RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 COL13A1Q5TAT6 717 aaPredicted RBP12.43□□□□□ -0.42
SYNE2-209ENST00000553308 DLEC1Q9Y238 1755 aa12.43□□□□□ -0.42
SYNE2-209ENST00000553308 COL15A1P39059 1388 aa12.43□□□□□ -0.42
SYNE2-209ENST00000553308 VIRMAQ69YN4 1812 aaKnown RBP12.42□□□□□ -0.42
SYNE2-209ENST00000553308 CYP19A1P11511 503 aaPredicted RBP12.42□□□□□ -0.42
SYNE2-209ENST00000553308 PRELPP51888 382 aa12.42□□□□□ -0.42
SYNE2-209ENST00000553308 SLC39A6Q13433 755 aa12.42□□□□□ -0.42
SYNE2-209ENST00000553308 NFIXQ14938 502 aa12.42□□□□□ -0.42
SYNE2-209ENST00000553308 AKAP4Q5JQC9 854 aa12.42□□□□□ -0.42
SYNE2-209ENST00000553308 SLC52A2Q9HAB3 445 aa12.42□□□□□ -0.42
SYNE2-209ENST00000553308 LGR6Q9HBX8 967 aa12.42□□□□□ -0.42
SYNE2-209ENST00000553308 TIAM2Q8IVF5 1701 aa12.42□□□□□ -0.42
SYNE2-209ENST00000553308 EIF4G2P78344 907 aaKnown RBP eCLIP12.41□□□□□ -0.42
SYNE2-209ENST00000553308 SMC1BQ8NDV3 1235 aa12.41□□□□□ -0.42
SYNE2-209ENST00000553308 BCL2L12Q9HB09 334 aa12.41□□□□□ -0.42
SYNE2-209ENST00000553308 ZBTB1Q9Y2K1 713 aa12.41□□□□□ -0.42
SYNE2-209ENST00000553308 CARMIL3Q8ND23 1372 aa12.41□□□□□ -0.42
SYNE2-209ENST00000553308 RNMTO43148 476 aaKnown RBP12.4□□□□□ -0.42
SYNE2-209ENST00000553308 NARFQ9UHQ1 456 aa12.4□□□□□ -0.42
SYNE2-209ENST00000553308 ZC3H4Q9UPT8 1303 aaKnown RBP12.39□□□□□ -0.43
SYNE2-209ENST00000553308 SERPINB2P05120 415 aa12.39□□□□□ -0.43
SYNE2-209ENST00000553308 HMOX1P09601 288 aa12.39□□□□□ -0.43
SYNE2-209ENST00000553308 UBR2Q8IWV8 1755 aa12.38□□□□□ -0.43
SYNE2-209ENST00000553308 GLTPD2A6NH11 291 aa12.38□□□□□ -0.43
SYNE2-209ENST00000553308 LMNB1P20700 586 aa12.38□□□□□ -0.43
SYNE2-209ENST00000553308 KNSTRNQ9Y448 316 aa12.38□□□□□ -0.43
SYNE2-209ENST00000553308 CLSPNQ9HAW4 1339 aa12.37□□□□□ -0.43
SYNE2-209ENST00000553308 NFKBIEO00221 500 aa12.37□□□□□ -0.43
SYNE2-209ENST00000553308 CAPN15O75808 1086 aa12.37□□□□□ -0.43
SYNE2-209ENST00000553308 CANXP27824 592 aaKnown RBP12.37□□□□□ -0.43
SYNE2-209ENST00000553308 C2CD5Q86YS7 1000 aa12.37□□□□□ -0.43
SYNE2-209ENST00000553308 TTLL6Q8N841 843 aa12.37□□□□□ -0.43
SYNE2-209ENST00000553308 CCDC88AQ3V6T2 1871 aa12.37□□□□□ -0.43
SYNE2-209ENST00000553308 ANKRD31Q8N7Z5 1873 aa12.37□□□□□ -0.43
SYNE2-209ENST00000553308 SCN7AQ01118 1682 aa12.36□□□□□ -0.43
SYNE2-209ENST00000553308 VEGFAP15692 232 aaPredicted RBP12.36□□□□□ -0.43
SYNE2-209ENST00000553308 MTHFSDQ2M296 383 aaKnown RBP12.36□□□□□ -0.43
SYNE2-209ENST00000553308 AMER1Q5JTC6 1135 aaPredicted RBP12.36□□□□□ -0.43
SYNE2-209ENST00000553308 BICDL1Q6ZP65 573 aa12.36□□□□□ -0.43
SYNE2-209ENST00000553308 PCGF6Q9BYE7 350 aa12.36□□□□□ -0.43
SYNE2-209ENST00000553308 COL11A2P13942 1736 aaPredicted RBP12.36□□□□□ -0.43
SYNE2-209ENST00000553308 H0YIN7 160 aa12.35□□□□□ -0.43
SYNE2-209ENST00000553308 TNS4Q8IZW8 715 aa12.35□□□□□ -0.43
SYNE2-209ENST00000553308 VSIG10Q8N0Z9 540 aa12.35□□□□□ -0.43
SYNE2-209ENST00000553308 POTECB2RU33 542 aa12.34□□□□□ -0.43
SYNE2-209ENST00000553308 HSPA1AP0DMV8 641 aaKnown RBP12.34□□□□□ -0.43
SYNE2-209ENST00000553308 HSPA1BP0DMV9 641 aaKnown RBP12.34□□□□□ -0.43
SYNE2-209ENST00000553308 TBC1D9BQ66K14 1250 aa12.34□□□□□ -0.43
SYNE2-209ENST00000553308 ZNF219Q9P2Y4 722 aaPredicted RBP12.34□□□□□ -0.43
SYNE2-209ENST00000553308 EIF5P55010 431 aaKnown RBP12.33□□□□□ -0.44
SYNE2-209ENST00000553308 CCDC24Q8N4L8 307 aa12.33□□□□□ -0.44
SYNE2-209ENST00000553308 FER1L6Q2WGJ9 1857 aa12.32□□□□□ -0.44
SYNE2-209ENST00000553308 C21orf2O43822 256 aa12.32□□□□□ -0.44
SYNE2-209ENST00000553308 TTC5Q8N0Z6 440 aa12.32□□□□□ -0.44
SYNE2-209ENST00000553308 ZNF622Q969S3 477 aaKnown RBP eCLIP12.32□□□□□ -0.44
SYNE2-209ENST00000553308 ZNF496Q96IT1 587 aaPredicted RBP12.32□□□□□ -0.44
SYNE2-209ENST00000553308 ZNF330Q9Y3S2 320 aaPredicted RBP12.32□□□□□ -0.44
SYNE2-209ENST00000553308 HEG1Q9ULI3 1381 aa12.31□□□□□ -0.44
SYNE2-209ENST00000553308 DICER1Q9UPY3 1922 aaKnown RBP12.31□□□□□ -0.44
SYNE2-209ENST00000553308 SIPA1L3O60292 1781 aaPredicted RBP12.31□□□□□ -0.44
SYNE2-209ENST00000553308 A0A087WZG4 1122 aa12.31□□□□□ -0.44
SYNE2-209ENST00000553308 DIAPH1O60610 1272 aaKnown RBP12.31□□□□□ -0.44
SYNE2-209ENST00000553308 STARD3NLO95772 234 aa12.31□□□□□ -0.44
SYNE2-209ENST00000553308 PRR5LQ6MZQ0 368 aa12.31□□□□□ -0.44
SYNE2-209ENST00000553308 TBC1D2BQ9UPU7 963 aa12.31□□□□□ -0.44
SYNE2-209ENST00000553308 COL3A1P02461 1466 aaPredicted RBP12.31□□□□□ -0.44
SYNE2-209ENST00000553308 KIF7Q2M1P5 1343 aa12.31□□□□□ -0.44
SYNE2-209ENST00000553308 CACNA1SQ13698 1873 aa12.3□□□□□ -0.44
SYNE2-209ENST00000553308 PDE6BP35913 854 aa12.3□□□□□ -0.44
SYNE2-209ENST00000553308 ERFEQ4G0M1 354 aa12.3□□□□□ -0.44
SYNE2-209ENST00000553308 DPY19L2Q6NUT2 758 aa12.3□□□□□ -0.44
SYNE2-209ENST00000553308 BRIP1Q9BX63 1249 aa12.3□□□□□ -0.44
SYNE2-209ENST00000553308 BCORQ6W2J9 1755 aa12.29□□□□□ -0.44
SYNE2-209ENST00000553308 POTEIP0CG38 1075 aa12.29□□□□□ -0.44
SYNE2-209ENST00000553308 POTEJP0CG39 1038 aa12.29□□□□□ -0.44
SYNE2-209ENST00000553308 CC2D1BQ5T0F9 858 aaKnown RBP12.29□□□□□ -0.44
SYNE2-209ENST00000553308 ZNF790Q6PG37 636 aa12.29□□□□□ -0.44
SYNE2-209ENST00000553308 IL17REQ8NFR9 667 aa12.29□□□□□ -0.44
SYNE2-209ENST00000553308 SLX4Q8IY92 1834 aa12.29□□□□□ -0.44
SYNE2-209ENST00000553308 LTBP3Q9NS15 1303 aa12.29□□□□□ -0.44
SYNE2-209ENST00000553308 ARFGEF2Q9Y6D5 1785 aa12.28□□□□□ -0.44
SYNE2-209ENST00000553308 CAMTA2O94983 1202 aa12.28□□□□□ -0.44
SYNE2-209ENST00000553308 TEFQ10587 303 aa12.28□□□□□ -0.44
SYNE2-209ENST00000553308 CNBD1Q8NA66 436 aa12.28□□□□□ -0.44
SYNE2-209ENST00000553308 TAOK3Q9H2K8 898 aa12.28□□□□□ -0.44
SYNE2-209ENST00000553308 PDZRN3Q9UPQ7 1066 aa12.28□□□□□ -0.44
SYNE2-209ENST00000553308 U2SURPO15042 1029 aaKnown RBP12.27□□□□□ -0.45
SYNE2-209ENST00000553308 PER1O15534 1290 aaPredicted RBP12.27□□□□□ -0.45
SYNE2-209ENST00000553308 DDNO94850 711 aaPredicted RBP12.27□□□□□ -0.45
SYNE2-209ENST00000553308 A1BGP04217 495 aa12.27□□□□□ -0.45
SYNE2-209ENST00000553308 IL6STP40189 918 aaPredicted RBP12.27□□□□□ -0.45
SYNE2-209ENST00000553308 CHADLQ6NUI6 762 aa12.27□□□□□ -0.45
SYNE2-209ENST00000553308 PRPF40BQ6NWY9 871 aaKnown RBP12.27□□□□□ -0.45
SYNE2-209ENST00000553308 TEX13AQ9BXU3 409 aaPredicted RBP12.27□□□□□ -0.45
SYNE2-209ENST00000553308 MKRN1Q9UHC7 482 aaKnown RBP12.27□□□□□ -0.45
SYNE2-209ENST00000553308 GNAT3A8MTJ3 354 aa12.26□□□□□ -0.45
SYNE2-209ENST00000553308 NPHP1O15259 732 aa12.26□□□□□ -0.45
SYNE2-209ENST00000553308 KCNQ3O43525 872 aa12.26□□□□□ -0.45
SYNE2-209ENST00000553308 STYK1Q6J9G0 422 aa12.26□□□□□ -0.45
SYNE2-209ENST00000553308 GAS2L2Q8NHY3 880 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms