RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 LY75O60449 1722 aa10.61□□□□□ -0.71
NEK3-201ENST00000550331 RAPGEF4Q8WZA2 1011 aa10.61□□□□□ -0.71
NEK3-201ENST00000550331 GPBP1L1Q9HC44 474 aaPredicted RBP10.61□□□□□ -0.71
NEK3-201ENST00000550331 DOT1LQ8TEK3 1739 aa10.61□□□□□ -0.71
NEK3-201ENST00000550331 TK2O00142 265 aa10.6□□□□□ -0.71
NEK3-201ENST00000550331 KCNQ4P56696 695 aa10.6□□□□□ -0.71
NEK3-201ENST00000550331 PCDH11XQ9BZA7 1347 aa10.59□□□□□ -0.71
NEK3-201ENST00000550331 PCDH11YQ9BZA8 1340 aa10.59□□□□□ -0.71
NEK3-201ENST00000550331 CLSPNQ9HAW4 1339 aa10.59□□□□□ -0.71
NEK3-201ENST00000550331 ARHGAP33O14559 1287 aa10.59□□□□□ -0.71
NEK3-201ENST00000550331 NUDT7P0C024 238 aa10.59□□□□□ -0.71
NEK3-201ENST00000550331 HSPA6P17066 643 aa10.59□□□□□ -0.71
NEK3-201ENST00000550331 TATP17735 454 aaPredicted RBP10.59□□□□□ -0.71
NEK3-201ENST00000550331 HSP90AB2PQ58FF8 381 aa10.59□□□□□ -0.71
NEK3-201ENST00000550331 CCNL1Q9UK58 526 aaPredicted RBP10.59□□□□□ -0.71
NEK3-201ENST00000550331 NSD3Q9BZ95 1437 aa10.58□□□□□ -0.72
NEK3-201ENST00000550331 HRO43593 1189 aa10.58□□□□□ -0.72
NEK3-201ENST00000550331 HMGB2P26583 209 aaKnown RBP10.58□□□□□ -0.72
NEK3-201ENST00000550331 USHBP1Q8N6Y0 703 aa10.58□□□□□ -0.72
NEK3-201ENST00000550331 ZNF526Q8TF50 670 aaPredicted RBP10.58□□□□□ -0.72
NEK3-201ENST00000550331 CARD14Q9BXL6 1004 aa10.58□□□□□ -0.72
NEK3-201ENST00000550331 LHX6Q9UPM6 363 aa10.58□□□□□ -0.72
NEK3-201ENST00000550331 KIF20BQ96Q89 1820 aa10.58□□□□□ -0.72
NEK3-201ENST00000550331 NCAPD2Q15021 1401 aa10.58□□□□□ -0.72
NEK3-201ENST00000550331 MSL1Q68DK7 614 aa10.56□□□□□ -0.72
NEK3-201ENST00000550331 KCTD12Q96CX2 325 aaKnown RBP10.56□□□□□ -0.72
NEK3-201ENST00000550331 EMILIN1Q9Y6C2 1016 aa10.56□□□□□ -0.72
NEK3-201ENST00000550331 C5P01031 1676 aa10.56□□□□□ -0.72
NEK3-201ENST00000550331 ADCY9O60503 1353 aa10.55□□□□□ -0.72
NEK3-201ENST00000550331 RGPD2P0DJD1 1756 aa10.55□□□□□ -0.72
NEK3-201ENST00000550331 CYP27B1O15528 508 aa10.55□□□□□ -0.72
NEK3-201ENST00000550331 COL23A1Q86Y22 540 aaPredicted RBP10.55□□□□□ -0.72
NEK3-201ENST00000550331 ANKRD26Q9UPS8 1709 aa10.55□□□□□ -0.72
NEK3-201ENST00000550331 WASHC2AQ641Q2 1341 aa10.55□□□□□ -0.72
NEK3-201ENST00000550331 PALLDQ8WX93 1383 aa10.54□□□□□ -0.72
NEK3-201ENST00000550331 TAF1LQ8IZX4 1826 aa10.54□□□□□ -0.72
NEK3-201ENST00000550331 CD2APQ9Y5K6 639 aa10.54□□□□□ -0.72
NEK3-201ENST00000550331 PLEKHG2Q9H7P9 1386 aa10.53□□□□□ -0.72
NEK3-201ENST00000550331 PKD1L3Q7Z443 1732 aa10.53□□□□□ -0.72
NEK3-201ENST00000550331 NKX1-1Q15270 411 aaPredicted RBP10.53□□□□□ -0.72
NEK3-201ENST00000550331 MPRIPQ6WCQ1 1025 aa10.53□□□□□ -0.72
NEK3-201ENST00000550331 SMARCC1Q92922 1105 aaPredicted RBP10.53□□□□□ -0.72
NEK3-201ENST00000550331 MS4A4AQ96JQ5 239 aa10.53□□□□□ -0.72
NEK3-201ENST00000550331 SPG7Q9UQ90 795 aa10.53□□□□□ -0.72
NEK3-201ENST00000550331 PPM1GO15355 546 aaPredicted RBP10.52□□□□□ -0.73
NEK3-201ENST00000550331 FLAD1Q8NFF5 587 aa10.52□□□□□ -0.73
NEK3-201ENST00000550331 POLKQ9UBT6 870 aa10.51□□□□□ -0.73
NEK3-201ENST00000550331 WWC3Q9ULE0 1092 aa10.51□□□□□ -0.73
NEK3-201ENST00000550331 TOGARAM1Q9Y4F4 1720 aa10.5□□□□□ -0.73
NEK3-201ENST00000550331 VASPP50552 380 aaPredicted RBP10.5□□□□□ -0.73
NEK3-201ENST00000550331 EYA1Q99502 592 aa10.5□□□□□ -0.73
NEK3-201ENST00000550331 KIF3CO14782 793 aa10.49□□□□□ -0.73
NEK3-201ENST00000550331 APLP1P51693 650 aa10.49□□□□□ -0.73
NEK3-201ENST00000550331 EIF4G2P78344 907 aaKnown RBP eCLIP10.49□□□□□ -0.73
NEK3-201ENST00000550331 FKBP8Q14318 412 aa10.49□□□□□ -0.73
NEK3-201ENST00000550331 IFNL2Q8IZJ0 200 aa10.49□□□□□ -0.73
NEK3-201ENST00000550331 PIGBQ92521 554 aa10.49□□□□□ -0.73
NEK3-201ENST00000550331 AK7Q96M32 723 aa10.49□□□□□ -0.73
NEK3-201ENST00000550331 PCGF6Q9BYE7 350 aa10.49□□□□□ -0.73
NEK3-201ENST00000550331 IGSF1Q8N6C5 1336 aa10.49□□□□□ -0.73
NEK3-201ENST00000550331 C4BP0C0L5 1744 aa10.49□□□□□ -0.73
NEK3-201ENST00000550331 UBR3Q6ZT12 1888 aa10.49□□□□□ -0.73
NEK3-201ENST00000550331 LOC102724428A0A0B4J2F2 783 aa10.48□□□□□ -0.73
NEK3-201ENST00000550331 PHKG2P15735 406 aa10.48□□□□□ -0.73
NEK3-201ENST00000550331 SIK1P57059 783 aa10.48□□□□□ -0.73
NEK3-201ENST00000550331 EIF4A2Q14240 407 aaKnown RBP10.48□□□□□ -0.73
NEK3-201ENST00000550331 Q6ZNB5 142 aa10.48□□□□□ -0.73
NEK3-201ENST00000550331 POLR3GLQ9BT43 218 aa10.48□□□□□ -0.73
NEK3-201ENST00000550331 TMOD3Q9NYL9 352 aa10.48□□□□□ -0.73
NEK3-201ENST00000550331 ITGB4P16144 1822 aa10.48□□□□□ -0.73
NEK3-201ENST00000550331 SLC34A2O95436 690 aa10.47□□□□□ -0.73
NEK3-201ENST00000550331 SSFA2P28290 1259 aa10.47□□□□□ -0.73
NEK3-201ENST00000550331 CIZ1Q9ULV3 898 aaPredicted RBP10.47□□□□□ -0.73
NEK3-201ENST00000550331 PCDHGA4Q9Y5G9 962 aa10.47□□□□□ -0.73
NEK3-201ENST00000550331 WDR90Q96KV7 1748 aa10.47□□□□□ -0.73
NEK3-201ENST00000550331 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.46□□□□□ -0.73
NEK3-201ENST00000550331 HSPA5P11021 654 aaKnown RBP10.46□□□□□ -0.73
NEK3-201ENST00000550331 TNNT2P45379 298 aaPredicted RBP10.46□□□□□ -0.73
NEK3-201ENST00000550331 PANK3Q9H999 370 aa10.46□□□□□ -0.73
NEK3-201ENST00000550331 CICQ96RK0 1608 aaPredicted RBP10.46□□□□□ -0.74
NEK3-201ENST00000550331 N4BP2Q86UW6 1770 aaPredicted RBP10.45□□□□□ -0.74
NEK3-201ENST00000550331 KDRP35968 1356 aa10.45□□□□□ -0.74
NEK3-201ENST00000550331 PHF14O94880 888 aa10.45□□□□□ -0.74
NEK3-201ENST00000550331 HSP90AB1P08238 724 aaKnown RBP10.45□□□□□ -0.74
NEK3-201ENST00000550331 AMIGO3Q86WK7 504 aa10.45□□□□□ -0.74
NEK3-201ENST00000550331 DNAJC5GQ8N7S2 189 aa10.45□□□□□ -0.74
NEK3-201ENST00000550331 LINC00116Q8NCU8 138 aa10.45□□□□□ -0.74
NEK3-201ENST00000550331 ASAP1Q9ULH1 1129 aa10.45□□□□□ -0.74
NEK3-201ENST00000550331 ERVV-2B6SEH9 535 aa10.44□□□□□ -0.74
NEK3-201ENST00000550331 TOMM70O94826 608 aa10.44□□□□□ -0.74
NEK3-201ENST00000550331 ATP6V1AP38606 617 aa10.44□□□□□ -0.74
NEK3-201ENST00000550331 ITPK1Q13572 414 aa10.44□□□□□ -0.74
NEK3-201ENST00000550331 DMRTA1Q5VZB9 504 aa10.44□□□□□ -0.74
NEK3-201ENST00000550331 DCAF5Q96JK2 942 aa10.44□□□□□ -0.74
NEK3-201ENST00000550331 ATG3Q9NT62 314 aa10.44□□□□□ -0.74
NEK3-201ENST00000550331 MAP2P11137 1827 aaKnown RBP10.44□□□□□ -0.74
NEK3-201ENST00000550331 KIF13BQ9NQT8 1826 aa10.43□□□□□ -0.74
NEK3-201ENST00000550331 GNPATO15228 680 aa10.43□□□□□ -0.74
NEK3-201ENST00000550331 AMOTQ4VCS5 1084 aa10.43□□□□□ -0.74
NEK3-201ENST00000550331 PLEKHO1Q53GL0 409 aaPredicted RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms