RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 SLC39A6Q13433 755 aa16.78■□□□□ 0.28
PTCH1-215ENST00000547672 BARGINQ6ZT62 677 aa16.78■□□□□ 0.28
PTCH1-215ENST00000547672 NUTM2AQ8IVF1 878 aaPredicted RBP16.78■□□□□ 0.28
PTCH1-215ENST00000547672 VSIG10Q8N0Z9 540 aa16.78■□□□□ 0.28
PTCH1-215ENST00000547672 DCTPP1Q9H773 170 aa16.78■□□□□ 0.28
PTCH1-215ENST00000547672 PHAXQ9H814 394 aaKnown RBP16.78■□□□□ 0.28
PTCH1-215ENST00000547672 NWD2Q9ULI1 1742 aa16.78■□□□□ 0.28
PTCH1-215ENST00000547672 ATP10DQ9P241 1426 aa16.78■□□□□ 0.28
PTCH1-215ENST00000547672 SPATA31A1Q5TZJ5 1347 aa16.77■□□□□ 0.28
PTCH1-215ENST00000547672 PI4KAP2A4QPH2 592 aa16.77■□□□□ 0.28
PTCH1-215ENST00000547672 CHD1LQ86WJ1 897 aa16.77■□□□□ 0.28
PTCH1-215ENST00000547672 PI4KAP1Q8N8J0 262 aa16.77■□□□□ 0.28
PTCH1-215ENST00000547672 DISP2A7MBM2 1401 aa16.77■□□□□ 0.27
PTCH1-215ENST00000547672 PLCH1Q4KWH8 1693 aa16.76■□□□□ 0.27
PTCH1-215ENST00000547672 CEP85Q6P2H3 762 aa16.76■□□□□ 0.27
PTCH1-215ENST00000547672 MEIS3Q99687 375 aa16.76■□□□□ 0.27
PTCH1-215ENST00000547672 ANKRD45Q5TZF3 282 aa16.75■□□□□ 0.27
PTCH1-215ENST00000547672 RIC3Q7Z5B4 369 aa16.75■□□□□ 0.27
PTCH1-215ENST00000547672 UNC5CLQ8IV45 518 aa16.75■□□□□ 0.27
PTCH1-215ENST00000547672 LINS1Q8NG48 757 aa16.75■□□□□ 0.27
PTCH1-215ENST00000547672 N4BP2Q86UW6 1770 aaPredicted RBP16.74■□□□□ 0.27
PTCH1-215ENST00000547672 SPATA31A5Q5VU36 1347 aa16.74■□□□□ 0.27
PTCH1-215ENST00000547672 SPATA31A7Q8IWB4 1347 aa16.74■□□□□ 0.27
PTCH1-215ENST00000547672 ANP32AP39687 249 aaKnown RBP16.74■□□□□ 0.27
PTCH1-215ENST00000547672 ATP8B2P98198 1209 aa16.74■□□□□ 0.27
PTCH1-215ENST00000547672 DDB1Q16531 1140 aa16.74■□□□□ 0.27
PTCH1-215ENST00000547672 BEND3Q5T5X7 828 aa16.74■□□□□ 0.27
PTCH1-215ENST00000547672 NGLY1Q96IV0 654 aa16.74■□□□□ 0.27
PTCH1-215ENST00000547672 CCDC9Q9Y3X0 531 aaKnown RBP16.74■□□□□ 0.27
PTCH1-215ENST00000547672 STARD3NLO95772 234 aa16.73■□□□□ 0.27
PTCH1-215ENST00000547672 HSP90AB4PQ58FF6 505 aa16.73■□□□□ 0.27
PTCH1-215ENST00000547672 SIRT2Q8IXJ6 389 aa16.73■□□□□ 0.27
PTCH1-215ENST00000547672 USP44Q9H0E7 712 aa16.73■□□□□ 0.27
PTCH1-215ENST00000547672 C1orf115Q9H7X2 142 aa16.73■□□□□ 0.27
PTCH1-215ENST00000547672 C9orf78Q9NZ63 289 aaPredicted RBP16.73■□□□□ 0.27
PTCH1-215ENST00000547672 MAP3K2Q9Y2U5 619 aa16.73■□□□□ 0.27
PTCH1-215ENST00000547672 SLIT2O94813 1529 aa16.72■□□□□ 0.27
PTCH1-215ENST00000547672 LRP6O75581 1613 aa16.72■□□□□ 0.27
PTCH1-215ENST00000547672 ANKRD13DQ6ZTN6 518 aa16.72■□□□□ 0.27
PTCH1-215ENST00000547672 USP16Q9Y5T5 823 aa16.72■□□□□ 0.27
PTCH1-215ENST00000547672 TNS2Q63HR2 1409 aa16.71■□□□□ 0.27
PTCH1-215ENST00000547672 PDIA6Q15084 440 aa16.71■□□□□ 0.27
PTCH1-215ENST00000547672 VPS72Q15906 364 aa16.71■□□□□ 0.27
PTCH1-215ENST00000547672 UPF2Q9HAU5 1272 aaKnown RBP16.71■□□□□ 0.27
PTCH1-215ENST00000547672 ADCY9O60503 1353 aa16.7■□□□□ 0.26
PTCH1-215ENST00000547672 COPS6Q7L5N1 327 aa16.7■□□□□ 0.26
PTCH1-215ENST00000547672 FNBP4Q8N3X1 1017 aaPredicted RBP16.7■□□□□ 0.26
PTCH1-215ENST00000547672 PLBD2Q8NHP8 589 aa16.7■□□□□ 0.26
PTCH1-215ENST00000547672 SHANK3Q9BYB0 1731 aa16.7■□□□□ 0.26
PTCH1-215ENST00000547672 RAB11FIP3O75154 756 aa16.69■□□□□ 0.26
PTCH1-215ENST00000547672 MYL6BP14649 208 aa16.69■□□□□ 0.26
PTCH1-215ENST00000547672 AIMP1Q12904 312 aaKnown RBP16.69■□□□□ 0.26
PTCH1-215ENST00000547672 XAGE3Q8WTP9 111 aa16.69■□□□□ 0.26
PTCH1-215ENST00000547672 METTL22Q9BUU2 404 aaPredicted RBP16.69■□□□□ 0.26
PTCH1-215ENST00000547672 NRAPQ86VF7 1730 aa16.69■□□□□ 0.26
PTCH1-215ENST00000547672 PRAMEF22A3QJZ6 481 aa16.68■□□□□ 0.26
PTCH1-215ENST00000547672 PIGBQ92521 554 aa16.68■□□□□ 0.26
PTCH1-215ENST00000547672 LNPKQ9C0E8 428 aa16.68■□□□□ 0.26
PTCH1-215ENST00000547672 LAMB4A4D0S4 1761 aa16.68■□□□□ 0.26
PTCH1-215ENST00000547672 UBR2Q8IWV8 1755 aa16.67■□□□□ 0.26
PTCH1-215ENST00000547672 PTCD1O75127 700 aaKnown RBP16.67■□□□□ 0.26
PTCH1-215ENST00000547672 ANXA1P04083 346 aa16.67■□□□□ 0.26
PTCH1-215ENST00000547672 PROSER3Q2NL68 480 aa16.67■□□□□ 0.26
PTCH1-215ENST00000547672 NPM2Q86SE8 214 aaKnown RBP16.67■□□□□ 0.26
PTCH1-215ENST00000547672 SMARCC1Q92922 1105 aaPredicted RBP16.67■□□□□ 0.26
PTCH1-215ENST00000547672 LRRFIP2Q9Y608 721 aaKnown RBP16.67■□□□□ 0.26
PTCH1-215ENST00000547672 UTYO14607 1347 aa16.67■□□□□ 0.26
PTCH1-215ENST00000547672 PAPPAQ13219 1627 aa16.67■□□□□ 0.26
PTCH1-215ENST00000547672 WNK3Q9BYP7 1800 aa16.66■□□□□ 0.26
PTCH1-215ENST00000547672 GRM8O00222 908 aa16.66■□□□□ 0.26
PTCH1-215ENST00000547672 BCL9O00512 1426 aa16.66■□□□□ 0.26
PTCH1-215ENST00000547672 MEX3CQ5U5Q3 659 aaKnown RBP16.66■□□□□ 0.26
PTCH1-215ENST00000547672 SSH3Q8TE77 659 aa16.66■□□□□ 0.26
PTCH1-215ENST00000547672 C8orf37Q96NL8 207 aa16.66■□□□□ 0.26
PTCH1-215ENST00000547672 MTX1Q13505 466 aa16.65■□□□□ 0.26
PTCH1-215ENST00000547672 C8orf34Q49A92 452 aa16.65■□□□□ 0.26
PTCH1-215ENST00000547672 BMP2KLQ5H9B9 411 aa16.65■□□□□ 0.26
PTCH1-215ENST00000547672 DDRGK1Q96HY6 314 aa16.65■□□□□ 0.26
PTCH1-215ENST00000547672 ATG3Q9NT62 314 aa16.65■□□□□ 0.26
PTCH1-215ENST00000547672 ERC1Q8IUD2 1116 aa16.64■□□□□ 0.25
PTCH1-215ENST00000547672 RBM42Q9BTD8 480 aaKnown RBP16.64■□□□□ 0.25
PTCH1-215ENST00000547672 LRRCC1Q9C099 1032 aa16.64■□□□□ 0.25
PTCH1-215ENST00000547672 USP21Q9UK80 565 aa16.64■□□□□ 0.25
PTCH1-215ENST00000547672 C5P01031 1676 aa16.64■□□□□ 0.25
PTCH1-215ENST00000547672 KCPQ6ZWJ8 1503 aa16.64■□□□□ 0.25
PTCH1-215ENST00000547672 PRIM1P49642 420 aaKnown RBP16.63■□□□□ 0.25
PTCH1-215ENST00000547672 POLA2Q14181 598 aa16.63■□□□□ 0.25
PTCH1-215ENST00000547672 SKAP1Q86WV1 359 aa16.63■□□□□ 0.25
PTCH1-215ENST00000547672 SYTL4Q96C24 671 aaPredicted RBP16.63■□□□□ 0.25
PTCH1-215ENST00000547672 ASAP1Q9ULH1 1129 aa16.63■□□□□ 0.25
PTCH1-215ENST00000547672 NEURL1BA8MQ27 555 aa16.62■□□□□ 0.25
PTCH1-215ENST00000547672 SRGAP3O43295 1099 aa16.62■□□□□ 0.25
PTCH1-215ENST00000547672 GCKRQ14397 625 aa16.62■□□□□ 0.25
PTCH1-215ENST00000547672 KIF6Q6ZMV9 814 aa16.62■□□□□ 0.25
PTCH1-215ENST00000547672 LRP10Q7Z4F1 713 aa16.62■□□□□ 0.25
PTCH1-215ENST00000547672 PPP1R42Q7Z4L9 355 aa16.62■□□□□ 0.25
PTCH1-215ENST00000547672 MYD88Q99836 296 aa16.62■□□□□ 0.25
PTCH1-215ENST00000547672 ITGB4P16144 1822 aa16.61■□□□□ 0.25
PTCH1-215ENST00000547672 NBPF7P0C2Y1 421 aaPredicted RBP16.61■□□□□ 0.25
PTCH1-215ENST00000547672 HSP90AB3PQ58FF7 597 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms