RNA–Protein interactions for RNA: ENST00000555402.1

VRK1-205, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 415 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-205ENST00000555402 SNRKQ9NRH2 765 aa11.15□□□□□ -0.62
VRK1-205ENST00000555402 ATP4AP20648 1035 aa11.14□□□□□ -0.63
VRK1-205ENST00000555402 ADH6P28332 368 aa11.14□□□□□ -0.63
VRK1-205ENST00000555402 HCN2Q9UL51 889 aa11.14□□□□□ -0.63
VRK1-205ENST00000555402 APBB1O00213 710 aa11.13□□□□□ -0.63
VRK1-205ENST00000555402 TNP2Q05952 138 aa11.13□□□□□ -0.63
VRK1-205ENST00000555402 FAM182BQ5T319 152 aa11.13□□□□□ -0.63
VRK1-205ENST00000555402 AIDAQ96BJ3 306 aa11.13□□□□□ -0.63
VRK1-205ENST00000555402 MAPTP10636 758 aaKnown RBP11.12□□□□□ -0.63
VRK1-205ENST00000555402 FCHSD1Q86WN1 690 aa11.12□□□□□ -0.63
VRK1-205ENST00000555402 AVENQ9NQS1 362 aaPredicted RBP11.12□□□□□ -0.63
VRK1-205ENST00000555402 KRTAP9-1A8MXZ3 250 aaPredicted RBP11.11□□□□□ -0.63
VRK1-205ENST00000555402 INHAP05111 366 aa11.11□□□□□ -0.63
VRK1-205ENST00000555402 CD33P20138 364 aa11.11□□□□□ -0.63
VRK1-205ENST00000555402 NIFKQ9BYG3 293 aaKnown RBP11.11□□□□□ -0.63
VRK1-205ENST00000555402 KRTAP9-2Q9BYQ4 174 aa11.11□□□□□ -0.63
VRK1-205ENST00000555402 A0A1W2PNR3 127 aa11.1□□□□□ -0.63
VRK1-205ENST00000555402 DCDC2BA2VCK2 349 aa11.1□□□□□ -0.63
VRK1-205ENST00000555402 GATA4P43694 442 aa11.1□□□□□ -0.63
VRK1-205ENST00000555402 SCNN1DP51172 638 aa11.1□□□□□ -0.63
VRK1-205ENST00000555402 SLFNL1Q499Z3 407 aa11.1□□□□□ -0.63
VRK1-205ENST00000555402 OXLD1Q5BKU9 147 aa11.1□□□□□ -0.63
VRK1-205ENST00000555402 SIRT1Q96EB6 747 aa11.1□□□□□ -0.63
VRK1-205ENST00000555402 TRIM11Q96F44 468 aa11.1□□□□□ -0.63
VRK1-205ENST00000555402 PLVAPQ9BX97 442 aa11.1□□□□□ -0.63
VRK1-205ENST00000555402 EIF4G2P78344 907 aaKnown RBP eCLIP11.09□□□□□ -0.63
VRK1-205ENST00000555402 ARSJQ5FYB0 599 aaPredicted RBP11.09□□□□□ -0.63
VRK1-205ENST00000555402 KHNYNO15037 678 aaKnown RBP11.08□□□□□ -0.64
VRK1-205ENST00000555402 SMTNP53814 917 aa11.08□□□□□ -0.64
VRK1-205ENST00000555402 GDF10P55107 478 aa11.08□□□□□ -0.64
VRK1-205ENST00000555402 NEUROD2Q15784 382 aa11.08□□□□□ -0.64
VRK1-205ENST00000555402 TMEM132AQ24JP5 1023 aa11.08□□□□□ -0.64
VRK1-205ENST00000555402 ZMYM1Q5SVZ6 1142 aa11.08□□□□□ -0.64
VRK1-205ENST00000555402 CHIC2Q9UKJ5 165 aa11.08□□□□□ -0.64
VRK1-205ENST00000555402 SPATA31C1P0DKV0 1188 aa11.06□□□□□ -0.64
VRK1-205ENST00000555402 PCBP4P57723 403 aaKnown RBP11.06□□□□□ -0.64
VRK1-205ENST00000555402 KRTAP9-6A0A140TA67 174 aa11.05□□□□□ -0.64
VRK1-205ENST00000555402 ZNF468Q5VIY5 522 aaPredicted RBP11.05□□□□□ -0.64
VRK1-205ENST00000555402 PRR12Q9ULL5 1215 aa11.05□□□□□ -0.64
VRK1-205ENST00000555402 BRPF1P55201 1214 aaPredicted RBP11.04□□□□□ -0.64
VRK1-205ENST00000555402 NBPF1Q3BBV0 1214 aa11.04□□□□□ -0.64
VRK1-205ENST00000555402 ZIC5Q96T25 663 aa11.04□□□□□ -0.64
VRK1-205ENST00000555402 TBC1D2BQ9UPU7 963 aa11.04□□□□□ -0.64
VRK1-205ENST00000555402 GTF3C3Q9Y5Q9 886 aa11.04□□□□□ -0.64
VRK1-205ENST00000555402 FAM157BP0CG42 384 aa11.03□□□□□ -0.64
VRK1-205ENST00000555402 ZNF295-AS1Q8N0V1 137 aa11.03□□□□□ -0.64
VRK1-205ENST00000555402 TATP17735 454 aaPredicted RBP11.02□□□□□ -0.65
VRK1-205ENST00000555402 RSPO4Q2I0M5 234 aaPredicted RBP11.02□□□□□ -0.65
VRK1-205ENST00000555402 ZDHHC3Q9NYG2 299 aa11.02□□□□□ -0.65
VRK1-205ENST00000555402 SERTAD1Q9UHV2 236 aa11.02□□□□□ -0.65
VRK1-205ENST00000555402 CDK2AP1O14519 115 aa11.01□□□□□ -0.65
VRK1-205ENST00000555402 SLC4A9Q96Q91 983 aa11.01□□□□□ -0.65
VRK1-205ENST00000555402 STRN4Q9NRL3 753 aa11.01□□□□□ -0.65
VRK1-205ENST00000555402 MARK1Q9P0L2 795 aa11.01□□□□□ -0.65
VRK1-205ENST00000555402 GJA3Q9Y6H8 435 aa11.01□□□□□ -0.65
VRK1-205ENST00000555402 IRF5Q13568 498 aa11□□□□□ -0.65
VRK1-205ENST00000555402 NKAPLQ5M9Q1 402 aa11□□□□□ -0.65
VRK1-205ENST00000555402 IQSEC3Q9UPP2 1182 aaPredicted RBP11□□□□□ -0.65
VRK1-205ENST00000555402 ELOA3CA0A087WX78 387 aaPredicted RBP10.99□□□□□ -0.65
VRK1-205ENST00000555402 A6NJY4 79 aa10.99□□□□□ -0.65
VRK1-205ENST00000555402 ELOA3DA6NLF2 546 aaPredicted RBP10.99□□□□□ -0.65
VRK1-205ENST00000555402 ALAS2P22557 587 aa10.99□□□□□ -0.65
VRK1-205ENST00000555402 MTFR1Q15390 333 aa10.99□□□□□ -0.65
VRK1-205ENST00000555402 MAP7D1Q3KQU3 841 aa10.99□□□□□ -0.65
VRK1-205ENST00000555402 ELOA3BQ3SY89 546 aa10.99□□□□□ -0.65
VRK1-205ENST00000555402 SAMD5Q5TGI4 173 aa10.99□□□□□ -0.65
VRK1-205ENST00000555402 ELOA3Q8NG57 546 aa10.99□□□□□ -0.65
VRK1-205ENST00000555402 SPDYE3A6NKU9 549 aa10.98□□□□□ -0.65
VRK1-205ENST00000555402 TMEM229AB2RXF0 380 aa10.98□□□□□ -0.65
VRK1-205ENST00000555402 LAMC2Q13753 1193 aa10.98□□□□□ -0.65
VRK1-205ENST00000555402 PRM3Q9NNZ6 103 aa10.98□□□□□ -0.65
VRK1-205ENST00000555402 CABP1Q9NZU7 370 aa10.98□□□□□ -0.65
VRK1-205ENST00000555402 USP3Q9Y6I4 520 aa10.98□□□□□ -0.65
VRK1-205ENST00000555402 EFSO43281 561 aa10.97□□□□□ -0.65
VRK1-205ENST00000555402 FOXD4L6Q3SYB3 417 aaPredicted RBP10.97□□□□□ -0.65
VRK1-205ENST00000555402 PRRT3Q5FWE3 981 aa10.97□□□□□ -0.65
VRK1-205ENST00000555402 FOXD4L3Q6VB84 417 aaPredicted RBP10.97□□□□□ -0.65
VRK1-205ENST00000555402 TPSG1Q9NRR2 321 aa10.97□□□□□ -0.65
VRK1-205ENST00000555402 BICDL1Q6ZP65 573 aa10.96□□□□□ -0.65
VRK1-205ENST00000555402 SYT9Q86SS6 491 aa10.96□□□□□ -0.65
VRK1-205ENST00000555402 PLPP7Q8NBV4 271 aa10.96□□□□□ -0.65
VRK1-205ENST00000555402 MDFIQ99750 246 aa10.96□□□□□ -0.65
VRK1-205ENST00000555402 SCO2A0A1W2PP80 73 aa10.95□□□□□ -0.66
VRK1-205ENST00000555402 APBA3O96018 575 aa10.95□□□□□ -0.66
VRK1-205ENST00000555402 VAC14Q08AM6 782 aa10.95□□□□□ -0.66
VRK1-205ENST00000555402 PARP3Q9Y6F1 533 aa10.94□□□□□ -0.66
VRK1-205ENST00000555402 DYRK3O43781 588 aa10.92□□□□□ -0.66
VRK1-205ENST00000555402 SIN3BO75182 1162 aa10.92□□□□□ -0.66
VRK1-205ENST00000555402 COL9A3Q14050 684 aaPredicted RBP10.92□□□□□ -0.66
VRK1-205ENST00000555402 ADARB2-AS1A8MUL3 147 aa10.91□□□□□ -0.66
VRK1-205ENST00000555402 FAM229AH3BQW9 127 aa10.91□□□□□ -0.66
VRK1-205ENST00000555402 TXLNAP40222 546 aa10.91□□□□□ -0.66
VRK1-205ENST00000555402 PCDHGA11Q9Y5H2 935 aa10.91□□□□□ -0.66
VRK1-205ENST00000555402 M0R082 166 aa10.9□□□□□ -0.66
VRK1-205ENST00000555402 ARTNQ5T4W7 220 aa10.9□□□□□ -0.66
VRK1-205ENST00000555402 ZNF417Q8TAU3 575 aa10.9□□□□□ -0.66
VRK1-205ENST00000555402 ZNF587Q96SQ5 575 aaPredicted RBP10.9□□□□□ -0.66
VRK1-205ENST00000555402 TRIM28Q13263 835 aaKnown RBP10.89□□□□□ -0.67
VRK1-205ENST00000555402 ZFP64Q9NPA5 681 aa10.89□□□□□ -0.67
VRK1-205ENST00000555402 PRDM6Q9NQX0 595 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms