RNA–Protein interactions for RNA: ENST00000554393.2

PTCD2P1-201, Transcript of pentatricopeptide repeat domain 2 pseudogene 1, humanhuman

BASIC

Gene PTCD2P1, Length 1,136 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD2P1-201ENST00000554393 VSIG10Q8N0Z9 540 aa13.9□□□□□ -0.18
PTCD2P1-201ENST00000554393 CD2APQ9Y5K6 639 aa13.9□□□□□ -0.18
PTCD2P1-201ENST00000554393 DLG5Q8TDM6 1919 aa13.9□□□□□ -0.18
PTCD2P1-201ENST00000554393 HSPA6P17066 643 aa13.89□□□□□ -0.19
PTCD2P1-201ENST00000554393 CRKLP46109 303 aaKnown RBP13.89□□□□□ -0.19
PTCD2P1-201ENST00000554393 TEFQ10587 303 aa13.89□□□□□ -0.19
PTCD2P1-201ENST00000554393 SMIM5Q71RC9 77 aa13.89□□□□□ -0.19
PTCD2P1-201ENST00000554393 IL17REQ8NFR9 667 aa13.89□□□□□ -0.19
PTCD2P1-201ENST00000554393 PHACTR3Q96KR7 559 aa13.89□□□□□ -0.19
PTCD2P1-201ENST00000554393 RALBP1Q15311 655 aa13.88□□□□□ -0.19
PTCD2P1-201ENST00000554393 KLHL34Q8N239 644 aa13.88□□□□□ -0.19
PTCD2P1-201ENST00000554393 NLGN1Q8N2Q7 840 aa13.88□□□□□ -0.19
PTCD2P1-201ENST00000554393 RFC4P35249 363 aa13.87□□□□□ -0.19
PTCD2P1-201ENST00000554393 SLC39A6Q13433 755 aa13.87□□□□□ -0.19
PTCD2P1-201ENST00000554393 TTC5Q8N0Z6 440 aa13.87□□□□□ -0.19
PTCD2P1-201ENST00000554393 NLGN2Q8NFZ4 835 aa13.87□□□□□ -0.19
PTCD2P1-201ENST00000554393 ARHGEF1Q92888 912 aaKnown RBP13.87□□□□□ -0.19
PTCD2P1-201ENST00000554393 HTATSF1O43719 755 aaKnown RBP13.86□□□□□ -0.19
PTCD2P1-201ENST00000554393 CYP19A1P11511 503 aaPredicted RBP13.86□□□□□ -0.19
PTCD2P1-201ENST00000554393 INTS5Q6P9B9 1019 aaKnown RBP13.86□□□□□ -0.19
PTCD2P1-201ENST00000554393 DNAJC10Q8IXB1 793 aa13.86□□□□□ -0.19
PTCD2P1-201ENST00000554393 CCDC87Q9NVE4 849 aa13.86□□□□□ -0.19
PTCD2P1-201ENST00000554393 KIAA1551Q9HCM1 1747 aa13.85□□□□□ -0.19
PTCD2P1-201ENST00000554393 GYS1P13807 737 aa13.85□□□□□ -0.19
PTCD2P1-201ENST00000554393 ZNF790Q6PG37 636 aa13.85□□□□□ -0.19
PTCD2P1-201ENST00000554393 SOS1Q07889 1333 aaPredicted RBP13.85□□□□□ -0.19
PTCD2P1-201ENST00000554393 USP42Q9H9J4 1324 aaKnown RBP13.85□□□□□ -0.19
PTCD2P1-201ENST00000554393 HEG1Q9ULI3 1381 aa13.84□□□□□ -0.19
PTCD2P1-201ENST00000554393 NEFMP07197 916 aa13.84□□□□□ -0.19
PTCD2P1-201ENST00000554393 MMP10P09238 476 aa13.84□□□□□ -0.19
PTCD2P1-201ENST00000554393 PRELPP51888 382 aa13.84□□□□□ -0.19
PTCD2P1-201ENST00000554393 DDX10Q13206 875 aaKnown RBP13.84□□□□□ -0.19
PTCD2P1-201ENST00000554393 GPR162Q16538 588 aa13.84□□□□□ -0.19
PTCD2P1-201ENST00000554393 RTF1Q92541 710 aaKnown RBP13.84□□□□□ -0.19
PTCD2P1-201ENST00000554393 PNNQ9H307 717 aaKnown RBP13.84□□□□□ -0.19
PTCD2P1-201ENST00000554393 C10orf71Q711Q0 1435 aa13.83□□□□□ -0.2
PTCD2P1-201ENST00000554393 STARD3NLO95772 234 aa13.83□□□□□ -0.2
PTCD2P1-201ENST00000554393 ZEB1P37275 1124 aaPredicted RBP13.83□□□□□ -0.2
PTCD2P1-201ENST00000554393 ZNF496Q96IT1 587 aaPredicted RBP13.83□□□□□ -0.2
PTCD2P1-201ENST00000554393 TEX13AQ9BXU3 409 aaPredicted RBP13.83□□□□□ -0.2
PTCD2P1-201ENST00000554393 PCDH10Q9P2E7 1040 aa13.83□□□□□ -0.2
PTCD2P1-201ENST00000554393 COL15A1P39059 1388 aa13.83□□□□□ -0.2
PTCD2P1-201ENST00000554393 BRCA1P38398 1863 aaKnown RBP13.82□□□□□ -0.2
PTCD2P1-201ENST00000554393 KDM3BQ7LBC6 1761 aa13.82□□□□□ -0.2
PTCD2P1-201ENST00000554393 GRIN3BO60391 1043 aa13.82□□□□□ -0.2
PTCD2P1-201ENST00000554393 FMNL2Q96PY5 1086 aa13.82□□□□□ -0.2
PTCD2P1-201ENST00000554393 PLEKHF1Q96S99 279 aa13.82□□□□□ -0.2
PTCD2P1-201ENST00000554393 MYBBP1AQ9BQG0 1328 aaKnown RBP13.82□□□□□ -0.2
PTCD2P1-201ENST00000554393 SCN7AQ01118 1682 aa13.82□□□□□ -0.2
PTCD2P1-201ENST00000554393 N4BP2Q86UW6 1770 aaPredicted RBP13.81□□□□□ -0.2
PTCD2P1-201ENST00000554393 BTBD11A6QL63 1104 aa13.81□□□□□ -0.2
PTCD2P1-201ENST00000554393 ZBTB1Q9Y2K1 713 aa13.81□□□□□ -0.2
PTCD2P1-201ENST00000554393 NRXN2Q9P2S2 1712 aa13.81□□□□□ -0.2
PTCD2P1-201ENST00000554393 LAMB4A4D0S4 1761 aa13.81□□□□□ -0.2
PTCD2P1-201ENST00000554393 COL13A1Q5TAT6 717 aaPredicted RBP13.8□□□□□ -0.2
PTCD2P1-201ENST00000554393 MCM10Q7L590 875 aa13.8□□□□□ -0.2
PTCD2P1-201ENST00000554393 SRP68Q9UHB9 627 aaKnown RBP13.8□□□□□ -0.2
PTCD2P1-201ENST00000554393 PARP3Q9Y6F1 533 aa13.8□□□□□ -0.2
PTCD2P1-201ENST00000554393 AFDNP55196 1824 aaKnown RBP13.8□□□□□ -0.2
PTCD2P1-201ENST00000554393 PXDNLA1KZ92 1463 aa13.8□□□□□ -0.2
PTCD2P1-201ENST00000554393 ZPR1O75312 459 aa13.79□□□□□ -0.2
PTCD2P1-201ENST00000554393 YBX3P16989 372 aaKnown RBP eCLIP13.79□□□□□ -0.2
PTCD2P1-201ENST00000554393 TGFB2P61812 414 aa13.79□□□□□ -0.2
PTCD2P1-201ENST00000554393 PELP1Q8IZL8 1130 aaKnown RBP13.79□□□□□ -0.2
PTCD2P1-201ENST00000554393 NARFQ9UHQ1 456 aa13.79□□□□□ -0.2
PTCD2P1-201ENST00000554393 MAPK8IP3Q9UPT6 1336 aa13.79□□□□□ -0.2
PTCD2P1-201ENST00000554393 BCORQ6W2J9 1755 aa13.78□□□□□ -0.2
PTCD2P1-201ENST00000554393 A0A087WZG4 1122 aa13.78□□□□□ -0.2
PTCD2P1-201ENST00000554393 EIF5P55010 431 aaKnown RBP13.78□□□□□ -0.2
PTCD2P1-201ENST00000554393 NFE2L2Q16236 605 aa13.78□□□□□ -0.2
PTCD2P1-201ENST00000554393 ARFGEF1Q9Y6D6 1849 aa13.78□□□□□ -0.2
PTCD2P1-201ENST00000554393 TM4SF1P30408 202 aa13.77□□□□□ -0.21
PTCD2P1-201ENST00000554393 TAF7Q15545 349 aaPredicted RBP13.77□□□□□ -0.21
PTCD2P1-201ENST00000554393 USPL1Q5W0Q7 1092 aa13.77□□□□□ -0.21
PTCD2P1-201ENST00000554393 DLEC1Q9Y238 1755 aa13.76□□□□□ -0.21
PTCD2P1-201ENST00000554393 KCNQ3O43525 872 aa13.76□□□□□ -0.21
PTCD2P1-201ENST00000554393 CANXP27824 592 aaKnown RBP13.76□□□□□ -0.21
PTCD2P1-201ENST00000554393 IL6STP40189 918 aaPredicted RBP13.76□□□□□ -0.21
PTCD2P1-201ENST00000554393 DDR1Q08345 913 aa13.76□□□□□ -0.21
PTCD2P1-201ENST00000554393 DCTN1Q14203 1278 aa13.76□□□□□ -0.21
PTCD2P1-201ENST00000554393 TNS4Q8IZW8 715 aa13.76□□□□□ -0.21
PTCD2P1-201ENST00000554393 PNISRQ8TF01 805 aaKnown RBP13.76□□□□□ -0.21
PTCD2P1-201ENST00000554393 POLRMTO00411 1230 aaKnown RBP13.75□□□□□ -0.21
PTCD2P1-201ENST00000554393 SNRPA1P09661 255 aaKnown RBP13.75□□□□□ -0.21
PTCD2P1-201ENST00000554393 PRKRIP1Q9H875 184 aaPredicted RBP13.75□□□□□ -0.21
PTCD2P1-201ENST00000554393 BCL2L12Q9HB09 334 aa13.74□□□□□ -0.21
PTCD2P1-201ENST00000554393 ATP10DQ9P241 1426 aa13.73□□□□□ -0.21
PTCD2P1-201ENST00000554393 A1BGP04217 495 aa13.73□□□□□ -0.21
PTCD2P1-201ENST00000554393 NFIXQ14938 502 aa13.73□□□□□ -0.21
PTCD2P1-201ENST00000554393 RGL2O15211 777 aa13.72□□□□□ -0.21
PTCD2P1-201ENST00000554393 LMOD3Q0VAK6 560 aa13.72□□□□□ -0.21
PTCD2P1-201ENST00000554393 NPM2Q86SE8 214 aaKnown RBP13.72□□□□□ -0.21
PTCD2P1-201ENST00000554393 GPBP1L1Q9HC44 474 aaPredicted RBP13.72□□□□□ -0.21
PTCD2P1-201ENST00000554393 USP16Q9Y5T5 823 aa13.72□□□□□ -0.21
PTCD2P1-201ENST00000554393 A0A0G2JLW4 131 aa13.71□□□□□ -0.21
PTCD2P1-201ENST00000554393 DPEP1P16444 411 aa13.71□□□□□ -0.21
PTCD2P1-201ENST00000554393 WDR43Q15061 677 aaKnown RBP eCLIP13.71□□□□□ -0.21
PTCD2P1-201ENST00000554393 REM2Q8IYK8 340 aaPredicted RBP13.71□□□□□ -0.21
PTCD2P1-201ENST00000554393 ANKRD31Q8N7Z5 1873 aa13.71□□□□□ -0.21
PTCD2P1-201ENST00000554393 TMPOP42166 694 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms