RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 SPATA31C1P0DKV0 1188 aa8.32□□□□□ -1.08
VPS29-205ENST00000548539 PLA2G4AP47712 749 aa8.32□□□□□ -1.08
VPS29-205ENST00000548539 NLRP8Q86W28 1048 aa8.32□□□□□ -1.08
VPS29-205ENST00000548539 C1orf216Q8TAB5 229 aa8.32□□□□□ -1.08
VPS29-205ENST00000548539 DNAAF2Q9NVR5 837 aaKnown RBP8.32□□□□□ -1.08
VPS29-205ENST00000548539 USP4Q13107 963 aa8.31□□□□□ -1.08
VPS29-205ENST00000548539 AIDAQ96BJ3 306 aa8.31□□□□□ -1.08
VPS29-205ENST00000548539 ETNK1Q9HBU6 452 aa8.31□□□□□ -1.08
VPS29-205ENST00000548539 AVENQ9NQS1 362 aaPredicted RBP8.31□□□□□ -1.08
VPS29-205ENST00000548539 FAM182BQ5T319 152 aa8.3□□□□□ -1.08
VPS29-205ENST00000548539 FCHSD1Q86WN1 690 aa8.3□□□□□ -1.08
VPS29-205ENST00000548539 TRIM11Q96F44 468 aa8.3□□□□□ -1.08
VPS29-205ENST00000548539 KLF15Q9UIH9 416 aa8.3□□□□□ -1.08
VPS29-205ENST00000548539 DCDC2BA2VCK2 349 aa8.29□□□□□ -1.08
VPS29-205ENST00000548539 MAPTP10636 758 aaKnown RBP8.29□□□□□ -1.08
VPS29-205ENST00000548539 CD33P20138 364 aa8.29□□□□□ -1.08
VPS29-205ENST00000548539 NDUFB9Q9Y6M9 179 aa8.29□□□□□ -1.08
VPS29-205ENST00000548539 SPDYE3A6NKU9 549 aa8.28□□□□□ -1.08
VPS29-205ENST00000548539 KHNYNO15037 678 aaKnown RBP8.28□□□□□ -1.08
VPS29-205ENST00000548539 STAU1O95793 577 aaKnown RBP8.28□□□□□ -1.08
VPS29-205ENST00000548539 ATP4AP20648 1035 aa8.28□□□□□ -1.08
VPS29-205ENST00000548539 TNP2Q05952 138 aa8.28□□□□□ -1.08
VPS29-205ENST00000548539 RSPO4Q2I0M5 234 aaPredicted RBP8.28□□□□□ -1.08
VPS29-205ENST00000548539 ARSJQ5FYB0 599 aaPredicted RBP8.28□□□□□ -1.08
VPS29-205ENST00000548539 NIFKQ9BYG3 293 aaKnown RBP8.28□□□□□ -1.08
VPS29-205ENST00000548539 PRR12Q9ULL5 1215 aa8.28□□□□□ -1.08
VPS29-205ENST00000548539 A0A1W2PNR3 127 aa8.27□□□□□ -1.09
VPS29-205ENST00000548539 PCBP4P57723 403 aaKnown RBP8.27□□□□□ -1.09
VPS29-205ENST00000548539 DOLKQ9UPQ8 538 aa8.27□□□□□ -1.09
VPS29-205ENST00000548539 GPR37L1O60883 481 aa8.26□□□□□ -1.09
VPS29-205ENST00000548539 TSGA10IPQ3SY00 556 aa8.26□□□□□ -1.09
VPS29-205ENST00000548539 PRRT3Q5FWE3 981 aa8.26□□□□□ -1.09
VPS29-205ENST00000548539 NKAPLQ5M9Q1 402 aa8.26□□□□□ -1.09
VPS29-205ENST00000548539 APBA3O96018 575 aa8.25□□□□□ -1.09
VPS29-205ENST00000548539 ALAS2P22557 587 aa8.25□□□□□ -1.09
VPS29-205ENST00000548539 ZNF468Q5VIY5 522 aaPredicted RBP8.25□□□□□ -1.09
VPS29-205ENST00000548539 BANK1Q8NDB2 785 aa8.25□□□□□ -1.09
VPS29-205ENST00000548539 SIRT1Q96EB6 747 aa8.25□□□□□ -1.09
VPS29-205ENST00000548539 ZFP64Q9NPA5 681 aa8.25□□□□□ -1.09
VPS29-205ENST00000548539 TPSG1Q9NRR2 321 aa8.25□□□□□ -1.09
VPS29-205ENST00000548539 HCN2Q9UL51 889 aa8.25□□□□□ -1.09
VPS29-205ENST00000548539 APBB1O00213 710 aa8.24□□□□□ -1.09
VPS29-205ENST00000548539 NBPF1Q3BBV0 1214 aa8.24□□□□□ -1.09
VPS29-205ENST00000548539 FOXD4L6Q3SYB3 417 aaPredicted RBP8.24□□□□□ -1.09
VPS29-205ENST00000548539 FOXD4L3Q6VB84 417 aaPredicted RBP8.24□□□□□ -1.09
VPS29-205ENST00000548539 GJA3Q9Y6H8 435 aa8.24□□□□□ -1.09
VPS29-205ENST00000548539 SOCS7O14512 581 aa8.23□□□□□ -1.09
VPS29-205ENST00000548539 INHAP05111 366 aa8.23□□□□□ -1.09
VPS29-205ENST00000548539 TATP17735 454 aaPredicted RBP8.23□□□□□ -1.09
VPS29-205ENST00000548539 SLFNL1Q499Z3 407 aa8.23□□□□□ -1.09
VPS29-205ENST00000548539 ARTNQ5T4W7 220 aa8.23□□□□□ -1.09
VPS29-205ENST00000548539 MTMR14Q8NCE2 650 aa8.23□□□□□ -1.09
VPS29-205ENST00000548539 ELOA3CA0A087WX78 387 aaPredicted RBP8.22□□□□□ -1.09
VPS29-205ENST00000548539 ELOA3DA6NLF2 546 aaPredicted RBP8.22□□□□□ -1.09
VPS29-205ENST00000548539 DYRK3O43781 588 aa8.22□□□□□ -1.09
VPS29-205ENST00000548539 FAM157BP0CG42 384 aa8.22□□□□□ -1.09
VPS29-205ENST00000548539 ELOA3BQ3SY89 546 aa8.22□□□□□ -1.09
VPS29-205ENST00000548539 OXLD1Q5BKU9 147 aa8.22□□□□□ -1.09
VPS29-205ENST00000548539 NBPF11Q86T75 865 aa8.22□□□□□ -1.09
VPS29-205ENST00000548539 ELOA3Q8NG57 546 aa8.22□□□□□ -1.09
VPS29-205ENST00000548539 MARK1Q9P0L2 795 aa8.22□□□□□ -1.09
VPS29-205ENST00000548539 SCNN1DP51172 638 aa8.21□□□□□ -1.1
VPS29-205ENST00000548539 SMTNP53814 917 aa8.21□□□□□ -1.1
VPS29-205ENST00000548539 GDF10P55107 478 aa8.21□□□□□ -1.1
VPS29-205ENST00000548539 LCE3BQ5TA77 95 aa8.21□□□□□ -1.1
VPS29-205ENST00000548539 PHTF2Q8N3S3 785 aa8.21□□□□□ -1.1
VPS29-205ENST00000548539 EIF4G2P78344 907 aaKnown RBP eCLIP8.2□□□□□ -1.1
VPS29-205ENST00000548539 ZIC5Q96T25 663 aa8.2□□□□□ -1.1
VPS29-205ENST00000548539 SUPT5HO00267 1087 aaKnown RBP8.19□□□□□ -1.1
VPS29-205ENST00000548539 LAMC2Q13753 1193 aa8.19□□□□□ -1.1
VPS29-205ENST00000548539 PRSS36Q5K4E3 855 aa8.19□□□□□ -1.1
VPS29-205ENST00000548539 NACC1Q96RE7 527 aa8.19□□□□□ -1.1
VPS29-205ENST00000548539 ZDHHC3Q9NYG2 299 aa8.19□□□□□ -1.1
VPS29-205ENST00000548539 TRIM28Q13263 835 aaKnown RBP8.18□□□□□ -1.1
VPS29-205ENST00000548539 BICDL1Q6ZP65 573 aa8.18□□□□□ -1.1
VPS29-205ENST00000548539 SYT9Q86SS6 491 aa8.18□□□□□ -1.1
VPS29-205ENST00000548539 KRTAP4-12Q9BQ66 201 aa8.18□□□□□ -1.1
VPS29-205ENST00000548539 STRN4Q9NRL3 753 aa8.18□□□□□ -1.1
VPS29-205ENST00000548539 SAMD5Q5TGI4 173 aa8.17□□□□□ -1.1
VPS29-205ENST00000548539 SNRKQ9NRH2 765 aa8.17□□□□□ -1.1
VPS29-205ENST00000548539 CABP1Q9NZU7 370 aa8.17□□□□□ -1.1
VPS29-205ENST00000548539 SERTAD1Q9UHV2 236 aa8.17□□□□□ -1.1
VPS29-205ENST00000548539 FAM229AH3BQW9 127 aa8.16□□□□□ -1.1
VPS29-205ENST00000548539 M0R082 166 aa8.16□□□□□ -1.1
VPS29-205ENST00000548539 CDK2AP1O14519 115 aa8.16□□□□□ -1.1
VPS29-205ENST00000548539 EFSO43281 561 aa8.16□□□□□ -1.1
VPS29-205ENST00000548539 ZNF417Q8TAU3 575 aa8.16□□□□□ -1.1
VPS29-205ENST00000548539 ZNF587Q96SQ5 575 aaPredicted RBP8.16□□□□□ -1.1
VPS29-205ENST00000548539 ZNF295-AS1Q8N0V1 137 aa8.15□□□□□ -1.1
VPS29-205ENST00000548539 A6NJY4 79 aa8.14□□□□□ -1.11
VPS29-205ENST00000548539 SIN3BO75182 1162 aa8.14□□□□□ -1.11
VPS29-205ENST00000548539 GRIK4Q16099 956 aa8.14□□□□□ -1.11
VPS29-205ENST00000548539 SLC4A9Q96Q91 983 aa8.14□□□□□ -1.11
VPS29-205ENST00000548539 CHIC2Q9UKJ5 165 aa8.14□□□□□ -1.11
VPS29-205ENST00000548539 IQSEC3Q9UPP2 1182 aaPredicted RBP8.14□□□□□ -1.11
VPS29-205ENST00000548539 ADARB2-AS1A8MUL3 147 aa8.13□□□□□ -1.11
VPS29-205ENST00000548539 MTFR1Q15390 333 aa8.13□□□□□ -1.11
VPS29-205ENST00000548539 MAP7D1Q3KQU3 841 aa8.13□□□□□ -1.11
VPS29-205ENST00000548539 MDFIQ99750 246 aa8.13□□□□□ -1.11
VPS29-205ENST00000548539 PRM3Q9NNZ6 103 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms