RNA–Protein interactions for RNA: ENST00000546512.5

LINC00661-201, long intergenic non-protein coding RNA 661, humanhuman

TSL 4

Gene LINC00661, Length 544 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-201ENST00000546512 CD2APQ9Y5K6 639 aa17.2■□□□□ 0.34
LINC00661-201ENST00000546512 USP42Q9H9J4 1324 aaKnown RBP17.2■□□□□ 0.34
LINC00661-201ENST00000546512 CANXP27824 592 aaKnown RBP17.19■□□□□ 0.34
LINC00661-201ENST00000546512 TAF7Q15545 349 aaPredicted RBP17.19■□□□□ 0.34
LINC00661-201ENST00000546512 COL15A1P39059 1388 aa17.18■□□□□ 0.34
LINC00661-201ENST00000546512 PELP1Q8IZL8 1130 aaKnown RBP17.18■□□□□ 0.34
LINC00661-201ENST00000546512 ZPR1O75312 459 aa17.17■□□□□ 0.34
LINC00661-201ENST00000546512 GPR162Q16538 588 aa17.17■□□□□ 0.34
LINC00661-201ENST00000546512 CCDC146Q8IYE0 955 aa17.17■□□□□ 0.34
LINC00661-201ENST00000546512 THUMPD2Q9BTF0 503 aaKnown RBP17.17■□□□□ 0.34
LINC00661-201ENST00000546512 RIPK4P57078 832 aa17.16■□□□□ 0.34
LINC00661-201ENST00000546512 FKBP8Q14318 412 aa17.16■□□□□ 0.34
LINC00661-201ENST00000546512 USPL1Q5W0Q7 1092 aa17.16■□□□□ 0.34
LINC00661-201ENST00000546512 PNISRQ8TF01 805 aaKnown RBP17.16■□□□□ 0.34
LINC00661-201ENST00000546512 MIS18AQ9NYP9 233 aa17.16■□□□□ 0.34
LINC00661-201ENST00000546512 SNRPA1P09661 255 aaKnown RBP17.15■□□□□ 0.34
LINC00661-201ENST00000546512 TMPOP42166 694 aaKnown RBP17.15■□□□□ 0.34
LINC00661-201ENST00000546512 NARFQ9UHQ1 456 aa17.15■□□□□ 0.34
LINC00661-201ENST00000546512 ADAMTS8Q9UP79 889 aa17.15■□□□□ 0.34
LINC00661-201ENST00000546512 PARP3Q9Y6F1 533 aa17.15■□□□□ 0.34
LINC00661-201ENST00000546512 PRAMEF22A3QJZ6 481 aa17.14■□□□□ 0.33
LINC00661-201ENST00000546512 EIF5P55010 431 aaKnown RBP17.14■□□□□ 0.33
LINC00661-201ENST00000546512 RUNDC1Q96C34 613 aa17.14■□□□□ 0.33
LINC00661-201ENST00000546512 ZNF330Q9Y3S2 320 aaPredicted RBP17.14■□□□□ 0.33
LINC00661-201ENST00000546512 USP16Q9Y5T5 823 aa17.14■□□□□ 0.33
LINC00661-201ENST00000546512 A1BGP04217 495 aa17.13■□□□□ 0.33
LINC00661-201ENST00000546512 YY1P25490 414 aa17.13■□□□□ 0.33
LINC00661-201ENST00000546512 IL6STP40189 918 aaPredicted RBP17.13■□□□□ 0.33
LINC00661-201ENST00000546512 LMOD3Q0VAK6 560 aa17.13■□□□□ 0.33
LINC00661-201ENST00000546512 RRP7AQ9Y3A4 280 aaKnown RBP17.13■□□□□ 0.33
LINC00661-201ENST00000546512 A0A087WZG4 1122 aa17.12■□□□□ 0.33
LINC00661-201ENST00000546512 NEUROD2Q15784 382 aa17.12■□□□□ 0.33
LINC00661-201ENST00000546512 KDM3BQ7LBC6 1761 aa17.12■□□□□ 0.33
LINC00661-201ENST00000546512 C10orf71Q711Q0 1435 aa17.12■□□□□ 0.33
LINC00661-201ENST00000546512 DDR1Q08345 913 aa17.11■□□□□ 0.33
LINC00661-201ENST00000546512 NPM2Q86SE8 214 aaKnown RBP17.11■□□□□ 0.33
LINC00661-201ENST00000546512 YBX3P16989 372 aaKnown RBP eCLIP17.1■□□□□ 0.33
LINC00661-201ENST00000546512 TM4SF1P30408 202 aa17.1■□□□□ 0.33
LINC00661-201ENST00000546512 PIP4K2AP48426 406 aaPredicted RBP17.1■□□□□ 0.33
LINC00661-201ENST00000546512 BCL2L12Q9HB09 334 aa17.1■□□□□ 0.33
LINC00661-201ENST00000546512 GOLGB1Q14789 3259 aaKnown RBP17.09■□□□□ 0.33
LINC00661-201ENST00000546512 POLRMTO00411 1230 aaKnown RBP17.09■□□□□ 0.33
LINC00661-201ENST00000546512 ANP32CO43423 234 aa17.09■□□□□ 0.33
LINC00661-201ENST00000546512 EIF4A1P60842 406 aaKnown RBP17.09■□□□□ 0.33
LINC00661-201ENST00000546512 NFIXQ14938 502 aa17.09■□□□□ 0.33
LINC00661-201ENST00000546512 TSPYL4Q9UJ04 414 aa17.09■□□□□ 0.33
LINC00661-201ENST00000546512 WWC3Q9ULE0 1092 aa17.09■□□□□ 0.33
LINC00661-201ENST00000546512 TBC1D2BQ9UPU7 963 aa17.09■□□□□ 0.33
LINC00661-201ENST00000546512 KIF13BQ9NQT8 1826 aa17.09■□□□□ 0.33
LINC00661-201ENST00000546512 UTRNP46939 3433 aa17.08■□□□□ 0.33
LINC00661-201ENST00000546512 PXDNLA1KZ92 1463 aa17.08■□□□□ 0.32
LINC00661-201ENST00000546512 TGFB2P61812 414 aa17.08■□□□□ 0.32
LINC00661-201ENST00000546512 SCN7AQ01118 1682 aa17.07■□□□□ 0.32
LINC00661-201ENST00000546512 GRIN3BO60391 1043 aa17.07■□□□□ 0.32
LINC00661-201ENST00000546512 GIGYF1O75420 1035 aaPredicted RBP17.07■□□□□ 0.32
LINC00661-201ENST00000546512 CCDC184Q52MB2 194 aa17.07■□□□□ 0.32
LINC00661-201ENST00000546512 DZIP3Q86Y13 1208 aaKnown RBP17.07■□□□□ 0.32
LINC00661-201ENST00000546512 LAMB4A4D0S4 1761 aa17.07■□□□□ 0.32
LINC00661-201ENST00000546512 A0A0G2JLW4 131 aa17.06■□□□□ 0.32
LINC00661-201ENST00000546512 BICDL1Q6ZP65 573 aa17.06■□□□□ 0.32
LINC00661-201ENST00000546512 BABAM1Q9NWV8 329 aa17.06■□□□□ 0.32
LINC00661-201ENST00000546512 TRIM35Q9UPQ4 493 aa17.06■□□□□ 0.32
LINC00661-201ENST00000546512 KIAA1551Q9HCM1 1747 aa17.06■□□□□ 0.32
LINC00661-201ENST00000546512 NBPF26B4DH59 902 aa17.05■□□□□ 0.32
LINC00661-201ENST00000546512 CAMTA2O94983 1202 aa17.05■□□□□ 0.32
LINC00661-201ENST00000546512 TBC1D9BQ66K14 1250 aa17.05■□□□□ 0.32
LINC00661-201ENST00000546512 NBPF10Q6P3W6 841 aaKnown RBP17.05■□□□□ 0.32
LINC00661-201ENST00000546512 NBPF15Q8N660 670 aa17.05■□□□□ 0.32
LINC00661-201ENST00000546512 N4BP2Q86UW6 1770 aaPredicted RBP17.05■□□□□ 0.32
LINC00661-201ENST00000546512 APAF1O14727 1248 aa17.04■□□□□ 0.32
LINC00661-201ENST00000546512 SERPINB2P05120 415 aa17.04■□□□□ 0.32
LINC00661-201ENST00000546512 DPEP1P16444 411 aa17.04■□□□□ 0.32
LINC00661-201ENST00000546512 CHD4Q14839 1912 aa17.04■□□□□ 0.32
LINC00661-201ENST00000546512 LAS1LQ9Y4W2 734 aaKnown RBP17.03■□□□□ 0.32
LINC00661-201ENST00000546512 BCORQ6W2J9 1755 aa17.02■□□□□ 0.32
LINC00661-201ENST00000546512 NRXN2Q9P2S2 1712 aa17.02■□□□□ 0.32
LINC00661-201ENST00000546512 MRS2Q9HD23 443 aa17.02■□□□□ 0.32
LINC00661-201ENST00000546512 AFDNP55196 1824 aaKnown RBP17.02■□□□□ 0.31
LINC00661-201ENST00000546512 CHL1O00533 1208 aa17.01■□□□□ 0.31
LINC00661-201ENST00000546512 BCS1LQ9Y276 419 aa17.01■□□□□ 0.31
LINC00661-201ENST00000546512 CARMIL3Q8ND23 1372 aa17.01■□□□□ 0.31
LINC00661-201ENST00000546512 MYL6BP14649 208 aa17■□□□□ 0.31
LINC00661-201ENST00000546512 NGEFQ8N5V2 710 aa17■□□□□ 0.31
LINC00661-201ENST00000546512 SETDB2Q96T68 719 aa17■□□□□ 0.31
LINC00661-201ENST00000546512 ZNF652Q9Y2D9 606 aa17■□□□□ 0.31
LINC00661-201ENST00000546512 KCNA3P22001 575 aa16.99■□□□□ 0.31
LINC00661-201ENST00000546512 CHRNA5P30532 468 aa16.99■□□□□ 0.31
LINC00661-201ENST00000546512 CLEC4GQ6UXB4 293 aa16.99■□□□□ 0.31
LINC00661-201ENST00000546512 PIM2Q9P1W9 311 aa16.99■□□□□ 0.31
LINC00661-201ENST00000546512 ERBB4Q15303 1308 aa16.98■□□□□ 0.31
LINC00661-201ENST00000546512 EIF2S2P20042 333 aaKnown RBP16.98■□□□□ 0.31
LINC00661-201ENST00000546512 NPHP1O15259 732 aa16.97■□□□□ 0.31
LINC00661-201ENST00000546512 KRT24Q2M2I5 525 aa16.97■□□□□ 0.31
LINC00661-201ENST00000546512 PRR5LQ6MZQ0 368 aa16.97■□□□□ 0.31
LINC00661-201ENST00000546512 CFAP44Q96MT7 982 aa16.97■□□□□ 0.31
LINC00661-201ENST00000546512 BRCA1P38398 1863 aaKnown RBP16.97■□□□□ 0.31
LINC00661-201ENST00000546512 RGL2O15211 777 aa16.96■□□□□ 0.31
LINC00661-201ENST00000546512 CALD1Q05682 793 aaKnown RBP16.96■□□□□ 0.31
LINC00661-201ENST00000546512 HLFQ16534 295 aa16.96■□□□□ 0.31
LINC00661-201ENST00000546512 DALRD3Q5D0E6 543 aaKnown RBP16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms