RNA–Protein interactions for RNA: ENST00000553290.1

ACTN1-207, Transcript of actinin alpha 1, humanhuman

TSL 5

Gene ACTN1, Length 619 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-207ENST00000553290 COL15A1P39059 1388 aa17.2■□□□□ 0.34
ACTN1-207ENST00000553290 KIF13BQ9NQT8 1826 aa17.2■□□□□ 0.34
ACTN1-207ENST00000553290 MCM10Q7L590 875 aa17.2■□□□□ 0.34
ACTN1-207ENST00000553290 TGFB2P61812 414 aa17.19■□□□□ 0.34
ACTN1-207ENST00000553290 FKBP8Q14318 412 aa17.19■□□□□ 0.34
ACTN1-207ENST00000553290 NARFQ9UHQ1 456 aa17.19■□□□□ 0.34
ACTN1-207ENST00000553290 CANXP27824 592 aaKnown RBP17.18■□□□□ 0.34
ACTN1-207ENST00000553290 USPL1Q5W0Q7 1092 aa17.18■□□□□ 0.34
ACTN1-207ENST00000553290 PLEKHF1Q96S99 279 aa17.18■□□□□ 0.34
ACTN1-207ENST00000553290 C10orf71Q711Q0 1435 aa17.18■□□□□ 0.34
ACTN1-207ENST00000553290 A0A087WZG4 1122 aa17.17■□□□□ 0.34
ACTN1-207ENST00000553290 DCTN1Q14203 1278 aa17.17■□□□□ 0.34
ACTN1-207ENST00000553290 MYBBP1AQ9BQG0 1328 aaKnown RBP17.17■□□□□ 0.34
ACTN1-207ENST00000553290 DLG5Q8TDM6 1919 aa17.16■□□□□ 0.34
ACTN1-207ENST00000553290 KCNQ3O43525 872 aa17.16■□□□□ 0.34
ACTN1-207ENST00000553290 TM4SF1P30408 202 aa17.16■□□□□ 0.34
ACTN1-207ENST00000553290 ZEB1P37275 1124 aaPredicted RBP17.16■□□□□ 0.34
ACTN1-207ENST00000553290 EIF5P55010 431 aaKnown RBP17.16■□□□□ 0.34
ACTN1-207ENST00000553290 ZNF784Q8NCA9 323 aaPredicted RBP17.16■□□□□ 0.34
ACTN1-207ENST00000553290 PXDNLA1KZ92 1463 aa17.16■□□□□ 0.34
ACTN1-207ENST00000553290 MAPK8IP3Q9UPT6 1336 aa17.16■□□□□ 0.34
ACTN1-207ENST00000553290 DDR1Q08345 913 aa17.15■□□□□ 0.34
ACTN1-207ENST00000553290 TAF7Q15545 349 aaPredicted RBP17.15■□□□□ 0.34
ACTN1-207ENST00000553290 NFE2L2Q16236 605 aa17.15■□□□□ 0.34
ACTN1-207ENST00000553290 KIAA1551Q9HCM1 1747 aa17.14■□□□□ 0.33
ACTN1-207ENST00000553290 POLRMTO00411 1230 aaKnown RBP17.14■□□□□ 0.33
ACTN1-207ENST00000553290 IL6STP40189 918 aaPredicted RBP17.14■□□□□ 0.33
ACTN1-207ENST00000553290 NPM2Q86SE8 214 aaKnown RBP17.14■□□□□ 0.33
ACTN1-207ENST00000553290 N4BP2Q86UW6 1770 aaPredicted RBP17.14■□□□□ 0.33
ACTN1-207ENST00000553290 A0A0G2JLW4 131 aa17.13■□□□□ 0.33
ACTN1-207ENST00000553290 SNRPA1P09661 255 aaKnown RBP17.13■□□□□ 0.33
ACTN1-207ENST00000553290 PNISRQ8TF01 805 aaKnown RBP17.13■□□□□ 0.33
ACTN1-207ENST00000553290 A1BGP04217 495 aa17.12■□□□□ 0.33
ACTN1-207ENST00000553290 NFIXQ14938 502 aa17.12■□□□□ 0.33
ACTN1-207ENST00000553290 BCL2L12Q9HB09 334 aa17.12■□□□□ 0.33
ACTN1-207ENST00000553290 WWC3Q9ULE0 1092 aa17.12■□□□□ 0.33
ACTN1-207ENST00000553290 DPEP1P16444 411 aa17.11■□□□□ 0.33
ACTN1-207ENST00000553290 ZNF330Q9Y3S2 320 aaPredicted RBP17.11■□□□□ 0.33
ACTN1-207ENST00000553290 USP16Q9Y5T5 823 aa17.11■□□□□ 0.33
ACTN1-207ENST00000553290 PRAMEF22A3QJZ6 481 aa17.09■□□□□ 0.33
ACTN1-207ENST00000553290 SERPINB2P05120 415 aa17.09■□□□□ 0.33
ACTN1-207ENST00000553290 PRKRIP1Q9H875 184 aaPredicted RBP17.09■□□□□ 0.33
ACTN1-207ENST00000553290 MIS18AQ9NYP9 233 aa17.09■□□□□ 0.33
ACTN1-207ENST00000553290 TBC1D2BQ9UPU7 963 aa17.09■□□□□ 0.33
ACTN1-207ENST00000553290 BCS1LQ9Y276 419 aa17.09■□□□□ 0.33
ACTN1-207ENST00000553290 AFDNP55196 1824 aaKnown RBP17.09■□□□□ 0.33
ACTN1-207ENST00000553290 BRCA1P38398 1863 aaKnown RBP17.08■□□□□ 0.33
ACTN1-207ENST00000553290 NRXN2Q9P2S2 1712 aa17.08■□□□□ 0.32
ACTN1-207ENST00000553290 SCN7AQ01118 1682 aa17.08■□□□□ 0.32
ACTN1-207ENST00000553290 KCNA3P22001 575 aa17.08■□□□□ 0.32
ACTN1-207ENST00000553290 PIM2Q9P1W9 311 aa17.08■□□□□ 0.32
ACTN1-207ENST00000553290 KDM3BQ7LBC6 1761 aa17.07■□□□□ 0.32
ACTN1-207ENST00000553290 RIPK4P57078 832 aa17.07■□□□□ 0.32
ACTN1-207ENST00000553290 LMOD3Q0VAK6 560 aa17.07■□□□□ 0.32
ACTN1-207ENST00000553290 WDR43Q15061 677 aaKnown RBP eCLIP17.07■□□□□ 0.32
ACTN1-207ENST00000553290 TMPOP42166 694 aaKnown RBP17.06■□□□□ 0.32
ACTN1-207ENST00000553290 TBC1D9BQ66K14 1250 aa17.06■□□□□ 0.32
ACTN1-207ENST00000553290 BICDL1Q6ZP65 573 aa17.06■□□□□ 0.32
ACTN1-207ENST00000553290 DZIP3Q86Y13 1208 aaKnown RBP17.06■□□□□ 0.32
ACTN1-207ENST00000553290 THUMPD2Q9BTF0 503 aaKnown RBP17.06■□□□□ 0.32
ACTN1-207ENST00000553290 CAMTA2O94983 1202 aa17.05■□□□□ 0.32
ACTN1-207ENST00000553290 EIF4A1P60842 406 aaKnown RBP17.05■□□□□ 0.32
ACTN1-207ENST00000553290 DALRD3Q5D0E6 543 aaKnown RBP17.05■□□□□ 0.32
ACTN1-207ENST00000553290 LAMB4A4D0S4 1761 aa17.05■□□□□ 0.32
ACTN1-207ENST00000553290 GIGYF1O75420 1035 aaPredicted RBP17.04■□□□□ 0.32
ACTN1-207ENST00000553290 CHRNA5P30532 468 aa17.04■□□□□ 0.32
ACTN1-207ENST00000553290 PIP4K2AP48426 406 aaPredicted RBP17.04■□□□□ 0.32
ACTN1-207ENST00000553290 RUNDC1Q96C34 613 aa17.04■□□□□ 0.32
ACTN1-207ENST00000553290 ARFGEF1Q9Y6D6 1849 aa17.04■□□□□ 0.32
ACTN1-207ENST00000553290 BCORQ6W2J9 1755 aa17.04■□□□□ 0.32
ACTN1-207ENST00000553290 CARMIL3Q8ND23 1372 aa17.03■□□□□ 0.32
ACTN1-207ENST00000553290 NBPF26B4DH59 902 aa17.03■□□□□ 0.32
ACTN1-207ENST00000553290 NBPF10Q6P3W6 841 aaKnown RBP17.03■□□□□ 0.32
ACTN1-207ENST00000553290 CLEC4GQ6UXB4 293 aa17.03■□□□□ 0.32
ACTN1-207ENST00000553290 ARHGAP27Q6ZUM4 889 aa17.03■□□□□ 0.32
ACTN1-207ENST00000553290 NBPF15Q8N660 670 aa17.03■□□□□ 0.32
ACTN1-207ENST00000553290 SETDB2Q96T68 719 aa17.03■□□□□ 0.32
ACTN1-207ENST00000553290 BABAM1Q9NWV8 329 aa17.03■□□□□ 0.32
ACTN1-207ENST00000553290 ZNF652Q9Y2D9 606 aa17.03■□□□□ 0.32
ACTN1-207ENST00000553290 ADCY9O60503 1353 aa17.02■□□□□ 0.32
ACTN1-207ENST00000553290 RGL2O15211 777 aa17.02■□□□□ 0.32
ACTN1-207ENST00000553290 CCDC146Q8IYE0 955 aa17.02■□□□□ 0.32
ACTN1-207ENST00000553290 TSPYL4Q9UJ04 414 aa17.02■□□□□ 0.32
ACTN1-207ENST00000553290 ADAMTS8Q9UP79 889 aa17.02■□□□□ 0.32
ACTN1-207ENST00000553290 ATP10DQ9P241 1426 aa17.02■□□□□ 0.31
ACTN1-207ENST00000553290 PDZRN3Q9UPQ7 1066 aa17.01■□□□□ 0.31
ACTN1-207ENST00000553290 H0YIN7 160 aa17■□□□□ 0.31
ACTN1-207ENST00000553290 PDE6BP35913 854 aa17■□□□□ 0.31
ACTN1-207ENST00000553290 NEUROD2Q15784 382 aa17■□□□□ 0.31
ACTN1-207ENST00000553290 BRIP1Q9BX63 1249 aa17■□□□□ 0.31
ACTN1-207ENST00000553290 RRP7AQ9Y3A4 280 aaKnown RBP17■□□□□ 0.31
ACTN1-207ENST00000553290 DLEC1Q9Y238 1755 aa17■□□□□ 0.31
ACTN1-207ENST00000553290 NPHP1O15259 732 aa16.99■□□□□ 0.31
ACTN1-207ENST00000553290 PRR5LQ6MZQ0 368 aa16.99■□□□□ 0.31
ACTN1-207ENST00000553290 C2CD5Q86YS7 1000 aa16.99■□□□□ 0.31
ACTN1-207ENST00000553290 CNBD1Q8NA66 436 aa16.99■□□□□ 0.31
ACTN1-207ENST00000553290 TTLL6Q8N841 843 aa16.98■□□□□ 0.31
ACTN1-207ENST00000553290 GPBP1L1Q9HC44 474 aaPredicted RBP16.98■□□□□ 0.31
ACTN1-207ENST00000553290 ERBB4Q15303 1308 aa16.97■□□□□ 0.31
ACTN1-207ENST00000553290 ANKRD31Q8N7Z5 1873 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms