RNA–Protein interactions for RNA: ENST00000549678.1

PTCH1-219, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 578 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-219ENST00000549678 RIPK4P57078 832 aa9.56□□□□□ -0.88
PTCH1-219ENST00000549678 IL17REQ8NFR9 667 aa9.56□□□□□ -0.88
PTCH1-219ENST00000549678 RUNDC1Q96C34 613 aa9.56□□□□□ -0.88
PTCH1-219ENST00000549678 PARP3Q9Y6F1 533 aa9.56□□□□□ -0.88
PTCH1-219ENST00000549678 C10orf71Q711Q0 1435 aa9.56□□□□□ -0.88
PTCH1-219ENST00000549678 KIF13BQ9NQT8 1826 aa9.55□□□□□ -0.88
PTCH1-219ENST00000549678 GIGYF1O75420 1035 aaPredicted RBP9.55□□□□□ -0.88
PTCH1-219ENST00000549678 C1QTNF8P60827 252 aa9.55□□□□□ -0.88
PTCH1-219ENST00000549678 ZNF790Q6PG37 636 aa9.55□□□□□ -0.88
PTCH1-219ENST00000549678 DNAJC10Q8IXB1 793 aa9.55□□□□□ -0.88
PTCH1-219ENST00000549678 FMNL2Q96PY5 1086 aa9.55□□□□□ -0.88
PTCH1-219ENST00000549678 PLEKHF1Q96S99 279 aa9.55□□□□□ -0.88
PTCH1-219ENST00000549678 RRP7AQ9Y3A4 280 aaKnown RBP9.55□□□□□ -0.88
PTCH1-219ENST00000549678 ZNF330Q9Y3S2 320 aaPredicted RBP9.55□□□□□ -0.88
PTCH1-219ENST00000549678 KCPQ6ZWJ8 1503 aa9.55□□□□□ -0.88
PTCH1-219ENST00000549678 USP42Q9H9J4 1324 aaKnown RBP9.55□□□□□ -0.88
PTCH1-219ENST00000549678 CEMIPQ8WUJ3 1361 aa9.54□□□□□ -0.88
PTCH1-219ENST00000549678 STARD3NLO95772 234 aa9.54□□□□□ -0.88
PTCH1-219ENST00000549678 INTS5Q6P9B9 1019 aaKnown RBP9.54□□□□□ -0.88
PTCH1-219ENST00000549678 PNISRQ8TF01 805 aaKnown RBP9.54□□□□□ -0.88
PTCH1-219ENST00000549678 ADAMTS8Q9UP79 889 aa9.54□□□□□ -0.88
PTCH1-219ENST00000549678 C4AP0C0L4 1744 aa9.53□□□□□ -0.88
PTCH1-219ENST00000549678 PXDNLA1KZ92 1463 aa9.53□□□□□ -0.88
PTCH1-219ENST00000549678 ADCY9O60503 1353 aa9.53□□□□□ -0.88
PTCH1-219ENST00000549678 HEG1Q9ULI3 1381 aa9.53□□□□□ -0.88
PTCH1-219ENST00000549678 ZPR1O75312 459 aa9.53□□□□□ -0.88
PTCH1-219ENST00000549678 TMPOP42166 694 aaKnown RBP9.53□□□□□ -0.88
PTCH1-219ENST00000549678 TAF7Q15545 349 aaPredicted RBP9.53□□□□□ -0.88
PTCH1-219ENST00000549678 TEX13AQ9BXU3 409 aaPredicted RBP9.53□□□□□ -0.88
PTCH1-219ENST00000549678 LAS1LQ9Y4W2 734 aaKnown RBP9.53□□□□□ -0.88
PTCH1-219ENST00000549678 SOS1Q07889 1333 aaPredicted RBP9.53□□□□□ -0.88
PTCH1-219ENST00000549678 LAMB4A4D0S4 1761 aa9.52□□□□□ -0.88
PTCH1-219ENST00000549678 KDM3BQ7LBC6 1761 aa9.52□□□□□ -0.88
PTCH1-219ENST00000549678 CYP19A1P11511 503 aaPredicted RBP9.52□□□□□ -0.89
PTCH1-219ENST00000549678 CANXP27824 592 aaKnown RBP9.52□□□□□ -0.89
PTCH1-219ENST00000549678 ZNF496Q96IT1 587 aaPredicted RBP9.52□□□□□ -0.89
PTCH1-219ENST00000549678 THUMPD2Q9BTF0 503 aaKnown RBP9.52□□□□□ -0.89
PTCH1-219ENST00000549678 ATP10DQ9P241 1426 aa9.52□□□□□ -0.89
PTCH1-219ENST00000549678 NARFQ9UHQ1 456 aa9.52□□□□□ -0.89
PTCH1-219ENST00000549678 TSPYL4Q9UJ04 414 aa9.52□□□□□ -0.89
PTCH1-219ENST00000549678 A0A087WZG4 1122 aa9.51□□□□□ -0.89
PTCH1-219ENST00000549678 FKBP8Q14318 412 aa9.51□□□□□ -0.89
PTCH1-219ENST00000549678 GPBP1L1Q9HC44 474 aaPredicted RBP9.51□□□□□ -0.89
PTCH1-219ENST00000549678 MIS18AQ9NYP9 233 aa9.51□□□□□ -0.89
PTCH1-219ENST00000549678 COL15A1P39059 1388 aa9.5□□□□□ -0.89
PTCH1-219ENST00000549678 KCNQ3O43525 872 aa9.5□□□□□ -0.89
PTCH1-219ENST00000549678 DPEP1P16444 411 aa9.5□□□□□ -0.89
PTCH1-219ENST00000549678 TM4SF1P30408 202 aa9.5□□□□□ -0.89
PTCH1-219ENST00000549678 FAM9BQ8IZU0 186 aa9.5□□□□□ -0.89
PTCH1-219ENST00000549678 PIM2Q9P1W9 311 aa9.5□□□□□ -0.89
PTCH1-219ENST00000549678 SRP68Q9UHB9 627 aaKnown RBP9.5□□□□□ -0.89
PTCH1-219ENST00000549678 BCS1LQ9Y276 419 aa9.5□□□□□ -0.89
PTCH1-219ENST00000549678 ZBTB1Q9Y2K1 713 aa9.5□□□□□ -0.89
PTCH1-219ENST00000549678 KIAA1551Q9HCM1 1747 aa9.49□□□□□ -0.89
PTCH1-219ENST00000549678 SENP3-EIF4A1A0A087X0R7 540 aa9.49□□□□□ -0.89
PTCH1-219ENST00000549678 A0A0G2JLW4 131 aa9.49□□□□□ -0.89
PTCH1-219ENST00000549678 POLRMTO00411 1230 aaKnown RBP9.49□□□□□ -0.89
PTCH1-219ENST00000549678 APAF1O14727 1248 aa9.49□□□□□ -0.89
PTCH1-219ENST00000549678 SNRPA1P09661 255 aaKnown RBP9.49□□□□□ -0.89
PTCH1-219ENST00000549678 EIF5P55010 431 aaKnown RBP9.49□□□□□ -0.89
PTCH1-219ENST00000549678 CALD1Q05682 793 aaKnown RBP9.49□□□□□ -0.89
PTCH1-219ENST00000549678 DDR1Q08345 913 aa9.49□□□□□ -0.89
PTCH1-219ENST00000549678 CCDC184Q52MB2 194 aa9.49□□□□□ -0.89
PTCH1-219ENST00000549678 DALRD3Q5D0E6 543 aaKnown RBP9.49□□□□□ -0.89
PTCH1-219ENST00000549678 USPL1Q5W0Q7 1092 aa9.49□□□□□ -0.89
PTCH1-219ENST00000549678 PDZRN3Q9UPQ7 1066 aa9.49□□□□□ -0.89
PTCH1-219ENST00000549678 NPHP1O15259 732 aa9.48□□□□□ -0.89
PTCH1-219ENST00000549678 IL6STP40189 918 aaPredicted RBP9.48□□□□□ -0.89
PTCH1-219ENST00000549678 BRCA1P38398 1863 aaKnown RBP9.48□□□□□ -0.89
PTCH1-219ENST00000549678 RGL2O15211 777 aa9.47□□□□□ -0.89
PTCH1-219ENST00000549678 KCNA3P22001 575 aa9.47□□□□□ -0.89
PTCH1-219ENST00000549678 NFIXQ14938 502 aa9.47□□□□□ -0.89
PTCH1-219ENST00000549678 ARHGAP27Q6ZUM4 889 aa9.47□□□□□ -0.89
PTCH1-219ENST00000549678 WWC3Q9ULE0 1092 aa9.47□□□□□ -0.89
PTCH1-219ENST00000549678 SALL2Q9Y467 1007 aaPredicted RBP9.47□□□□□ -0.89
PTCH1-219ENST00000549678 N4BP2Q86UW6 1770 aaPredicted RBP9.47□□□□□ -0.89
PTCH1-219ENST00000549678 ARFGEF1Q9Y6D6 1849 aa9.47□□□□□ -0.89
PTCH1-219ENST00000549678 SCN7AQ01118 1682 aa9.46□□□□□ -0.89
PTCH1-219ENST00000549678 PRAMEF22A3QJZ6 481 aa9.46□□□□□ -0.9
PTCH1-219ENST00000549678 A1BGP04217 495 aa9.46□□□□□ -0.9
PTCH1-219ENST00000549678 EIF2S2P20042 333 aaKnown RBP9.46□□□□□ -0.9
PTCH1-219ENST00000549678 PIP4K2AP48426 406 aaPredicted RBP9.46□□□□□ -0.9
PTCH1-219ENST00000549678 NGEFQ8N5V2 710 aa9.46□□□□□ -0.9
PTCH1-219ENST00000549678 USP16Q9Y5T5 823 aa9.46□□□□□ -0.9
PTCH1-219ENST00000549678 ZC3H4Q9UPT8 1303 aaKnown RBP9.46□□□□□ -0.9
PTCH1-219ENST00000549678 SERPINB2P05120 415 aa9.45□□□□□ -0.9
PTCH1-219ENST00000549678 MYL6BP14649 208 aa9.45□□□□□ -0.9
PTCH1-219ENST00000549678 EIF4A1P60842 406 aaKnown RBP9.45□□□□□ -0.9
PTCH1-219ENST00000549678 GNAI1P63096 354 aa9.45□□□□□ -0.9
PTCH1-219ENST00000549678 BICDL1Q6ZP65 573 aa9.45□□□□□ -0.9
PTCH1-219ENST00000549678 DZIP3Q86Y13 1208 aaKnown RBP9.45□□□□□ -0.9
PTCH1-219ENST00000549678 BCL2L12Q9HB09 334 aa9.45□□□□□ -0.9
PTCH1-219ENST00000549678 BABAM1Q9NWV8 329 aa9.45□□□□□ -0.9
PTCH1-219ENST00000549678 TRIM35Q9UPQ4 493 aa9.45□□□□□ -0.9
PTCH1-219ENST00000549678 TBC1D2BQ9UPU7 963 aa9.45□□□□□ -0.9
PTCH1-219ENST00000549678 NRXN2Q9P2S2 1712 aa9.45□□□□□ -0.9
PTCH1-219ENST00000549678 BCORQ6W2J9 1755 aa9.45□□□□□ -0.9
PTCH1-219ENST00000549678 DIEXFQ68CQ4 756 aaKnown RBP9.44□□□□□ -0.9
PTCH1-219ENST00000549678 KIF6Q6ZMV9 814 aa9.44□□□□□ -0.9
PTCH1-219ENST00000549678 NECTIN2Q92692 538 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms