RNA–Protein interactions for RNA: ENST00000556380.3

SRP54-210, Transcript of signal recognition particle 54, humanhuman

TSL 3

Gene SRP54, Length 600 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-210ENST00000556380 NBPF14Q5TI25 921 aa12.83□□□□□ -0.36
SRP54-210ENST00000556380 ADAMTS8Q9UP79 889 aa12.83□□□□□ -0.36
SRP54-210ENST00000556380 ADAMTS7Q9UKP4 1686 aa12.83□□□□□ -0.36
SRP54-210ENST00000556380 PSDA5PKW4 1024 aaPredicted RBP12.82□□□□□ -0.36
SRP54-210ENST00000556380 CHRM1P11229 460 aaPredicted RBP12.82□□□□□ -0.36
SRP54-210ENST00000556380 R3HDM1Q15032 1099 aaKnown RBP12.82□□□□□ -0.36
SRP54-210ENST00000556380 SLC4A9Q96Q91 983 aa12.82□□□□□ -0.36
SRP54-210ENST00000556380 CCNL1Q9UK58 526 aaPredicted RBP12.82□□□□□ -0.36
SRP54-210ENST00000556380 CEMIPQ8WUJ3 1361 aa12.81□□□□□ -0.36
SRP54-210ENST00000556380 MRC1P22897 1456 aa12.81□□□□□ -0.36
SRP54-210ENST00000556380 LOC102724428A0A0B4J2F2 783 aa12.81□□□□□ -0.36
SRP54-210ENST00000556380 HTATSF1O43719 755 aaKnown RBP12.81□□□□□ -0.36
SRP54-210ENST00000556380 SIK1P57059 783 aa12.81□□□□□ -0.36
SRP54-210ENST00000556380 SLC15A2Q16348 729 aa12.81□□□□□ -0.36
SRP54-210ENST00000556380 PNNQ9H307 717 aaKnown RBP12.81□□□□□ -0.36
SRP54-210ENST00000556380 LY75O60449 1722 aa12.8□□□□□ -0.36
SRP54-210ENST00000556380 NFE2L2Q16236 605 aa12.8□□□□□ -0.36
SRP54-210ENST00000556380 ZNF827Q17R98 1081 aa12.8□□□□□ -0.36
SRP54-210ENST00000556380 PAPPAQ13219 1627 aa12.8□□□□□ -0.36
SRP54-210ENST00000556380 SCN11AQ9UI33 1791 aa12.79□□□□□ -0.36
SRP54-210ENST00000556380 ITPK1Q13572 414 aa12.79□□□□□ -0.36
SRP54-210ENST00000556380 PNISRQ8TF01 805 aaKnown RBP12.79□□□□□ -0.36
SRP54-210ENST00000556380 STK32BQ9NY57 414 aa12.79□□□□□ -0.36
SRP54-210ENST00000556380 CIZ1Q9ULV3 898 aaPredicted RBP12.79□□□□□ -0.36
SRP54-210ENST00000556380 DCTN1Q14203 1278 aa12.78□□□□□ -0.36
SRP54-210ENST00000556380 WDR43Q15061 677 aaKnown RBP eCLIP12.78□□□□□ -0.36
SRP54-210ENST00000556380 MCM10Q7L590 875 aa12.78□□□□□ -0.36
SRP54-210ENST00000556380 ZNF467Q7Z7K2 595 aaPredicted RBP12.78□□□□□ -0.36
SRP54-210ENST00000556380 RUNDC1Q96C34 613 aa12.78□□□□□ -0.36
SRP54-210ENST00000556380 PDGFDQ9GZP0 370 aaPredicted RBP12.78□□□□□ -0.36
SRP54-210ENST00000556380 TMPOP42166 694 aaKnown RBP12.77□□□□□ -0.37
SRP54-210ENST00000556380 SLC39A6Q13433 755 aa12.77□□□□□ -0.37
SRP54-210ENST00000556380 CCDC146Q8IYE0 955 aa12.77□□□□□ -0.37
SRP54-210ENST00000556380 LINC00116Q8NCU8 138 aa12.77□□□□□ -0.37
SRP54-210ENST00000556380 SCUBE2Q9NQ36 999 aa12.77□□□□□ -0.37
SRP54-210ENST00000556380 NEFMP07197 916 aa12.76□□□□□ -0.37
SRP54-210ENST00000556380 ATP6V1AP38606 617 aa12.76□□□□□ -0.37
SRP54-210ENST00000556380 TEFQ10587 303 aa12.76□□□□□ -0.37
SRP54-210ENST00000556380 RTF1Q92541 710 aaKnown RBP12.76□□□□□ -0.37
SRP54-210ENST00000556380 MAPK8IP3Q9UPT6 1336 aa12.76□□□□□ -0.37
SRP54-210ENST00000556380 PTCD1O75127 700 aaKnown RBP12.75□□□□□ -0.37
SRP54-210ENST00000556380 HMGB2P26583 209 aaKnown RBP12.75□□□□□ -0.37
SRP54-210ENST00000556380 RIPK4P57078 832 aa12.75□□□□□ -0.37
SRP54-210ENST00000556380 AMIGO3Q86WK7 504 aa12.75□□□□□ -0.37
SRP54-210ENST00000556380 MRS2Q9HD23 443 aa12.75□□□□□ -0.37
SRP54-210ENST00000556380 PNPLA7Q6ZV29 1317 aa12.74□□□□□ -0.37
SRP54-210ENST00000556380 KCNQ3O43525 872 aa12.74□□□□□ -0.37
SRP54-210ENST00000556380 ZNF790Q6PG37 636 aa12.74□□□□□ -0.37
SRP54-210ENST00000556380 KCPQ6ZWJ8 1503 aa12.73□□□□□ -0.37
