RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 NARFQ9UHQ1 456 aa17.38■□□□□ 0.37
PTCH1-221ENST00000550914 SLC39A6Q13433 755 aa17.37■□□□□ 0.37
PTCH1-221ENST00000550914 USPL1Q5W0Q7 1092 aa17.37■□□□□ 0.37
PTCH1-221ENST00000550914 COL15A1P39059 1388 aa17.37■□□□□ 0.37
PTCH1-221ENST00000550914 COL3A1P02461 1466 aaPredicted RBP17.37■□□□□ 0.37
PTCH1-221ENST00000550914 SIPA1L3O60292 1781 aaPredicted RBP17.36■□□□□ 0.37
PTCH1-221ENST00000550914 DLEC1Q9Y238 1755 aa17.36■□□□□ 0.37
PTCH1-221ENST00000550914 TOMM70O94826 608 aa17.36■□□□□ 0.37
PTCH1-221ENST00000550914 CC2D1BQ5T0F9 858 aaKnown RBP17.36■□□□□ 0.37
PTCH1-221ENST00000550914 C9orf131Q5VYM1 1079 aa17.35■□□□□ 0.37
PTCH1-221ENST00000550914 ZBTB1Q9Y2K1 713 aa17.34■□□□□ 0.37
PTCH1-221ENST00000550914 STARD3NLO95772 234 aa17.33■□□□□ 0.36
PTCH1-221ENST00000550914 CHRNA5P30532 468 aa17.33■□□□□ 0.36
PTCH1-221ENST00000550914 APLP1P51693 650 aa17.33■□□□□ 0.36
PTCH1-221ENST00000550914 NFIXQ14938 502 aa17.33■□□□□ 0.36
PTCH1-221ENST00000550914 TTC5Q8N0Z6 440 aa17.33■□□□□ 0.36
PTCH1-221ENST00000550914 GAS2L2Q8NHY3 880 aa17.33■□□□□ 0.36
PTCH1-221ENST00000550914 TEX13AQ9BXU3 409 aaPredicted RBP17.32■□□□□ 0.36
PTCH1-221ENST00000550914 NMRK2Q9NPI5 230 aa17.32■□□□□ 0.36
PTCH1-221ENST00000550914 TNRC6CQ9HCJ0 1690 aaKnown RBP17.32■□□□□ 0.36
PTCH1-221ENST00000550914 KDM2BQ8NHM5 1336 aa17.31■□□□□ 0.36
PTCH1-221ENST00000550914 ZC3H4Q9UPT8 1303 aaKnown RBP17.31■□□□□ 0.36
PTCH1-221ENST00000550914 A0A087WZG4 1122 aa17.31■□□□□ 0.36
PTCH1-221ENST00000550914 GNAT3A8MTJ3 354 aa17.31■□□□□ 0.36
PTCH1-221ENST00000550914 TEFQ10587 303 aa17.31■□□□□ 0.36
PTCH1-221ENST00000550914 RBM46Q8TBY0 533 aaKnown RBP17.31■□□□□ 0.36
PTCH1-221ENST00000550914 BCL2L12Q9HB09 334 aa17.31■□□□□ 0.36
PTCH1-221ENST00000550914 U2SURPO15042 1029 aaKnown RBP17.3■□□□□ 0.36
PTCH1-221ENST00000550914 SERPINB2P05120 415 aa17.3■□□□□ 0.36
PTCH1-221ENST00000550914 EIF5P55010 431 aaKnown RBP17.3■□□□□ 0.36
PTCH1-221ENST00000550914 IFFO2Q5TF58 517 aa17.3■□□□□ 0.36
PTCH1-221ENST00000550914 ZNF790Q6PG37 636 aa17.3■□□□□ 0.36
PTCH1-221ENST00000550914 RNF181Q9P0P0 153 aa17.3■□□□□ 0.36
PTCH1-221ENST00000550914 SCN7AQ01118 1682 aa17.29■□□□□ 0.36
PTCH1-221ENST00000550914 HEG1Q9ULI3 1381 aa17.29■□□□□ 0.36
PTCH1-221ENST00000550914 IL17REQ8NFR9 667 aa17.29■□□□□ 0.36
PTCH1-221ENST00000550914 CCDC88AQ3V6T2 1871 aa17.29■□□□□ 0.36
PTCH1-221ENST00000550914 CEMIPQ8WUJ3 1361 aa17.28■□□□□ 0.36
PTCH1-221ENST00000550914 CANXP27824 592 aaKnown RBP17.28■□□□□ 0.36
PTCH1-221ENST00000550914 ZNF496Q96IT1 587 aaPredicted RBP17.28■□□□□ 0.36
PTCH1-221ENST00000550914 C16orf71Q8IYS4 520 aaPredicted RBP17.27■□□□□ 0.36
PTCH1-221ENST00000550914 TTLL6Q8N841 843 aa17.27■□□□□ 0.36
PTCH1-221ENST00000550914 PDZRN3Q9UPQ7 1066 aa17.27■□□□□ 0.36
PTCH1-221ENST00000550914 WDR90Q96KV7 1748 aa17.27■□□□□ 0.35
PTCH1-221ENST00000550914 ANKRD31Q8N7Z5 1873 aa17.27■□□□□ 0.35
PTCH1-221ENST00000550914 IL6STP40189 918 aaPredicted RBP17.26■□□□□ 0.35
PTCH1-221ENST00000550914 FSTL1Q12841 308 aa17.26■□□□□ 0.35
PTCH1-221ENST00000550914 CFAP53Q96M91 514 aa17.26■□□□□ 0.35
PTCH1-221ENST00000550914 FMNL2Q96PY5 1086 aa17.26■□□□□ 0.35
PTCH1-221ENST00000550914 H0YIN7 160 aa17.25■□□□□ 0.35
PTCH1-221ENST00000550914 LMNB1P20700 586 aa17.25■□□□□ 0.35
PTCH1-221ENST00000550914 DNAJC5GQ8N7S2 189 aa17.25■□□□□ 0.35
PTCH1-221ENST00000550914 DICER1Q9UPY3 1922 aaKnown RBP17.24■□□□□ 0.35
PTCH1-221ENST00000550914 C2CD5Q86YS7 1000 aa17.24■□□□□ 0.35
PTCH1-221ENST00000550914 RSPH6AQ9H0K4 717 aa17.24■□□□□ 0.35
PTCH1-221ENST00000550914 CARMIL3Q8ND23 1372 aa17.24■□□□□ 0.35
PTCH1-221ENST00000550914 BCORQ6W2J9 1755 aa17.23■□□□□ 0.35
PTCH1-221ENST00000550914 BRIP1Q9BX63 1249 aa17.23■□□□□ 0.35
PTCH1-221ENST00000550914 NUDCQ9Y266 331 aa17.23■□□□□ 0.35
PTCH1-221ENST00000550914 TIAM2Q8IVF5 1701 aa17.23■□□□□ 0.35
PTCH1-221ENST00000550914 PCNTO95613 3336 aa17.23■□□□□ 0.35
PTCH1-221ENST00000550914 PRKAR2BP31323 418 aa17.22■□□□□ 0.35
PTCH1-221ENST00000550914 PDE6BP35913 854 aa17.22■□□□□ 0.35
PTCH1-221ENST00000550914 RASSF7Q02833 373 aa17.22■□□□□ 0.35
PTCH1-221ENST00000550914 TBC1D9BQ66K14 1250 aa17.22■□□□□ 0.35
PTCH1-221ENST00000550914 BICDL1Q6ZP65 573 aa17.22■□□□□ 0.35
PTCH1-221ENST00000550914 NPM2Q86SE8 214 aaKnown RBP17.22■□□□□ 0.35
PTCH1-221ENST00000550914 PHACTR3Q96KR7 559 aa17.22■□□□□ 0.35
PTCH1-221ENST00000550914 RRAGCQ9HB90 399 aa17.22■□□□□ 0.35
PTCH1-221ENST00000550914 FER1L6Q2WGJ9 1857 aa17.22■□□□□ 0.35
PTCH1-221ENST00000550914 BTBD11A6QL63 1104 aa17.21■□□□□ 0.35
PTCH1-221ENST00000550914 CNGB1Q14028 1251 aaPredicted RBP17.21■□□□□ 0.35
PTCH1-221ENST00000550914 COL11A2P13942 1736 aaPredicted RBP17.21■□□□□ 0.35
PTCH1-221ENST00000550914 GLTPD2A6NH11 291 aa17.2■□□□□ 0.34
PTCH1-221ENST00000550914 CAMTA2O94983 1202 aa17.2■□□□□ 0.34
PTCH1-221ENST00000550914 PRR5LQ6MZQ0 368 aa17.2■□□□□ 0.34
PTCH1-221ENST00000550914 TBC1D2BQ9UPU7 963 aa17.2■□□□□ 0.34
PTCH1-221ENST00000550914 ARFGEF2Q9Y6D5 1785 aa17.2■□□□□ 0.34
PTCH1-221ENST00000550914 NFKBIEO00221 500 aa17.19■□□□□ 0.34
PTCH1-221ENST00000550914 A1BGP04217 495 aa17.19■□□□□ 0.34
PTCH1-221ENST00000550914 SMC1BQ8NDV3 1235 aa17.19■□□□□ 0.34
PTCH1-221ENST00000550914 SETDB2Q96T68 719 aa17.19■□□□□ 0.34
PTCH1-221ENST00000550914 ZNF330Q9Y3S2 320 aaPredicted RBP17.19■□□□□ 0.34
PTCH1-221ENST00000550914 VEGFAP15692 232 aaPredicted RBP17.18■□□□□ 0.34
PTCH1-221ENST00000550914 PRELPP51888 382 aa17.18■□□□□ 0.34
PTCH1-221ENST00000550914 RGL2O15211 777 aa17.17■□□□□ 0.34
PTCH1-221ENST00000550914 KCNQ3O43525 872 aa17.17■□□□□ 0.34
PTCH1-221ENST00000550914 HTATSF1O43719 755 aaKnown RBP17.17■□□□□ 0.34
PTCH1-221ENST00000550914 U2AF1L5P0DN76 240 aaPredicted RBP17.17■□□□□ 0.34
PTCH1-221ENST00000550914 U2AF1Q01081 240 aaKnown RBP eCLIP17.17■□□□□ 0.34
PTCH1-221ENST00000550914 CACNA1SQ13698 1873 aa17.17■□□□□ 0.34
PTCH1-221ENST00000550914 CLEC4GQ6UXB4 293 aa17.17■□□□□ 0.34
PTCH1-221ENST00000550914 DZIP3Q86Y13 1208 aaKnown RBP17.17■□□□□ 0.34
PTCH1-221ENST00000550914 CNBD1Q8NA66 436 aa17.17■□□□□ 0.34
PTCH1-221ENST00000550914 RTF1Q92541 710 aaKnown RBP17.17■□□□□ 0.34
PTCH1-221ENST00000550914 ZNF622Q969S3 477 aaKnown RBP eCLIP17.17■□□□□ 0.34
PTCH1-221ENST00000550914 LTBP3Q9NS15 1303 aa17.17■□□□□ 0.34
PTCH1-221ENST00000550914 SLX4Q8IY92 1834 aa17.17■□□□□ 0.34
PTCH1-221ENST00000550914 SNRPA1P09661 255 aaKnown RBP17.16■□□□□ 0.34
PTCH1-221ENST00000550914 PPP2R1AP30153 589 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms