		11.89	□□□□□ -0.51
SYNE2-222	ENST00000556725	TTLL6	Q8N841	843 aa		11.89	□□□□□ -0.51
SYNE2-222	ENST00000556725	ZC3H4	Q9UPT8	1303 aa	Known RBP	11.88	□□□□□ -0.51
SYNE2-222	ENST00000556725	SCN11A	Q9UI33	1791 aa		11.88	□□□□□ -0.51
SYNE2-222	ENST00000556725	SULT6B1	Q6IMI4	303 aa		11.88	□□□□□ -0.51
SYNE2-222	ENST00000556725	C2CD5	Q86YS7	1000 aa		11.88	□□□□□ -0.51
SYNE2-222	ENST00000556725	NARF	Q9UHQ1	456 aa		11.88	□□□□□ -0.51
SYNE2-222	ENST00000556725	NRXN2	Q9P2S2	1712 aa		11.87	□□□□□ -0.51
SYNE2-222	ENST00000556725	ZBTB1	Q9Y2K1	713 aa		11.87	□□□□□ -0.51
SYNE2-222	ENST00000556725	CARMIL3	Q8ND23	1372 aa		11.87	□□□□□ -0.51
SYNE2-222	ENST00000556725	TIAM2	Q8IVF5	1701 aa		11.86	□□□□□ -0.51
SYNE2-222	ENST00000556725		H0YIN7	160 aa		11.86	□□□□□ -0.51
SYNE2-222	ENST00000556725	BICDL1	Q6ZP65	573 aa		11.86	□□□□□ -0.51

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