SRP54-210ENST00000556380 BTBD11A6QL63 1104 aa12.73□□□□□ -0.37
SRP54-210ENST00000556380 TAF7Q15545 349 aaPredicted RBP12.73□□□□□ -0.37
SRP54-210ENST00000556380 RC3H1Q5TC82 1133 aaKnown RBP12.73□□□□□ -0.37
SRP54-210ENST00000556380 VSIG10Q8N0Z9 540 aa12.73□□□□□ -0.37
SRP54-210ENST00000556380 ZNF496Q96IT1 587 aaPredicted RBP12.73□□□□□ -0.37
SRP54-210ENST00000556380 THUMPD2Q9BTF0 503 aaKnown RBP12.73□□□□□ -0.37
SRP54-210ENST00000556380 TFCP2L1Q9NZI6 479 aa12.73□□□□□ -0.37
SRP54-210ENST00000556380 RRP7AQ9Y3A4 280 aaKnown RBP12.73□□□□□ -0.37
SRP54-210ENST00000556380 ZNF831Q5JPB2 1677 aa12.73□□□□□ -0.37
SRP54-210ENST00000556380 SIPA1L3O60292 1781 aaPredicted RBP12.72□□□□□ -0.37
SRP54-210ENST00000556380 APAF1O14727 1248 aa12.72□□□□□ -0.37
SRP54-210ENST00000556380 IRX5P78411 483 aaPredicted RBP12.72□□□□□ -0.37
SRP54-210ENST00000556380 COL23A1Q86Y22 540 aaPredicted RBP12.72□□□□□ -0.37
SRP54-210ENST00000556380 DNAJC10Q8IXB1 793 aa12.72□□□□□ -0.37
SRP54-210ENST00000556380 CNTNAP4Q9C0A0 1308 aa12.71□□□□□ -0.37
SRP54-210ENST00000556380 PLCG2P16885 1265 aa12.71□□□□□ -0.37
SRP54-210ENST00000556380 SMIM5Q71RC9 77 aa12.71□□□□□ -0.37
SRP54-210ENST00000556380 MIS18AQ9NYP9 233 aa12.71□□□□□ -0.37
SRP54-210ENST00000556380 TAF1LQ8IZX4 1826 aa12.71□□□□□ -0.38
SRP54-210ENST00000556380 CASZ1Q86V15 1759 aa12.71□□□□□ -0.38
SRP54-210ENST00000556380 VIRMAQ69YN4 1812 aaKnown RBP12.7□□□□□ -0.38
SRP54-210ENST00000556380 CYP19A1P11511 503 aaPredicted RBP12.7□□□□□ -0.38
SRP54-210ENST00000556380 LMOD3Q0VAK6 560 aa12.7□□□□□ -0.38
SRP54-210ENST00000556380 NEUROD2Q15784 382 aa12.7□□□□□ -0.38
SRP54-210ENST00000556380 INTS5Q6P9B9 1019 aaKnown RBP12.7□□□□□ -0.38
SRP54-210ENST00000556380 TTC5Q8N0Z6 440 aa12.7□□□□□ -0.38
SRP54-210ENST00000556380 SLC16A10Q8TF71 515 aa12.7□□□□□ -0.38
SRP54-210ENST00000556380 C4BP0C0L5 1744 aa12.7□□□□□ -0.38
SRP54-210ENST00000556380 C5P01031 1676 aa12.7□□□□□ -0.38
SRP54-210ENST00000556380 HEG1Q9ULI3 1381 aa12.69□□□□□ -0.38
SRP54-210ENST00000556380 DLG5Q8TDM6 1919 aa12.69□□□□□ -0.38
SRP54-210ENST00000556380 RPS6KA4O75676 772 aa12.69□□□□□ -0.38
SRP54-210ENST00000556380 ZBTB7AO95365 584 aa12.69□□□□□ -0.38
SRP54-210ENST00000556380 SSFA2P28290 1259 aa12.69□□□□□ -0.38
SRP54-210ENST00000556380 CRKLP46109 303 aaKnown RBP12.69□□□□□ -0.38
SRP54-210ENST00000556380 FLAD1Q8NFF5 587 aa12.69□□□□□ -0.38
SRP54-210ENST00000556380 AK7Q96M32 723 aa12.69□□□□□ -0.38
SRP54-210ENST00000556380 FMNL2Q96PY5 1086 aa12.69□□□□□ -0.38
SRP54-210ENST00000556380 CICQ96RK0 1608 aaPredicted RBP12.69□□□□□ -0.38
SRP54-210ENST00000556380 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.68□□□□□ -0.38
SRP54-210ENST00000556380 GNPATO15228 680 aa12.68□□□□□ -0.38
SRP54-210ENST00000556380 PTGER2P43116 358 aa12.68□□□□□ -0.38
SRP54-210ENST00000556380 PSEN1P49768 467 aa12.68□□□□□ -0.38
SRP54-210ENST00000556380 MTFR1LQ9H019 292 aa12.68□□□□□ -0.38
SRP54-210ENST00000556380 SPON1Q9HCB6 807 aa12.68□□□□□ -0.38
SRP54-210ENST00000556380 BABAM1Q9NWV8 329 aa12.68□□□□□ -0.38
SRP54-210ENST00000556380 UBR2Q8IWV8 1755 aa12.68□□□□□ -0.38
SRP54-210ENST00000556380 MYH14Q7Z406 1995 aaKnown RBP12.67□□□□□ -0.38
SRP54-210ENST00000556380 CCER2I3L3R5 266 aa12.67□□□□□ -0.38
SRP54-210ENST00000556380 CHL1O00533 1208 aa12.67□□□□□ -0.38
SRP54-210ENST00000556380 DIEXFQ68CQ4 756 aaKnown RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms