RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 KIF13BQ9NQT8 1826 aa13.98□□□□□ -0.17
SCFD1-220ENST00000556486 PKD1L3Q7Z443 1732 aa13.98□□□□□ -0.17
SCFD1-220ENST00000556486 CGNL1Q0VF96 1302 aa13.97□□□□□ -0.17
SCFD1-220ENST00000556486 SSFA2P28290 1259 aa13.97□□□□□ -0.17
SCFD1-220ENST00000556486 SMARCC1Q92922 1105 aaPredicted RBP13.97□□□□□ -0.17
SCFD1-220ENST00000556486 KIF20BQ96Q89 1820 aa13.97□□□□□ -0.17
SCFD1-220ENST00000556486 KIF24Q5T7B8 1368 aa13.96□□□□□ -0.17
SCFD1-220ENST00000556486 LOC102724428A0A0B4J2F2 783 aa13.96□□□□□ -0.17
SCFD1-220ENST00000556486 FYB1O15117 783 aa13.96□□□□□ -0.17
SCFD1-220ENST00000556486 SIK1P57059 783 aa13.96□□□□□ -0.17
SCFD1-220ENST00000556486 TMF1P82094 1093 aa13.96□□□□□ -0.17
SCFD1-220ENST00000556486 ZNF467Q7Z7K2 595 aaPredicted RBP13.96□□□□□ -0.17
SCFD1-220ENST00000556486 ASAP1Q9ULH1 1129 aa13.96□□□□□ -0.17
SCFD1-220ENST00000556486 NSD3Q9BZ95 1437 aa13.96□□□□□ -0.18
SCFD1-220ENST00000556486 KCPQ6ZWJ8 1503 aa13.95□□□□□ -0.18
SCFD1-220ENST00000556486 DPEP1P16444 411 aa13.95□□□□□ -0.18
SCFD1-220ENST00000556486 ATP6V1AP38606 617 aa13.95□□□□□ -0.18
SCFD1-220ENST00000556486 BRCA1P38398 1863 aaKnown RBP13.95□□□□□ -0.18
SCFD1-220ENST00000556486 FCHSD2O94868 740 aa13.94□□□□□ -0.18
SCFD1-220ENST00000556486 TRIM26Q12899 539 aaPredicted RBP13.94□□□□□ -0.18
SCFD1-220ENST00000556486 CDCA8Q53HL2 280 aa13.94□□□□□ -0.18
SCFD1-220ENST00000556486 C9orf131Q5VYM1 1079 aa13.94□□□□□ -0.18
SCFD1-220ENST00000556486 C16orf71Q8IYS4 520 aaPredicted RBP13.94□□□□□ -0.18
SCFD1-220ENST00000556486 TNS4Q8IZW8 715 aa13.94□□□□□ -0.18
SCFD1-220ENST00000556486 KLRG1Q96E93 195 aa13.94□□□□□ -0.18
SCFD1-220ENST00000556486 PCDHB13Q9Y5F0 798 aa13.94□□□□□ -0.18
SCFD1-220ENST00000556486 EMILIN1Q9Y6C2 1016 aa13.94□□□□□ -0.18
SCFD1-220ENST00000556486 C4AP0C0L4 1744 aa13.93□□□□□ -0.18
SCFD1-220ENST00000556486 PPM1GO15355 546 aaPredicted RBP13.93□□□□□ -0.18
SCFD1-220ENST00000556486 BRPF1P55201 1214 aaPredicted RBP13.93□□□□□ -0.18
SCFD1-220ENST00000556486 TMOD3Q9NYL9 352 aa13.93□□□□□ -0.18
SCFD1-220ENST00000556486 TRPC6Q9Y210 931 aa13.93□□□□□ -0.18
SCFD1-220ENST00000556486 INSRP06213 1382 aa13.93□□□□□ -0.18
SCFD1-220ENST00000556486 FLT4P35916 1363 aa13.93□□□□□ -0.18
SCFD1-220ENST00000556486 C10orf71Q711Q0 1435 aa13.92□□□□□ -0.18
SCFD1-220ENST00000556486 ASTLQ6HA08 431 aaPredicted RBP13.92□□□□□ -0.18
SCFD1-220ENST00000556486 PDAP1Q13442 181 aaKnown RBP13.91□□□□□ -0.18
SCFD1-220ENST00000556486 IFNL1Q8IU54 200 aa13.91□□□□□ -0.18
SCFD1-220ENST00000556486 RBM46Q8TBY0 533 aaKnown RBP13.91□□□□□ -0.18
SCFD1-220ENST00000556486 RRAGCQ9HB90 399 aa13.91□□□□□ -0.18
SCFD1-220ENST00000556486 ARFGEF1Q9Y6D6 1849 aa13.9□□□□□ -0.18
SCFD1-220ENST00000556486 ATMINO43313 823 aaPredicted RBP13.9□□□□□ -0.18
SCFD1-220ENST00000556486 TGFB2P61812 414 aa13.9□□□□□ -0.18
SCFD1-220ENST00000556486 ATG3Q9NT62 314 aa13.9□□□□□ -0.18
SCFD1-220ENST00000556486 NCAPD2Q15021 1401 aa13.9□□□□□ -0.19
SCFD1-220ENST00000556486 CLSPNQ9HAW4 1339 aa13.9□□□□□ -0.19
SCFD1-220ENST00000556486 TRAPPC3LQ5T215 181 aa13.89□□□□□ -0.19
SCFD1-220ENST00000556486 JMYQ8N9B5 988 aa13.89□□□□□ -0.19
SCFD1-220ENST00000556486 SLC4A9Q96Q91 983 aa13.89□□□□□ -0.19
SCFD1-220ENST00000556486 CCDC87Q9NVE4 849 aa13.89□□□□□ -0.19
SCFD1-220ENST00000556486 RNF181Q9P0P0 153 aa13.89□□□□□ -0.19
SCFD1-220ENST00000556486 COL5A3P25940 1745 aaPredicted RBP13.88□□□□□ -0.19
SCFD1-220ENST00000556486 KCNA3P22001 575 aa13.88□□□□□ -0.19
SCFD1-220ENST00000556486 HMGB2P26583 209 aaKnown RBP13.88□□□□□ -0.19
SCFD1-220ENST00000556486 ARHGEF1Q92888 912 aaKnown RBP13.88□□□□□ -0.19
SCFD1-220ENST00000556486 SPG7Q9UQ90 795 aa13.88□□□□□ -0.19
SCFD1-220ENST00000556486 RTCBQ9Y3I0 505 aaKnown RBP13.88□□□□□ -0.19
SCFD1-220ENST00000556486 TNRC6CQ9HCJ0 1690 aaKnown RBP13.88□□□□□ -0.19
SCFD1-220ENST00000556486 ANKRD26Q9UPS8 1709 aa13.87□□□□□ -0.19
SCFD1-220ENST00000556486 SBF1O95248 1867 aa13.87□□□□□ -0.19
SCFD1-220ENST00000556486 GYS1P13807 737 aa13.87□□□□□ -0.19
SCFD1-220ENST00000556486 TIE1P35590 1138 aa13.87□□□□□ -0.19
SCFD1-220ENST00000556486 CARD14Q9BXL6 1004 aa13.87□□□□□ -0.19
SCFD1-220ENST00000556486 MFRPQ9BY79 579 aa13.87□□□□□ -0.19
SCFD1-220ENST00000556486 DAXXQ9UER7 740 aaPredicted RBP13.87□□□□□ -0.19
SCFD1-220ENST00000556486 PARP3Q9Y6F1 533 aa13.87□□□□□ -0.19
SCFD1-220ENST00000556486 KDRP35968 1356 aa13.86□□□□□ -0.19
SCFD1-220ENST00000556486 MYH14Q7Z406 1995 aaKnown RBP13.86□□□□□ -0.19
SCFD1-220ENST00000556486 PHKG2P15735 406 aa13.86□□□□□ -0.19
SCFD1-220ENST00000556486 CHRNA5P30532 468 aa13.86□□□□□ -0.19
SCFD1-220ENST00000556486 RFC4P35249 363 aa13.86□□□□□ -0.19
SCFD1-220ENST00000556486 PRELPP51888 382 aa13.86□□□□□ -0.19
SCFD1-220ENST00000556486 NLGN1Q8N2Q7 840 aa13.86□□□□□ -0.19
SCFD1-220ENST00000556486 ZC3H15Q8WU90 426 aaKnown RBP13.86□□□□□ -0.19
SCFD1-220ENST00000556486 BMP2KQ9NSY1 1161 aaPredicted RBP13.86□□□□□ -0.19
SCFD1-220ENST00000556486 SRP68Q9UHB9 627 aaKnown RBP13.86□□□□□ -0.19
SCFD1-220ENST00000556486 RASSF7Q02833 373 aa13.85□□□□□ -0.19
SCFD1-220ENST00000556486 FSTL1Q12841 308 aa13.85□□□□□ -0.19
SCFD1-220ENST00000556486 HOMEZQ8IX15 550 aa13.85□□□□□ -0.19
SCFD1-220ENST00000556486 EYA1Q99502 592 aa13.85□□□□□ -0.19
SCFD1-220ENST00000556486 KDM2BQ8NHM5 1336 aa13.85□□□□□ -0.19
SCFD1-220ENST00000556486 PLEKHG2Q9H7P9 1386 aa13.84□□□□□ -0.19
SCFD1-220ENST00000556486 IFNL2Q8IZJ0 200 aa13.84□□□□□ -0.19
SCFD1-220ENST00000556486 PIM2Q9P1W9 311 aa13.84□□□□□ -0.19
SCFD1-220ENST00000556486 HSPA1AP0DMV8 641 aaKnown RBP13.83□□□□□ -0.2
SCFD1-220ENST00000556486 HSPA1BP0DMV9 641 aaKnown RBP13.83□□□□□ -0.2
SCFD1-220ENST00000556486 ATN1P54259 1190 aaPredicted RBP13.83□□□□□ -0.2
SCFD1-220ENST00000556486 DDR1Q08345 913 aa13.83□□□□□ -0.2
SCFD1-220ENST00000556486 DALRD3Q5D0E6 543 aaKnown RBP13.83□□□□□ -0.2
SCFD1-220ENST00000556486 DCAF5Q96JK2 942 aa13.83□□□□□ -0.2
SCFD1-220ENST00000556486 WASHC2AQ641Q2 1341 aa13.83□□□□□ -0.2
SCFD1-220ENST00000556486 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.82□□□□□ -0.28e-8■■■□□ 15.9
SCFD1-220ENST00000556486 PCDHB8Q9UN66 801 aa13.82□□□□□ -0.2
SCFD1-220ENST00000556486 CCDC88AQ3V6T2 1871 aa13.81□□□□□ -0.2
SCFD1-220ENST00000556486 PTCD1O75127 700 aaKnown RBP13.81□□□□□ -0.2
SCFD1-220ENST00000556486 TNNT2P45379 298 aaPredicted RBP13.81□□□□□ -0.2
SCFD1-220ENST00000556486 NEUROD2Q15784 382 aa13.81□□□□□ -0.2
SCFD1-220ENST00000556486 E2F4Q16254 413 aa13.81□□□□□ -0.2
SCFD1-220ENST00000556486 SMC1BQ8NDV3 1235 aa13.81□□□□□ -0.2
SCFD1-220ENST00000556486 TIAM2Q8IVF5 1701 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms