RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 TTLL6Q8N841 843 aa19.69■□□□□ 0.74
PTCH1-217ENST00000548420 AFDNP55196 1824 aaKnown RBP19.69■□□□□ 0.74
PTCH1-217ENST00000548420 RTL1A6NKG5 1358 aa19.69■□□□□ 0.74
PTCH1-217ENST00000548420 ROCK2O75116 1388 aaKnown RBP19.69■□□□□ 0.74
PTCH1-217ENST00000548420 HSP90AB2PQ58FF8 381 aa19.68■□□□□ 0.74
PTCH1-217ENST00000548420 ADAMTSL1Q8N6G6 1762 aa19.67■□□□□ 0.74
PTCH1-217ENST00000548420 COG3Q96JB2 828 aa19.67■□□□□ 0.74
PTCH1-217ENST00000548420 RBM42Q9BTD8 480 aaKnown RBP19.67■□□□□ 0.74
PTCH1-217ENST00000548420 FER1L6Q2WGJ9 1857 aa19.67■□□□□ 0.74
PTCH1-217ENST00000548420 ADAMTS7Q9UKP4 1686 aa19.66■□□□□ 0.74
PTCH1-217ENST00000548420 SCN4AP35499 1836 aa19.65■□□□□ 0.74
PTCH1-217ENST00000548420 SOX10P56693 466 aa19.64■□□□□ 0.73
PTCH1-217ENST00000548420 DGKZQ13574 1117 aa19.64■□□□□ 0.73
PTCH1-217ENST00000548420 CAPNS2Q96L46 248 aa19.64■□□□□ 0.73
PTCH1-217ENST00000548420 TIMELESSQ9UNS1 1208 aa19.64■□□□□ 0.73
PTCH1-217ENST00000548420 NRXN2Q9P2S2 1712 aa19.64■□□□□ 0.73
PTCH1-217ENST00000548420 SMG6Q86US8 1419 aaKnown RBP19.63■□□□□ 0.73
PTCH1-217ENST00000548420 L3MBTL3Q96JM7 780 aaPredicted RBP19.63■□□□□ 0.73
PTCH1-217ENST00000548420 ABT1Q9ULW3 272 aaKnown RBP19.63■□□□□ 0.73
PTCH1-217ENST00000548420 FMR1Q06787 632 aaKnown RBP eCLIP19.62■□□□□ 0.732e-7■■■■■ 26.8
PTCH1-217ENST00000548420 EAPPQ56P03 285 aaPredicted RBP19.62■□□□□ 0.73
PTCH1-217ENST00000548420 MAP1SQ66K74 1059 aaPredicted RBP19.62■□□□□ 0.73
PTCH1-217ENST00000548420 CYP4F22Q6NT55 531 aa19.62■□□□□ 0.73
PTCH1-217ENST00000548420 C2CD5Q86YS7 1000 aa19.62■□□□□ 0.73
PTCH1-217ENST00000548420 CNTROBQ8N137 903 aa19.62■□□□□ 0.73
PTCH1-217ENST00000548420 GPR101Q96P66 508 aaPredicted RBP19.62■□□□□ 0.73
PTCH1-217ENST00000548420 BEGAINQ9BUH8 593 aa19.62■□□□□ 0.73
PTCH1-217ENST00000548420 ZNF219Q9P2Y4 722 aaPredicted RBP19.62■□□□□ 0.73
PTCH1-217ENST00000548420 INSRP06213 1382 aa19.61■□□□□ 0.73
PTCH1-217ENST00000548420 TERF2IPQ9NYB0 399 aa19.61■□□□□ 0.73
PTCH1-217ENST00000548420 CARMIL3Q8ND23 1372 aa19.6■□□□□ 0.73
PTCH1-217ENST00000548420 IQCA1LA6NCM1 817 aa19.6■□□□□ 0.73
PTCH1-217ENST00000548420 C21orf2O43822 256 aa19.6■□□□□ 0.73
PTCH1-217ENST00000548420 PHKG2P15735 406 aa19.6■□□□□ 0.73
PTCH1-217ENST00000548420 CRKLP46109 303 aaKnown RBP19.6■□□□□ 0.73
PTCH1-217ENST00000548420 CARD11Q9BXL7 1154 aa19.6■□□□□ 0.73
PTCH1-217ENST00000548420 NCAPD2Q15021 1401 aa19.59■□□□□ 0.73
PTCH1-217ENST00000548420 AOC2O75106 756 aa19.59■□□□□ 0.73
PTCH1-217ENST00000548420 GRM1Q13255 1194 aa19.59■□□□□ 0.73
PTCH1-217ENST00000548420 NFIXQ14938 502 aa19.59■□□□□ 0.73
PTCH1-217ENST00000548420 SPG7Q9UQ90 795 aa19.59■□□□□ 0.73
PTCH1-217ENST00000548420 CLEC11AQ9Y240 323 aa19.59■□□□□ 0.73
PTCH1-217ENST00000548420 USPL1Q5W0Q7 1092 aa19.58■□□□□ 0.72
PTCH1-217ENST00000548420 LTBP3Q9NS15 1303 aa19.56■□□□□ 0.72
PTCH1-217ENST00000548420 DDX21Q9NR30 783 aaKnown RBP eCLIP19.56■□□□□ 0.72
PTCH1-217ENST00000548420 H0YIN7 160 aa19.55■□□□□ 0.72
PTCH1-217ENST00000548420 INTS5Q6P9B9 1019 aaKnown RBP19.55■□□□□ 0.72
PTCH1-217ENST00000548420 PAXIP1Q6ZW49 1069 aaPredicted RBP19.55■□□□□ 0.72
PTCH1-217ENST00000548420 IFNL2Q8IZJ0 200 aa19.55■□□□□ 0.72
PTCH1-217ENST00000548420 SERPINB2P05120 415 aa19.54■□□□□ 0.72
PTCH1-217ENST00000548420 EPHX2P34913 555 aa19.54■□□□□ 0.72
PTCH1-217ENST00000548420 ECE1P42892 770 aa19.54■□□□□ 0.72
PTCH1-217ENST00000548420 TAOK3Q9H2K8 898 aa19.54■□□□□ 0.72
PTCH1-217ENST00000548420 ANKRD31Q8N7Z5 1873 aa19.54■□□□□ 0.72
PTCH1-217ENST00000548420 ZNF541Q9H0D2 1346 aa19.53■□□□□ 0.72
PTCH1-217ENST00000548420 BCL2L12Q9HB09 334 aa19.53■□□□□ 0.72
PTCH1-217ENST00000548420 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.53■□□□□ 0.72
PTCH1-217ENST00000548420 HACL1Q9UJ83 578 aa19.53■□□□□ 0.72
PTCH1-217ENST00000548420 TJP1Q07157 1748 aa19.52■□□□□ 0.72
PTCH1-217ENST00000548420 CST9Q5W186 159 aa19.52■□□□□ 0.72
PTCH1-217ENST00000548420 PTCD1O75127 700 aaKnown RBP19.51■□□□□ 0.71
PTCH1-217ENST00000548420 MAP2K2P36507 400 aa19.51■□□□□ 0.71
PTCH1-217ENST00000548420 CCER1Q8TC90 406 aaPredicted RBP19.51■□□□□ 0.71
PTCH1-217ENST00000548420 ZNF622Q969S3 477 aaKnown RBP eCLIP19.51■□□□□ 0.71
PTCH1-217ENST00000548420 GGNBP2Q9H3C7 697 aa19.51■□□□□ 0.71
PTCH1-217ENST00000548420 FLT4P35916 1363 aa19.51■□□□□ 0.71
PTCH1-217ENST00000548420 SLX4Q8IY92 1834 aa19.51■□□□□ 0.71
PTCH1-217ENST00000548420 COL11A2P13942 1736 aaPredicted RBP19.51■□□□□ 0.71
PTCH1-217ENST00000548420 FYB1O15117 783 aa19.5■□□□□ 0.71
PTCH1-217ENST00000548420 ERVV-2B6SEH9 535 aa19.49■□□□□ 0.71
PTCH1-217ENST00000548420 ZPR1O75312 459 aa19.49■□□□□ 0.71
PTCH1-217ENST00000548420 HABP4Q5JVS0 413 aaKnown RBP19.49■□□□□ 0.71
PTCH1-217ENST00000548420 RNF123Q5XPI4 1314 aa19.49■□□□□ 0.71
PTCH1-217ENST00000548420 CA12O43570 354 aa19.48■□□□□ 0.71
PTCH1-217ENST00000548420 TESK2Q96S53 571 aa19.48■□□□□ 0.71
PTCH1-217ENST00000548420 TLL2Q9Y6L7 1015 aa19.48■□□□□ 0.71
PTCH1-217ENST00000548420 PNMA8AQ86V59 439 aaPredicted RBP19.47■□□□□ 0.71
PTCH1-217ENST00000548420 PUS7Q96PZ0 661 aaKnown RBP19.47■□□□□ 0.71
PTCH1-217ENST00000548420 EYA1Q99502 592 aa19.47■□□□□ 0.71
PTCH1-217ENST00000548420 TRPM7Q96QT4 1865 aa19.46■□□□□ 0.71
PTCH1-217ENST00000548420 ST20-MTHFSA0A0A6YYL1 179 aa19.46■□□□□ 0.71
PTCH1-217ENST00000548420 TRAF5O00463 557 aa19.46■□□□□ 0.71
PTCH1-217ENST00000548420 SOS1Q07889 1333 aaPredicted RBP19.46■□□□□ 0.71
PTCH1-217ENST00000548420 CACNA1SQ13698 1873 aa19.45■□□□□ 0.7
PTCH1-217ENST00000548420 CCDC24Q8N4L8 307 aa19.45■□□□□ 0.7
PTCH1-217ENST00000548420 NARFQ9UHQ1 456 aa19.45■□□□□ 0.7
PTCH1-217ENST00000548420 EMILIN1Q9Y6C2 1016 aa19.45■□□□□ 0.7
PTCH1-217ENST00000548420 SLC24A1O60721 1099 aa19.44■□□□□ 0.7
PTCH1-217ENST00000548420 ZIC5Q96T25 663 aa19.44■□□□□ 0.7
PTCH1-217ENST00000548420 KIF24Q5T7B8 1368 aa19.44■□□□□ 0.7
PTCH1-217ENST00000548420 BRPF1P55201 1214 aaPredicted RBP19.43■□□□□ 0.7
PTCH1-217ENST00000548420 CIAPIN1Q6FI81 312 aa19.43■□□□□ 0.7
PTCH1-217ENST00000548420 GCC1Q96CN9 775 aa19.42■□□□□ 0.7
PTCH1-217ENST00000548420 DNAJC10Q8IXB1 793 aa19.41■□□□□ 0.7
PTCH1-217ENST00000548420 CABP4P57796 275 aa19.4■□□□□ 0.7
PTCH1-217ENST00000548420 PRPF40BQ6NWY9 871 aaKnown RBP19.4■□□□□ 0.7
PTCH1-217ENST00000548420 BICDL1Q6ZP65 573 aa19.4■□□□□ 0.7
PTCH1-217ENST00000548420 SAPCD2Q86UD0 394 aa19.4■□□□□ 0.7
PTCH1-217ENST00000548420 C7orf43Q8WVR3 580 aa19.4■□□□□ 0.7
PTCH1-217ENST00000548420 BRIP1Q9BX63 1249 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms