RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 CACNA1FO60840 1977 aa13.85□□□□□ -0.19
TDP1-211ENST00000555178 NBPF26B4DH59 902 aa13.84□□□□□ -0.19
TDP1-211ENST00000555178 SNRPA1P09661 255 aaKnown RBP13.84□□□□□ -0.19
TDP1-211ENST00000555178 HDGFL1Q5TGJ6 251 aa13.84□□□□□ -0.19
TDP1-211ENST00000555178 NBPF14Q5TI25 921 aa13.84□□□□□ -0.19
TDP1-211ENST00000555178 NBPF10Q6P3W6 841 aaKnown RBP13.84□□□□□ -0.19
TDP1-211ENST00000555178 MRPL50Q8N5N7 158 aaKnown RBP13.84□□□□□ -0.19
TDP1-211ENST00000555178 NBPF15Q8N660 670 aa13.84□□□□□ -0.19
TDP1-211ENST00000555178 SMC4Q9NTJ3 1288 aa13.84□□□□□ -0.19
TDP1-211ENST00000555178 CHPF2Q9P2E5 772 aa13.84□□□□□ -0.19
TDP1-211ENST00000555178 PHAXQ9H814 394 aaKnown RBP13.84□□□□□ -0.19
TDP1-211ENST00000555178 CT47B1P0C2W7 299 aaPredicted RBP13.83□□□□□ -0.2
TDP1-211ENST00000555178 ATP6V1AP38606 617 aa13.83□□□□□ -0.2
TDP1-211ENST00000555178 AMIGO3Q86WK7 504 aa13.83□□□□□ -0.2
TDP1-211ENST00000555178 LINC00116Q8NCU8 138 aa13.83□□□□□ -0.2
TDP1-211ENST00000555178 FRAT1Q92837 279 aaPredicted RBP13.83□□□□□ -0.2
TDP1-211ENST00000555178 APBA3O96018 575 aa13.83□□□□□ -0.2
TDP1-211ENST00000555178 CYP19A1P11511 503 aaPredicted RBP13.83□□□□□ -0.2
TDP1-211ENST00000555178 CICQ96RK0 1608 aaPredicted RBP13.83□□□□□ -0.2
TDP1-211ENST00000555178 ZNF831Q5JPB2 1677 aa13.82□□□□□ -0.2
TDP1-211ENST00000555178 SLC4A2P04920 1241 aa13.82□□□□□ -0.2
TDP1-211ENST00000555178 MYL6BP14649 208 aa13.82□□□□□ -0.2
TDP1-211ENST00000555178 LRP10Q7Z4F1 713 aa13.82□□□□□ -0.2
TDP1-211ENST00000555178 DEFB132Q7Z7B7 95 aa13.81□□□□□ -0.2
TDP1-211ENST00000555178 NOB1Q9ULX3 412 aaKnown RBP13.81□□□□□ -0.2
TDP1-211ENST00000555178 RREB1Q92766 1687 aa13.81□□□□□ -0.2
TDP1-211ENST00000555178 NEFLP07196 543 aa13.8□□□□□ -0.2
TDP1-211ENST00000555178 INTS5Q6P9B9 1019 aaKnown RBP13.8□□□□□ -0.2
TDP1-211ENST00000555178 SMARCC1Q92922 1105 aaPredicted RBP13.8□□□□□ -0.2
TDP1-211ENST00000555178 TUBGCP6Q96RT7 1819 aa13.8□□□□□ -0.2
TDP1-211ENST00000555178 HOXB7P09629 217 aa13.8□□□□□ -0.2
TDP1-211ENST00000555178 EN1Q05925 392 aaPredicted RBP13.8□□□□□ -0.2
TDP1-211ENST00000555178 VSIG10Q8N0Z9 540 aa13.8□□□□□ -0.2
TDP1-211ENST00000555178 CCNL1Q9UK58 526 aaPredicted RBP13.8□□□□□ -0.2
TDP1-211ENST00000555178 ZBTB1Q9Y2K1 713 aa13.8□□□□□ -0.2
TDP1-211ENST00000555178 ALDH1L2Q3SY69 923 aa13.79□□□□□ -0.2
TDP1-211ENST00000555178 C4BP0C0L5 1744 aa13.79□□□□□ -0.2
TDP1-211ENST00000555178 RLBP1P12271 317 aa13.79□□□□□ -0.2
TDP1-211ENST00000555178 CANXP27824 592 aaKnown RBP13.79□□□□□ -0.2
TDP1-211ENST00000555178 CRKLP46109 303 aaKnown RBP13.79□□□□□ -0.2
TDP1-211ENST00000555178 EZH2Q15910 746 aaKnown RBP13.79□□□□□ -0.2
TDP1-211ENST00000555178 TXNRD1Q16881 649 aa13.79□□□□□ -0.2
TDP1-211ENST00000555178 CCDC30Q5VVM6 783 aa13.79□□□□□ -0.2
TDP1-211ENST00000555178 CLUAP1Q96AJ1 413 aa13.79□□□□□ -0.2
TDP1-211ENST00000555178 PANK1Q8TE04 598 aa13.78□□□□□ -0.2
TDP1-211ENST00000555178 ZNF428Q96B54 188 aa13.78□□□□□ -0.2
TDP1-211ENST00000555178 UBR3Q6ZT12 1888 aa13.78□□□□□ -0.2
TDP1-211ENST00000555178 F6X3S4 739 aa13.78□□□□□ -0.2
TDP1-211ENST00000555178 AIMP1Q12904 312 aaKnown RBP13.78□□□□□ -0.2
TDP1-211ENST00000555178 TTLL7Q6ZT98 887 aa13.78□□□□□ -0.2
TDP1-211ENST00000555178 TRIM27P14373 513 aa13.77□□□□□ -0.21
TDP1-211ENST00000555178 DDX21Q9NR30 783 aaKnown RBP eCLIP13.77□□□□□ -0.21
TDP1-211ENST00000555178 ARFGEF2Q9Y6D5 1785 aa13.76□□□□□ -0.21
TDP1-211ENST00000555178 CAMKK2Q96RR4 588 aa13.76□□□□□ -0.21
TDP1-211ENST00000555178 CRBNQ96SW2 442 aa13.76□□□□□ -0.21
TDP1-211ENST00000555178 ZNF330Q9Y3S2 320 aaPredicted RBP13.76□□□□□ -0.21
TDP1-211ENST00000555178 NUP188Q5SRE5 1749 aa13.76□□□□□ -0.21
TDP1-211ENST00000555178 RGPD3A6NKT7 1758 aaPredicted RBP13.76□□□□□ -0.21
TDP1-211ENST00000555178 RGPD4Q7Z3J3 1758 aa13.76□□□□□ -0.21
TDP1-211ENST00000555178 PLSCR1O15162 318 aa13.76□□□□□ -0.21
TDP1-211ENST00000555178 FLIIQ13045 1269 aa13.76□□□□□ -0.21
TDP1-211ENST00000555178 EXOC6Q8TAG9 804 aa13.76□□□□□ -0.21
TDP1-211ENST00000555178 XAGE3Q8WTP9 111 aa13.76□□□□□ -0.21
TDP1-211ENST00000555178 STK31Q9BXU1 1019 aa13.76□□□□□ -0.21
TDP1-211ENST00000555178 DBF4Q9UBU7 674 aaPredicted RBP13.76□□□□□ -0.21
TDP1-211ENST00000555178 COPS6Q7L5N1 327 aa13.75□□□□□ -0.21
TDP1-211ENST00000555178 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.75□□□□□ -0.21
TDP1-211ENST00000555178 CCDC87Q9NVE4 849 aa13.75□□□□□ -0.21
TDP1-211ENST00000555178 SOS1Q07889 1333 aaPredicted RBP13.75□□□□□ -0.21
TDP1-211ENST00000555178 KIF16BQ96L93 1317 aa13.75□□□□□ -0.21
TDP1-211ENST00000555178 C4AP0C0L4 1744 aa13.75□□□□□ -0.21
TDP1-211ENST00000555178 NUP98P52948 1817 aa13.75□□□□□ -0.21
TDP1-211ENST00000555178 BRPF1P55201 1214 aaPredicted RBP13.75□□□□□ -0.21
TDP1-211ENST00000555178 ZNF827Q17R98 1081 aa13.75□□□□□ -0.21
TDP1-211ENST00000555178 ZKSCAN2Q63HK3 967 aa13.75□□□□□ -0.21
TDP1-211ENST00000555178 ADCY9O60503 1353 aa13.75□□□□□ -0.21
TDP1-211ENST00000555178 STARD3NLO95772 234 aa13.74□□□□□ -0.21
TDP1-211ENST00000555178 ATF7IPQ6VMQ6 1270 aa13.74□□□□□ -0.21
TDP1-211ENST00000555178 UPF1Q92900 1129 aaKnown RBP eCLIP13.74□□□□□ -0.21
TDP1-211ENST00000555178 TEX13AQ9BXU3 409 aaPredicted RBP13.74□□□□□ -0.21
TDP1-211ENST00000555178 COG6Q9Y2V7 657 aa13.74□□□□□ -0.21
TDP1-211ENST00000555178 ANO8Q9HCE9 1232 aaPredicted RBP13.73□□□□□ -0.21
TDP1-211ENST00000555178 TBC1D2BQ9UPU7 963 aa13.73□□□□□ -0.21
TDP1-211ENST00000555178 PI4KAP2A4QPH2 592 aa13.72□□□□□ -0.21
TDP1-211ENST00000555178 EIF5P55010 431 aaKnown RBP13.72□□□□□ -0.21
TDP1-211ENST00000555178 FKBP5Q13451 457 aaPredicted RBP13.72□□□□□ -0.21
TDP1-211ENST00000555178 PI4KAP1Q8N8J0 262 aa13.72□□□□□ -0.21
TDP1-211ENST00000555178 AFDNP55196 1824 aaKnown RBP13.72□□□□□ -0.21
TDP1-211ENST00000555178 GNPATO15228 680 aa13.72□□□□□ -0.21
TDP1-211ENST00000555178 ZBTB3Q9H5J0 574 aa13.72□□□□□ -0.21
TDP1-211ENST00000555178 HYPKQ9NX55 129 aa13.72□□□□□ -0.21
TDP1-211ENST00000555178 CNTNAP4Q9C0A0 1308 aa13.71□□□□□ -0.21
TDP1-211ENST00000555178 HLFQ16534 295 aa13.71□□□□□ -0.21
TDP1-211ENST00000555178 FTSJ3Q8IY81 847 aaKnown RBP13.71□□□□□ -0.21
TDP1-211ENST00000555178 DZIP1LQ8IYY4 767 aaKnown RBP13.71□□□□□ -0.21
TDP1-211ENST00000555178 ARXQ96QS3 562 aa13.71□□□□□ -0.21
TDP1-211ENST00000555178 PHF14O94880 888 aa13.71□□□□□ -0.22
TDP1-211ENST00000555178 SLC27A3Q5K4L6 730 aa13.71□□□□□ -0.22
TDP1-211ENST00000555178 TMEM57Q8N5G2 664 aa13.71□□□□□ -0.22
TDP1-211ENST00000555178 N4BP2Q86UW6 1770 aaPredicted RBP13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms