RNA–Protein interactions for RNA: ENST00000550102.5

CHMP1A-208, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 5 BASIC

Gene CHMP1A, Length 803 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-208ENST00000550102 NLGN1Q8N2Q7 840 aa22.74■■□□□ 1.23
CHMP1A-208ENST00000550102 KCNQ3O43525 872 aa22.73■■□□□ 1.23
CHMP1A-208ENST00000550102 MMP10P09238 476 aa22.73■■□□□ 1.23
CHMP1A-208ENST00000550102 GYS1P13807 737 aa22.73■■□□□ 1.23
CHMP1A-208ENST00000550102 TAF7Q15545 349 aaPredicted RBP22.73■■□□□ 1.23
CHMP1A-208ENST00000550102 BCORQ6W2J9 1755 aa22.73■■□□□ 1.23
CHMP1A-208ENST00000550102 CHD4Q14839 1912 aa22.72■■□□□ 1.23
CHMP1A-208ENST00000550102 LMOD3Q0VAK6 560 aa22.72■■□□□ 1.23
CHMP1A-208ENST00000550102 CCDC146Q8IYE0 955 aa22.71■■□□□ 1.23
CHMP1A-208ENST00000550102 NLGN2Q8NFZ4 835 aa22.71■■□□□ 1.23
CHMP1A-208ENST00000550102 PNISRQ8TF01 805 aaKnown RBP22.71■■□□□ 1.23
CHMP1A-208ENST00000550102 THUMPD2Q9BTF0 503 aaKnown RBP22.71■■□□□ 1.23
CHMP1A-208ENST00000550102 SRP68Q9UHB9 627 aaKnown RBP22.71■■□□□ 1.23
CHMP1A-208ENST00000550102 CD2APQ9Y5K6 639 aa22.71■■□□□ 1.23
CHMP1A-208ENST00000550102 KIAA1551Q9HCM1 1747 aa22.71■■□□□ 1.23
CHMP1A-208ENST00000550102 CANXP27824 592 aaKnown RBP22.7■■□□□ 1.22
CHMP1A-208ENST00000550102 TMPOP42166 694 aaKnown RBP22.7■■□□□ 1.22
CHMP1A-208ENST00000550102 RIPK4P57078 832 aa22.7■■□□□ 1.22
CHMP1A-208ENST00000550102 RUNDC1Q96C34 613 aa22.7■■□□□ 1.22
CHMP1A-208ENST00000550102 ZPR1O75312 459 aa22.69■■□□□ 1.22
CHMP1A-208ENST00000550102 ADAMTS8Q9UP79 889 aa22.69■■□□□ 1.22
CHMP1A-208ENST00000550102 AFDNP55196 1824 aaKnown RBP22.68■■□□□ 1.22
CHMP1A-208ENST00000550102 C10orf71Q711Q0 1435 aa22.68■■□□□ 1.22
CHMP1A-208ENST00000550102 SNRPA1P09661 255 aaKnown RBP22.68■■□□□ 1.22
CHMP1A-208ENST00000550102 N4BP2Q86UW6 1770 aaPredicted RBP22.67■■□□□ 1.22
CHMP1A-208ENST00000550102 NRXN2Q9P2S2 1712 aa22.66■■□□□ 1.22
CHMP1A-208ENST00000550102 ANP32CO43423 234 aa22.66■■□□□ 1.22
CHMP1A-208ENST00000550102 EIF5P55010 431 aaKnown RBP22.66■■□□□ 1.22
CHMP1A-208ENST00000550102 FKBP8Q14318 412 aa22.66■■□□□ 1.22
CHMP1A-208ENST00000550102 MIS18AQ9NYP9 233 aa22.66■■□□□ 1.22
CHMP1A-208ENST00000550102 NARFQ9UHQ1 456 aa22.66■■□□□ 1.22
CHMP1A-208ENST00000550102 RRP7AQ9Y3A4 280 aaKnown RBP22.66■■□□□ 1.22
CHMP1A-208ENST00000550102 PARP3Q9Y6F1 533 aa22.66■■□□□ 1.22
CHMP1A-208ENST00000550102 A0A087WZG4 1122 aa22.65■■□□□ 1.22
CHMP1A-208ENST00000550102 USPL1Q5W0Q7 1092 aa22.65■■□□□ 1.22
CHMP1A-208ENST00000550102 BRCA1P38398 1863 aaKnown RBP22.64■■□□□ 1.22
CHMP1A-208ENST00000550102 IL6STP40189 918 aaPredicted RBP22.64■■□□□ 1.21
CHMP1A-208ENST00000550102 ZNF330Q9Y3S2 320 aaPredicted RBP22.64■■□□□ 1.21
CHMP1A-208ENST00000550102 PRAMEF22A3QJZ6 481 aa22.63■■□□□ 1.21
CHMP1A-208ENST00000550102 A1BGP04217 495 aa22.63■■□□□ 1.21
CHMP1A-208ENST00000550102 NEUROD2Q15784 382 aa22.63■■□□□ 1.21
CHMP1A-208ENST00000550102 GPR162Q16538 588 aa22.63■■□□□ 1.21
CHMP1A-208ENST00000550102 NPM2Q86SE8 214 aaKnown RBP22.63■■□□□ 1.21
CHMP1A-208ENST00000550102 GOLGB1Q14789 3259 aaKnown RBP22.63■■□□□ 1.21
CHMP1A-208ENST00000550102 PXDNLA1KZ92 1463 aa22.62■■□□□ 1.21
CHMP1A-208ENST00000550102 PELP1Q8IZL8 1130 aaKnown RBP22.62■■□□□ 1.21
CHMP1A-208ENST00000550102 TSPYL4Q9UJ04 414 aa22.62■■□□□ 1.21
CHMP1A-208ENST00000550102 USP16Q9Y5T5 823 aa22.62■■□□□ 1.21
CHMP1A-208ENST00000550102 DDR1Q08345 913 aa22.61■■□□□ 1.21
CHMP1A-208ENST00000550102 YY1P25490 414 aa22.6■■□□□ 1.21
CHMP1A-208ENST00000550102 EIF4A1P60842 406 aaKnown RBP22.6■■□□□ 1.21
CHMP1A-208ENST00000550102 BABAM1Q9NWV8 329 aa22.6■■□□□ 1.21
CHMP1A-208ENST00000550102 DLEC1Q9Y238 1755 aa22.58■■□□□ 1.21
CHMP1A-208ENST00000550102 POLRMTO00411 1230 aaKnown RBP22.58■■□□□ 1.21
CHMP1A-208ENST00000550102 GIGYF1O75420 1035 aaPredicted RBP22.58■■□□□ 1.21
CHMP1A-208ENST00000550102 CCDC184Q52MB2 194 aa22.58■■□□□ 1.21
CHMP1A-208ENST00000550102 BCL2L12Q9HB09 334 aa22.58■■□□□ 1.21
CHMP1A-208ENST00000550102 TRIM35Q9UPQ4 493 aa22.58■■□□□ 1.21
CHMP1A-208ENST00000550102 TM4SF1P30408 202 aa22.57■■□□□ 1.2
CHMP1A-208ENST00000550102 PIP4K2AP48426 406 aaPredicted RBP22.57■■□□□ 1.2
CHMP1A-208ENST00000550102 NFIXQ14938 502 aa22.57■■□□□ 1.2
CHMP1A-208ENST00000550102 MRS2Q9HD23 443 aa22.57■■□□□ 1.2
CHMP1A-208ENST00000550102 YBX3P16989 372 aaKnown RBP eCLIP22.56■■□□□ 1.26e-9■■□□□ 14.5
CHMP1A-208ENST00000550102 DZIP3Q86Y13 1208 aaKnown RBP22.56■■□□□ 1.2
CHMP1A-208ENST00000550102 TBC1D2BQ9UPU7 963 aa22.56■■□□□ 1.2
CHMP1A-208ENST00000550102 ARFGEF1Q9Y6D6 1849 aa22.56■■□□□ 1.2
CHMP1A-208ENST00000550102 UTRNP46939 3433 aa22.56■■□□□ 1.2
CHMP1A-208ENST00000550102 APAF1O14727 1248 aa22.55■■□□□ 1.2
CHMP1A-208ENST00000550102 ANKRD31Q8N7Z5 1873 aa22.55■■□□□ 1.2
CHMP1A-208ENST00000550102 NBPF26B4DH59 902 aa22.54■■□□□ 1.2
CHMP1A-208ENST00000550102 CAMTA2O94983 1202 aa22.54■■□□□ 1.2
CHMP1A-208ENST00000550102 TGFB2P61812 414 aa22.54■■□□□ 1.2
CHMP1A-208ENST00000550102 NBPF10Q6P3W6 841 aaKnown RBP22.54■■□□□ 1.2
CHMP1A-208ENST00000550102 NBPF15Q8N660 670 aa22.54■■□□□ 1.2
CHMP1A-208ENST00000550102 NUP98P52948 1817 aa22.54■■□□□ 1.2
CHMP1A-208ENST00000550102 CARMIL3Q8ND23 1372 aa22.53■■□□□ 1.2
CHMP1A-208ENST00000550102 GRIN3BO60391 1043 aa22.53■■□□□ 1.2
CHMP1A-208ENST00000550102 ERBB4Q15303 1308 aa22.52■■□□□ 1.2
CHMP1A-208ENST00000550102 CHL1O00533 1208 aa22.51■■□□□ 1.19
CHMP1A-208ENST00000550102 TBC1D9BQ66K14 1250 aa22.51■■□□□ 1.19
CHMP1A-208ENST00000550102 BICDL1Q6ZP65 573 aa22.51■■□□□ 1.19
CHMP1A-208ENST00000550102 ZNF652Q9Y2D9 606 aa22.51■■□□□ 1.19
CHMP1A-208ENST00000550102 LAS1LQ9Y4W2 734 aaKnown RBP22.51■■□□□ 1.19
CHMP1A-208ENST00000550102 CALD1Q05682 793 aaKnown RBP22.5■■□□□ 1.19
CHMP1A-208ENST00000550102 WWC3Q9ULE0 1092 aa22.5■■□□□ 1.19
CHMP1A-208ENST00000550102 COL11A2P13942 1736 aaPredicted RBP22.5■■□□□ 1.19
CHMP1A-208ENST00000550102 A0A0G2JLW4 131 aa22.49■■□□□ 1.19
CHMP1A-208ENST00000550102 RGL2O15211 777 aa22.49■■□□□ 1.19
CHMP1A-208ENST00000550102 SERPINB2P05120 415 aa22.49■■□□□ 1.19
CHMP1A-208ENST00000550102 DPEP1P16444 411 aa22.48■■□□□ 1.19
CHMP1A-208ENST00000550102 ANKRD36CQ5JPF3 1778 aa22.48■■□□□ 1.19
CHMP1A-208ENST00000550102 CLEC4GQ6UXB4 293 aa22.47■■□□□ 1.19
CHMP1A-208ENST00000550102 CFAP44Q96MT7 982 aa22.47■■□□□ 1.19
CHMP1A-208ENST00000550102 SETDB2Q96T68 719 aa22.47■■□□□ 1.19
CHMP1A-208ENST00000550102 MYL6BP14649 208 aa22.46■■□□□ 1.19
CHMP1A-208ENST00000550102 KIF6Q6ZMV9 814 aa22.45■■□□□ 1.18
CHMP1A-208ENST00000550102 IFT57Q9NWB7 429 aa22.45■■□□□ 1.18
CHMP1A-208ENST00000550102 CACNA1SQ13698 1873 aa22.45■■□□□ 1.18
CHMP1A-208ENST00000550102 EIF2S2P20042 333 aaKnown RBP22.44■■□□□ 1.18
CHMP1A-208ENST00000550102 NGEFQ8N5V2 710 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms