RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 AK7Q96M32 723 aa12.3□□□□□ -0.44
YBX3-215ENST00000544504 ADAMTS7Q9UKP4 1686 aa12.29□□□□□ -0.44
YBX3-215ENST00000544504 ERVV-2B6SEH9 535 aa12.29□□□□□ -0.44
YBX3-215ENST00000544504 CHL1O00533 1208 aa12.29□□□□□ -0.44
YBX3-215ENST00000544504 CYP27B1O15528 508 aa12.29□□□□□ -0.44
YBX3-215ENST00000544504 FSTL1Q12841 308 aa12.29□□□□□ -0.44
YBX3-215ENST00000544504 DCTN1Q14203 1278 aa12.29□□□□□ -0.44
YBX3-215ENST00000544504 MPRIPQ6WCQ1 1025 aa12.29□□□□□ -0.44
YBX3-215ENST00000544504 ZNF428Q96B54 188 aa12.29□□□□□ -0.44
YBX3-215ENST00000544504 CHMP4AQ9BY43 222 aa12.29□□□□□ -0.44
YBX3-215ENST00000544504 LAS1LQ9Y4W2 734 aaKnown RBP12.29□□□□□ -0.44
YBX3-215ENST00000544504 FANCIQ9NVI1 1328 aa12.29□□□□□ -0.44
YBX3-215ENST00000544504 PALLDQ8WX93 1383 aa12.29□□□□□ -0.44
YBX3-215ENST00000544504 C5P01031 1676 aa12.29□□□□□ -0.44
YBX3-215ENST00000544504 WDR90Q96KV7 1748 aa12.28□□□□□ -0.44
YBX3-215ENST00000544504 C16orf71Q8IYS4 520 aaPredicted RBP12.28□□□□□ -0.44
YBX3-215ENST00000544504 THUMPD2Q9BTF0 503 aaKnown RBP12.28□□□□□ -0.44
YBX3-215ENST00000544504 NMRK2Q9NPI5 230 aa12.28□□□□□ -0.44
YBX3-215ENST00000544504 TSPYL4Q9UJ04 414 aa12.28□□□□□ -0.44
YBX3-215ENST00000544504 SOS1Q07889 1333 aaPredicted RBP12.28□□□□□ -0.44
YBX3-215ENST00000544504 SCN11AQ9UI33 1791 aa12.28□□□□□ -0.44
YBX3-215ENST00000544504 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.27□□□□□ -0.45
YBX3-215ENST00000544504 HTRA3P83110 453 aa12.27□□□□□ -0.45
YBX3-215ENST00000544504 SPINK5Q9NQ38 1064 aaPredicted RBP12.27□□□□□ -0.45
YBX3-215ENST00000544504 PHF14O94880 888 aa12.26□□□□□ -0.45
YBX3-215ENST00000544504 SSFA2P28290 1259 aa12.26□□□□□ -0.45
YBX3-215ENST00000544504 CABP4P57796 275 aa12.26□□□□□ -0.45
YBX3-215ENST00000544504 AMIGO3Q86WK7 504 aa12.26□□□□□ -0.45
YBX3-215ENST00000544504 SLC52A2Q9HAB3 445 aa12.26□□□□□ -0.45
YBX3-215ENST00000544504 LGR6Q9HBX8 967 aa12.26□□□□□ -0.45
YBX3-215ENST00000544504 MBIPQ9NS73 344 aa12.26□□□□□ -0.45
YBX3-215ENST00000544504 RCAN3Q9UKA8 241 aa12.26□□□□□ -0.45
YBX3-215ENST00000544504 KDM6AO15550 1401 aaPredicted RBP12.26□□□□□ -0.45
YBX3-215ENST00000544504 MRC1P22897 1456 aa12.26□□□□□ -0.45
YBX3-215ENST00000544504 BTBD11A6QL63 1104 aa12.25□□□□□ -0.45
YBX3-215ENST00000544504 TGFB2P61812 414 aa12.25□□□□□ -0.45
YBX3-215ENST00000544504 SMARCC1Q92922 1105 aaPredicted RBP12.25□□□□□ -0.45
YBX3-215ENST00000544504 TSR2Q969E8 191 aaKnown RBP12.25□□□□□ -0.45
YBX3-215ENST00000544504 PXDNLA1KZ92 1463 aa12.24□□□□□ -0.45
YBX3-215ENST00000544504 C4BP0C0L5 1744 aa12.24□□□□□ -0.45
YBX3-215ENST00000544504 EXOSC9Q06265 439 aaKnown RBP12.24□□□□□ -0.45
YBX3-215ENST00000544504 VIRMAQ69YN4 1812 aaKnown RBP12.24□□□□□ -0.45
YBX3-215ENST00000544504 ARHGAP27Q6ZUM4 889 aa12.24□□□□□ -0.45
YBX3-215ENST00000544504 BCS1LQ9Y276 419 aa12.24□□□□□ -0.45
YBX3-215ENST00000544504 HOXB7P09629 217 aa12.23□□□□□ -0.45
YBX3-215ENST00000544504 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.23□□□□□ -0.45
YBX3-215ENST00000544504 TMOD3Q9NYL9 352 aa12.23□□□□□ -0.45
YBX3-215ENST00000544504 SIPA1L3O60292 1781 aaPredicted RBP12.23□□□□□ -0.45
YBX3-215ENST00000544504 KDM2BQ8NHM5 1336 aa12.22□□□□□ -0.45
YBX3-215ENST00000544504 MMP10P09238 476 aa12.22□□□□□ -0.45
YBX3-215ENST00000544504 TWISTNBQ3B726 338 aaPredicted RBP12.22□□□□□ -0.45
YBX3-215ENST00000544504 ALDH1L2Q3SY69 923 aa12.22□□□□□ -0.45
YBX3-215ENST00000544504 TTC5Q8N0Z6 440 aa12.22□□□□□ -0.45
YBX3-215ENST00000544504 NFATC2IPQ8NCF5 419 aa12.22□□□□□ -0.45
YBX3-215ENST00000544504 KDM3BQ7LBC6 1761 aa12.21□□□□□ -0.45
YBX3-215ENST00000544504 TOGARAM1Q9Y4F4 1720 aa12.21□□□□□ -0.45
YBX3-215ENST00000544504 A0A0G2JLW4 131 aa12.21□□□□□ -0.45
YBX3-215ENST00000544504 NEFLP07196 543 aa12.21□□□□□ -0.45
YBX3-215ENST00000544504 SMIM5Q71RC9 77 aa12.21□□□□□ -0.45
YBX3-215ENST00000544504 TAF1LQ8IZX4 1826 aa12.21□□□□□ -0.46
YBX3-215ENST00000544504 C10orf71Q711Q0 1435 aa12.2□□□□□ -0.46
YBX3-215ENST00000544504 SLC34A2O95436 690 aa12.2□□□□□ -0.46
YBX3-215ENST00000544504 C9orf131Q5VYM1 1079 aa12.2□□□□□ -0.46
YBX3-215ENST00000544504 ZNF790Q6PG37 636 aa12.2□□□□□ -0.46
YBX3-215ENST00000544504 HSPA1AP0DMV8 641 aaKnown RBP12.19□□□□□ -0.46
YBX3-215ENST00000544504 HSPA1BP0DMV9 641 aaKnown RBP12.19□□□□□ -0.46
YBX3-215ENST00000544504 EIF4A1P60842 406 aaKnown RBP12.19□□□□□ -0.46
YBX3-215ENST00000544504 LINC00116Q8NCU8 138 aa12.19□□□□□ -0.46
YBX3-215ENST00000544504 SMC1BQ8NDV3 1235 aa12.19□□□□□ -0.46
YBX3-215ENST00000544504 FMNL2Q96PY5 1086 aa12.19□□□□□ -0.46
YBX3-215ENST00000544504 MIS18AQ9NYP9 233 aa12.19□□□□□ -0.46
YBX3-215ENST00000544504 UBR3Q6ZT12 1888 aa12.19□□□□□ -0.46
YBX3-215ENST00000544504 LOC102724428A0A0B4J2F2 783 aa12.18□□□□□ -0.46
YBX3-215ENST00000544504 GNPATO15228 680 aa12.18□□□□□ -0.46
YBX3-215ENST00000544504 VAMP4O75379 141 aa12.18□□□□□ -0.46
YBX3-215ENST00000544504 MS4A1P11836 297 aa12.18□□□□□ -0.46
YBX3-215ENST00000544504 RARSP54136 660 aaKnown RBP12.18□□□□□ -0.46
YBX3-215ENST00000544504 SIK1P57059 783 aa12.18□□□□□ -0.46
YBX3-215ENST00000544504 NLGN1Q8N2Q7 840 aa12.18□□□□□ -0.46
YBX3-215ENST00000544504 C8orf58Q8NAV2 365 aa12.18□□□□□ -0.46
YBX3-215ENST00000544504 PIGBQ92521 554 aa12.18□□□□□ -0.46
YBX3-215ENST00000544504 SUPT16HQ9Y5B9 1047 aaKnown RBP12.18□□□□□ -0.46
YBX3-215ENST00000544504 KCPQ6ZWJ8 1503 aa12.17□□□□□ -0.46
YBX3-215ENST00000544504 RNF123Q5XPI4 1314 aa12.17□□□□□ -0.46
YBX3-215ENST00000544504 KIF16BQ96L93 1317 aa12.17□□□□□ -0.46
YBX3-215ENST00000544504 IPO8O15397 1037 aaKnown RBP12.17□□□□□ -0.46
YBX3-215ENST00000544504 DPEP1P16444 411 aa12.17□□□□□ -0.46
YBX3-215ENST00000544504 BRPF1P55201 1214 aaPredicted RBP12.17□□□□□ -0.46
YBX3-215ENST00000544504 CCDC30Q5VVM6 783 aa12.17□□□□□ -0.46
YBX3-215ENST00000544504 STK31Q9BXU1 1019 aa12.17□□□□□ -0.46
YBX3-215ENST00000544504 RRAGCQ9HB90 399 aa12.17□□□□□ -0.46
YBX3-215ENST00000544504 SMC4Q9NTJ3 1288 aa12.17□□□□□ -0.46
YBX3-215ENST00000544504 CCDC87Q9NVE4 849 aa12.17□□□□□ -0.46
YBX3-215ENST00000544504 HEG1Q9ULI3 1381 aa12.17□□□□□ -0.46
YBX3-215ENST00000544504 KIF13BQ9NQT8 1826 aa12.16□□□□□ -0.46
YBX3-215ENST00000544504 SNRPA1P09661 255 aaKnown RBP12.16□□□□□ -0.46
YBX3-215ENST00000544504 VSIG10Q8N0Z9 540 aa12.16□□□□□ -0.46
YBX3-215ENST00000544504 TEX13AQ9BXU3 409 aaPredicted RBP12.16□□□□□ -0.46
YBX3-215ENST00000544504 KIAA1551Q9HCM1 1747 aa12.16□□□□□ -0.46
YBX3-215ENST00000544504 ITGB4P16144 1822 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms