RNA–Protein interactions for RNA: ENST00000551269.1

PRPF40B-213, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 923 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-213ENST00000551269 CHMP4AQ9BY43 222 aa15.11■□□□□ 0.01
PRPF40B-213ENST00000551269 AFDNP55196 1824 aaKnown RBP15.1■□□□□ 0.01
PRPF40B-213ENST00000551269 ELL2O00472 640 aaPredicted RBP15.1■□□□□ 0.01
PRPF40B-213ENST00000551269 HDGFL1Q5TGJ6 251 aa15.1■□□□□ 0.01
PRPF40B-213ENST00000551269 N4BP2Q86UW6 1770 aaPredicted RBP15.09■□□□□ 0.01
PRPF40B-213ENST00000551269 NUP98P52948 1817 aa15.09■□□□□ 0.01
PRPF40B-213ENST00000551269 EIF2S2P20042 333 aaKnown RBP15.09■□□□□ 0.01
PRPF40B-213ENST00000551269 KCNQ4P56696 695 aa15.09■□□□□ 0.01
PRPF40B-213ENST00000551269 ITPK1Q13572 414 aa15.09■□□□□ 0.01
PRPF40B-213ENST00000551269 TRMT2AQ8IZ69 625 aaKnown RBP15.09■□□□□ 0.01
PRPF40B-213ENST00000551269 C8orf58Q8NAV2 365 aa15.09■□□□□ 0.01
PRPF40B-213ENST00000551269 AK7Q96M32 723 aa15.09■□□□□ 0.01
PRPF40B-213ENST00000551269 SLC4A9Q96Q91 983 aa15.09■□□□□ 0.01
PRPF40B-213ENST00000551269 CAMKK2Q96RR4 588 aa15.09■□□□□ 0.01
PRPF40B-213ENST00000551269 CNTNAP4Q9C0A0 1308 aa15.09■□□□□ 0.01
PRPF40B-213ENST00000551269 PRAMEF22A3QJZ6 481 aa15.08■□□□□ 0
PRPF40B-213ENST00000551269 LINC00116Q8NCU8 138 aa15.08■□□□□ 0
PRPF40B-213ENST00000551269 ERBB4Q15303 1308 aa15.08■□□□□ 0
PRPF40B-213ENST00000551269 CT47B1P0C2W7 299 aaPredicted RBP15.07■□□□□ 0
PRPF40B-213ENST00000551269 CRKLP46109 303 aaKnown RBP15.07■□□□□ 0
PRPF40B-213ENST00000551269 CCDC30Q5VVM6 783 aa15.07■□□□□ 0
PRPF40B-213ENST00000551269 NPM2Q86SE8 214 aaKnown RBP15.07■□□□□ 0
PRPF40B-213ENST00000551269 TSPYL6Q8N831 410 aa15.07■□□□□ 0
PRPF40B-213ENST00000551269 NECTIN2Q92692 538 aa15.07■□□□□ 0
PRPF40B-213ENST00000551269 STK31Q9BXU1 1019 aa15.07■□□□□ 0
PRPF40B-213ENST00000551269 LRRC4BQ9NT99 713 aa15.07■□□□□ 0
PRPF40B-213ENST00000551269 CYP19A1P11511 503 aaPredicted RBP15.06■□□□□ 0
PRPF40B-213ENST00000551269 CCDC87Q9NVE4 849 aa15.06■□□□□ 0
PRPF40B-213ENST00000551269 USP16Q9Y5T5 823 aa15.06■□□□□ 0
PRPF40B-213ENST00000551269 GNPATO15228 680 aa15.05■□□□□ -0
PRPF40B-213ENST00000551269 ZNF428Q96B54 188 aa15.05■□□□□ -0
PRPF40B-213ENST00000551269 STK32BQ9NY57 414 aa15.05■□□□□ -0
PRPF40B-213ENST00000551269 ZBTB1Q9Y2K1 713 aa15.05■□□□□ -0
PRPF40B-213ENST00000551269 ZNF330Q9Y3S2 320 aaPredicted RBP15.05■□□□□ -0
PRPF40B-213ENST00000551269 CASZ1Q86V15 1759 aa15.05■□□□□ -0
PRPF40B-213ENST00000551269 COL15A1P39059 1388 aa15.04■□□□□ -0
PRPF40B-213ENST00000551269 NBPF14Q5TI25 921 aa15.04■□□□□ -0
PRPF40B-213ENST00000551269 PROM2Q8N271 834 aa15.04■□□□□ -0
PRPF40B-213ENST00000551269 DBF4Q9UBU7 674 aaPredicted RBP15.04■□□□□ -0
PRPF40B-213ENST00000551269 VAMP4O75379 141 aa15.03■□□□□ -0
PRPF40B-213ENST00000551269 MYL6BP14649 208 aa15.03■□□□□ -0
PRPF40B-213ENST00000551269 CANXP27824 592 aaKnown RBP15.03■□□□□ -0
PRPF40B-213ENST00000551269 RC3H1Q5TC82 1133 aaKnown RBP15.03■□□□□ -0
PRPF40B-213ENST00000551269 CHPF2Q9P2E5 772 aa15.03■□□□□ -0
PRPF40B-213ENST00000551269 RTCBQ9Y3I0 505 aaKnown RBP15.03■□□□□ -0
PRPF40B-213ENST00000551269 A1BGP04217 495 aa15.02■□□□□ -0
PRPF40B-213ENST00000551269 PIP4K2AP48426 406 aaPredicted RBP15.02■□□□□ -0
PRPF40B-213ENST00000551269 DDX21Q9NR30 783 aaKnown RBP eCLIP15.02■□□□□ -0
PRPF40B-213ENST00000551269 SMC4Q9NTJ3 1288 aa15.02■□□□□ -0
PRPF40B-213ENST00000551269 SOCS7O14512 581 aa15.01□□□□□ -0.01
PRPF40B-213ENST00000551269 TCERG1O14776 1098 aaKnown RBP15.01□□□□□ -0.01
PRPF40B-213ENST00000551269 PHF14O94880 888 aa15.01□□□□□ -0.01
PRPF40B-213ENST00000551269 IL6STP40189 918 aaPredicted RBP15.01□□□□□ -0.01
PRPF40B-213ENST00000551269 ZNF827Q17R98 1081 aa15.01□□□□□ -0.01
PRPF40B-213ENST00000551269 ALDH1L2Q3SY69 923 aa15.01□□□□□ -0.01
PRPF40B-213ENST00000551269 ANO8Q9HCE9 1232 aaPredicted RBP15.01□□□□□ -0.01
PRPF40B-213ENST00000551269 TFCP2L1Q9NZI6 479 aa15.01□□□□□ -0.01
PRPF40B-213ENST00000551269 KIF16BQ96L93 1317 aa15□□□□□ -0.01
PRPF40B-213ENST00000551269 SSFA2P28290 1259 aa15□□□□□ -0.01
PRPF40B-213ENST00000551269 INTS5Q6P9B9 1019 aaKnown RBP15□□□□□ -0.01
PRPF40B-213ENST00000551269 AKT1S1Q96B36 256 aa15□□□□□ -0.01
PRPF40B-213ENST00000551269 BCL2L13Q9BXK5 485 aa15□□□□□ -0.01
PRPF40B-213ENST00000551269 HYPKQ9NX55 129 aa15□□□□□ -0.01
PRPF40B-213ENST00000551269 COL24A1Q17RW2 1714 aa15□□□□□ -0.01
PRPF40B-213ENST00000551269 A0A087WZG4 1122 aa14.99□□□□□ -0.01
PRPF40B-213ENST00000551269 RPS6KA4O75676 772 aa14.99□□□□□ -0.01
PRPF40B-213ENST00000551269 ANXA1P04083 346 aa14.99□□□□□ -0.01
PRPF40B-213ENST00000551269 ADRA2BP18089 450 aa14.99□□□□□ -0.01
PRPF40B-213ENST00000551269 SLC15A2Q16348 729 aa14.99□□□□□ -0.01
PRPF40B-213ENST00000551269 KIF6Q6ZMV9 814 aa14.99□□□□□ -0.01
PRPF40B-213ENST00000551269 FLAD1Q8NFF5 587 aa14.99□□□□□ -0.01
PRPF40B-213ENST00000551269 ARXQ96QS3 562 aa14.99□□□□□ -0.01
PRPF40B-213ENST00000551269 NBPF26B4DH59 902 aa14.98□□□□□ -0.01
PRPF40B-213ENST00000551269 PROSER3Q2NL68 480 aa14.98□□□□□ -0.01
PRPF40B-213ENST00000551269 NBPF10Q6P3W6 841 aaKnown RBP14.98□□□□□ -0.01
PRPF40B-213ENST00000551269 NBPF15Q8N660 670 aa14.98□□□□□ -0.01
PRPF40B-213ENST00000551269 RCAN3Q9UKA8 241 aa14.98□□□□□ -0.01
PRPF40B-213ENST00000551269 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.97□□□□□ -0.01
PRPF40B-213ENST00000551269 MSH5O43196 834 aa14.97□□□□□ -0.01
PRPF40B-213ENST00000551269 DDX58O95786 925 aaKnown RBP14.97□□□□□ -0.01
PRPF40B-213ENST00000551269 SLC4A2P04920 1241 aa14.97□□□□□ -0.01
PRPF40B-213ENST00000551269 CENPBP07199 599 aaPredicted RBP14.97□□□□□ -0.01
PRPF40B-213ENST00000551269 RARSP54136 660 aaKnown RBP14.97□□□□□ -0.01
PRPF40B-213ENST00000551269 AIMP1Q12904 312 aaKnown RBP14.97□□□□□ -0.01
PRPF40B-213ENST00000551269 DZIP3Q86Y13 1208 aaKnown RBP14.97□□□□□ -0.01
PRPF40B-213ENST00000551269 SSH1Q8WYL5 1049 aa14.97□□□□□ -0.01
PRPF40B-213ENST00000551269 LAMB2P55268 1798 aa14.96□□□□□ -0.01
PRPF40B-213ENST00000551269 MYH3P11055 1940 aa14.96□□□□□ -0.01
PRPF40B-213ENST00000551269 RFC4P35249 363 aa14.96□□□□□ -0.01
PRPF40B-213ENST00000551269 EIF5P55010 431 aaKnown RBP14.96□□□□□ -0.01
PRPF40B-213ENST00000551269 PDIA6Q15084 440 aa14.96□□□□□ -0.01
PRPF40B-213ENST00000551269 TRAPPC3LQ5T215 181 aa14.96□□□□□ -0.01
PRPF40B-213ENST00000551269 PXDNLA1KZ92 1463 aa14.95□□□□□ -0.02
PRPF40B-213ENST00000551269 PNPLA7Q6ZV29 1317 aa14.95□□□□□ -0.02
PRPF40B-213ENST00000551269 ZPR1O75312 459 aa14.95□□□□□ -0.02
PRPF40B-213ENST00000551269 FLIIQ13045 1269 aa14.95□□□□□ -0.02
PRPF40B-213ENST00000551269 FKBP5Q13451 457 aaPredicted RBP14.95□□□□□ -0.02
PRPF40B-213ENST00000551269 MRPL50Q8N5N7 158 aaKnown RBP14.95□□□□□ -0.02
PRPF40B-213ENST00000551269 XAGE3Q8WTP9 111 aa14.95□□□□□ -0.02
PRPF40B-213ENST00000551269 ZNF652Q9Y2D9 606 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms