RNA–Protein interactions for RNA: ENST00000544272.1

USP28-211, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 656 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-211ENST00000544272 ITPKCQ96DU7 683 aa7.89□□□□□ -1.15
USP28-211ENST00000544272 RBCK1Q9BYM8 510 aa7.89□□□□□ -1.15
USP28-211ENST00000544272 WASF2Q9Y6W5 498 aa7.89□□□□□ -1.15
USP28-211ENST00000544272 V9GY48 417 aaPredicted RBP7.89□□□□□ -1.15
USP28-211ENST00000544272 EML1O00423 815 aa7.88□□□□□ -1.15
USP28-211ENST00000544272 MPSTP25325 297 aa7.88□□□□□ -1.15
USP28-211ENST00000544272 NBPF15Q8N660 670 aa7.88□□□□□ -1.15
USP28-211ENST00000544272 ZDHHC1Q8WTX9 485 aa7.88□□□□□ -1.15
USP28-211ENST00000544272 IGSF5Q9NSI5 407 aa7.88□□□□□ -1.15
USP28-211ENST00000544272 KIAA1522Q9P206 1035 aaPredicted RBP7.88□□□□□ -1.15
USP28-211ENST00000544272 UNC13AQ9UPW8 1703 aa7.88□□□□□ -1.15
USP28-211ENST00000544272 BICRAQ9NZM4 1560 aa7.88□□□□□ -1.15
USP28-211ENST00000544272 GDF9O60383 454 aa7.87□□□□□ -1.15
USP28-211ENST00000544272 ZIC2O95409 532 aaPredicted RBP7.87□□□□□ -1.15
USP28-211ENST00000544272 TIMP2P16035 220 aa7.87□□□□□ -1.15
USP28-211ENST00000544272 CENPCQ03188 943 aa7.87□□□□□ -1.15
USP28-211ENST00000544272 FOXC1Q12948 553 aa7.87□□□□□ -1.15
USP28-211ENST00000544272 ZSCAN29Q8IWY8 852 aaPredicted RBP7.87□□□□□ -1.15
USP28-211ENST00000544272 GIPC2Q8TF65 315 aa7.87□□□□□ -1.15
USP28-211ENST00000544272 LRFN2Q9ULH4 789 aa7.87□□□□□ -1.15
USP28-211ENST00000544272 SERTM1A2A2V5 107 aa7.86□□□□□ -1.15
USP28-211ENST00000544272 J3QL48 77 aa7.86□□□□□ -1.15
USP28-211ENST00000544272 PPARGC1BQ86YN6 1023 aaKnown RBP7.86□□□□□ -1.15
USP28-211ENST00000544272 ZFAND3Q9H8U3 227 aa7.86□□□□□ -1.15
USP28-211ENST00000544272 TOR4AQ9NXH8 423 aa7.86□□□□□ -1.15
USP28-211ENST00000544272 STIM2Q9P246 746 aa7.86□□□□□ -1.15
USP28-211ENST00000544272 FZD6O60353 706 aa7.85□□□□□ -1.15
USP28-211ENST00000544272 NOS2P35228 1153 aa7.85□□□□□ -1.15
USP28-211ENST00000544272 EIF1AXP47813 144 aaKnown RBP7.85□□□□□ -1.15
USP28-211ENST00000544272 WDR4P57081 412 aaKnown RBP7.85□□□□□ -1.15
USP28-211ENST00000544272 SH3PXD2AQ5TCZ1 1133 aa7.85□□□□□ -1.15
USP28-211ENST00000544272 MRRFQ96E11 262 aaKnown RBP7.85□□□□□ -1.15
USP28-211ENST00000544272 AGBL1Q96MI9 1066 aa7.85□□□□□ -1.15
USP28-211ENST00000544272 CITED4Q96RK1 184 aa7.85□□□□□ -1.15
USP28-211ENST00000544272 PRKD2Q9BZL6 878 aa7.85□□□□□ -1.15
USP28-211ENST00000544272 CHMP3Q9Y3E7 222 aa7.85□□□□□ -1.15
USP28-211ENST00000544272 IGHA2P01877 340 aa7.84□□□□□ -1.15
USP28-211ENST00000544272 FAM26DQ5JW98 314 aa7.84□□□□□ -1.15
USP28-211ENST00000544272 ALKBH2Q6NS38 261 aa7.84□□□□□ -1.15
USP28-211ENST00000544272 TMC7Q7Z402 723 aa7.84□□□□□ -1.15
USP28-211ENST00000544272 CECR2Q9BXF3 1484 aa7.83□□□□□ -1.16
USP28-211ENST00000544272 NDUFB5O43674 189 aa7.83□□□□□ -1.16
USP28-211ENST00000544272 SMPD1P17405 629 aa7.83□□□□□ -1.16
USP28-211ENST00000544272 VAMP1P23763 118 aa7.83□□□□□ -1.16
USP28-211ENST00000544272 GPC1P35052 558 aa7.83□□□□□ -1.16
USP28-211ENST00000544272 ZNF326Q5BKZ1 582 aaKnown RBP7.83□□□□□ -1.16
USP28-211ENST00000544272 MEIOBQ8N635 442 aa7.83□□□□□ -1.16
USP28-211ENST00000544272 ABTB2Q8N961 1025 aa7.83□□□□□ -1.16
USP28-211ENST00000544272 L3MBTL2Q969R5 705 aa7.83□□□□□ -1.16
USP28-211ENST00000544272 NLRP3Q96P20 1036 aa7.83□□□□□ -1.16
USP28-211ENST00000544272 CCDC87Q9NVE4 849 aa7.83□□□□□ -1.16
USP28-211ENST00000544272 TTC24A2A3L6 582 aaPredicted RBP7.82□□□□□ -1.16
USP28-211ENST00000544272 MEN1O00255 615 aa7.82□□□□□ -1.16
USP28-211ENST00000544272 ZBTB39O15060 712 aa7.82□□□□□ -1.16
USP28-211ENST00000544272 TREHO43280 583 aa7.82□□□□□ -1.16
USP28-211ENST00000544272 RELBQ01201 579 aa7.82□□□□□ -1.16
USP28-211ENST00000544272 TAGLNQ01995 201 aaKnown RBP7.82□□□□□ -1.16
USP28-211ENST00000544272 RTN1Q16799 776 aa7.82□□□□□ -1.16
USP28-211ENST00000544272 ALDH16A1Q8IZ83 802 aa7.82□□□□□ -1.16
USP28-211ENST00000544272 CYP4X1Q8N118 509 aa7.82□□□□□ -1.16
USP28-211ENST00000544272 ZSCAN10Q96SZ4 725 aaPredicted RBP7.82□□□□□ -1.16
USP28-211ENST00000544272 GRIP2Q9C0E4 1043 aa7.82□□□□□ -1.16
USP28-211ENST00000544272 PLA2G2EQ9NZK7 142 aa7.82□□□□□ -1.16
USP28-211ENST00000544272 CABP1Q9NZU7 370 aa7.82□□□□□ -1.16
USP28-211ENST00000544272 BRPF3Q9ULD4 1205 aa7.82□□□□□ -1.16
USP28-211ENST00000544272 BRD2P25440 801 aaKnown RBP7.81□□□□□ -1.16
USP28-211ENST00000544272 PRR20EP86478 221 aa7.81□□□□□ -1.16
USP28-211ENST00000544272 PRR20CP86479 221 aa7.81□□□□□ -1.16
USP28-211ENST00000544272 PRR20DP86480 221 aa7.81□□□□□ -1.16
USP28-211ENST00000544272 PRR20BP86481 221 aa7.81□□□□□ -1.16
USP28-211ENST00000544272 PRR20AP86496 221 aa7.81□□□□□ -1.16
USP28-211ENST00000544272 FMR1Q06787 632 aaKnown RBP eCLIP7.81□□□□□ -1.16
USP28-211ENST00000544272 DSC3Q14574 896 aa7.81□□□□□ -1.16
USP28-211ENST00000544272 C1orf53Q5VUE5 145 aa7.81□□□□□ -1.16
USP28-211ENST00000544272 TRIM67Q6ZTA4 783 aa7.81□□□□□ -1.16
USP28-211ENST00000544272 RHBDD1Q8TEB9 315 aa7.81□□□□□ -1.16
USP28-211ENST00000544272 FAM129BQ96TA1 746 aa7.81□□□□□ -1.16
USP28-211ENST00000544272 NIFKQ9BYG3 293 aaKnown RBP7.81□□□□□ -1.16
USP28-211ENST00000544272 ZNF395Q9H8N7 513 aaPredicted RBP7.81□□□□□ -1.16
USP28-211ENST00000544272 P4HBP07237 508 aaKnown RBP7.8□□□□□ -1.16
USP28-211ENST00000544272 RNF144AP50876 292 aaPredicted RBP7.8□□□□□ -1.16
USP28-211ENST00000544272 C11orf91Q3C1V1 193 aa7.8□□□□□ -1.16
USP28-211ENST00000544272 EAPPQ56P03 285 aaPredicted RBP7.8□□□□□ -1.16
USP28-211ENST00000544272 C7orf43Q8WVR3 580 aa7.8□□□□□ -1.16
USP28-211ENST00000544272 NGLY1Q96IV0 654 aa7.8□□□□□ -1.16
USP28-211ENST00000544272 PHACTR1Q9C0D0 580 aa7.8□□□□□ -1.16
USP28-211ENST00000544272 ZNF232Q9UNY5 417 aa7.8□□□□□ -1.16
USP28-211ENST00000544272 HCN4Q9Y3Q4 1203 aa7.8□□□□□ -1.16
USP28-211ENST00000544272 CC2D2AQ9P2K1 1620 aa7.8□□□□□ -1.16
USP28-211ENST00000544272 TNFRSF10AO00220 468 aa7.79□□□□□ -1.16
USP28-211ENST00000544272 ETFBKMTQ8IXQ9 262 aa7.79□□□□□ -1.16
USP28-211ENST00000544272 DMRTB1Q96MA1 342 aa7.79□□□□□ -1.16
USP28-211ENST00000544272 PARP3Q9Y6F1 533 aa7.79□□□□□ -1.16
USP28-211ENST00000544272 SPINT1O43278 529 aa7.78□□□□□ -1.16
USP28-211ENST00000544272 DGKZQ13574 1117 aa7.78□□□□□ -1.16
USP28-211ENST00000544272 TMEM214Q6NUQ4 689 aaKnown RBP7.78□□□□□ -1.16
USP28-211ENST00000544272 GJD3Q8N144 294 aa7.78□□□□□ -1.16
USP28-211ENST00000544272 HPS1Q92902 700 aa7.78□□□□□ -1.16
USP28-211ENST00000544272 ALKBH8Q96BT7 664 aaKnown RBP7.78□□□□□ -1.16
USP28-211ENST00000544272 TSEN34Q9BSV6 310 aaKnown RBP7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms