RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-223ENST00000544268 PLEKHG2Q9H7P9 1386 aa18.53■□□□□ 0.56
CHFR-223ENST00000544268 BTBD11A6QL63 1104 aa18.52■□□□□ 0.56
CHFR-223ENST00000544268 KCNQ3O43525 872 aa18.52■□□□□ 0.56
CHFR-223ENST00000544268 NECTIN2Q92692 538 aa18.52■□□□□ 0.56
CHFR-223ENST00000544268 ADAMTS7Q9UKP4 1686 aa18.52■□□□□ 0.56
CHFR-223ENST00000544268 KDM6AO15550 1401 aaPredicted RBP18.52■□□□□ 0.56
CHFR-223ENST00000544268 IFNL2Q8IZJ0 200 aa18.52■□□□□ 0.55
CHFR-223ENST00000544268 KDM3BQ7LBC6 1761 aa18.52■□□□□ 0.55
CHFR-223ENST00000544268 COL14A1Q05707 1796 aaKnown RBP18.51■□□□□ 0.55
CHFR-223ENST00000544268 ESPNB1AK53 854 aa18.51■□□□□ 0.55
CHFR-223ENST00000544268 SLC4A2P04920 1241 aa18.51■□□□□ 0.55
CHFR-223ENST00000544268 GZF1Q9H116 711 aaPredicted RBP18.51■□□□□ 0.55
CHFR-223ENST00000544268 PARP4Q9UKK3 1724 aaKnown RBP18.5■□□□□ 0.55
CHFR-223ENST00000544268 ADAMTS2O95450 1211 aa18.5■□□□□ 0.55
CHFR-223ENST00000544268 RBM25P49756 843 aaKnown RBP18.5■□□□□ 0.55
CHFR-223ENST00000544268 EIF4A1P60842 406 aaKnown RBP18.5■□□□□ 0.55
CHFR-223ENST00000544268 SLC4A10Q6U841 1118 aa18.5■□□□□ 0.55
CHFR-223ENST00000544268 PLEKHM2Q8IWE5 1019 aa18.5■□□□□ 0.55
CHFR-223ENST00000544268 SCN11AQ9UI33 1791 aa18.49■□□□□ 0.55
CHFR-223ENST00000544268 IL2RBP14784 551 aa18.49■□□□□ 0.55
CHFR-223ENST00000544268 MCM4P33991 863 aa18.49■□□□□ 0.55
CHFR-223ENST00000544268 SIPA1L3O60292 1781 aaPredicted RBP18.49■□□□□ 0.55
CHFR-223ENST00000544268 ATP10DQ9P241 1426 aa18.49■□□□□ 0.55
CHFR-223ENST00000544268 INTS3Q68E01 1043 aaKnown RBP18.49■□□□□ 0.55
CHFR-223ENST00000544268 HSCBQ8IWL3 235 aa18.49■□□□□ 0.55
CHFR-223ENST00000544268 ZCRB1Q8TBF4 217 aaKnown RBP18.49■□□□□ 0.55
CHFR-223ENST00000544268 CEP85Q6P2H3 762 aa18.48■□□□□ 0.55
CHFR-223ENST00000544268 NUTM2BA6NNL0 878 aaPredicted RBP18.47■□□□□ 0.55
CHFR-223ENST00000544268 NUTM2EB1AL46 878 aaPredicted RBP18.47■□□□□ 0.55
CHFR-223ENST00000544268 NUTM2AQ8IVF1 878 aaPredicted RBP18.47■□□□□ 0.55
CHFR-223ENST00000544268 DCTPP1Q9H773 170 aa18.47■□□□□ 0.55
CHFR-223ENST00000544268 SLC52A2Q9HAB3 445 aa18.47■□□□□ 0.55
CHFR-223ENST00000544268 ISY1Q9ULR0 285 aaKnown RBP18.47■□□□□ 0.55
CHFR-223ENST00000544268 DCAF5Q96JK2 942 aa18.47■□□□□ 0.55
CHFR-223ENST00000544268 SOS1Q07889 1333 aaPredicted RBP18.46■□□□□ 0.55
CHFR-223ENST00000544268 CCDC30Q5VVM6 783 aa18.46■□□□□ 0.55
CHFR-223ENST00000544268 NFATC2IPQ8NCF5 419 aa18.46■□□□□ 0.55
CHFR-223ENST00000544268 PCDH11XQ9BZA7 1347 aa18.46■□□□□ 0.55
CHFR-223ENST00000544268 PCDH11YQ9BZA8 1340 aa18.46■□□□□ 0.55
CHFR-223ENST00000544268 STK31Q9BXU1 1019 aa18.45■□□□□ 0.54
CHFR-223ENST00000544268 HDGFL1Q5TGJ6 251 aa18.44■□□□□ 0.54
CHFR-223ENST00000544268 TSHZ3Q63HK5 1081 aa18.44■□□□□ 0.54
CHFR-223ENST00000544268 ANKRD44Q8N8A2 993 aa18.44■□□□□ 0.54
CHFR-223ENST00000544268 HSP90AB1P08238 724 aaKnown RBP18.44■□□□□ 0.54
CHFR-223ENST00000544268 CHMP5Q9NZZ3 219 aa18.44■□□□□ 0.54
CHFR-223ENST00000544268 PTPRCP08575 1304 aa18.44■□□□□ 0.54
CHFR-223ENST00000544268 SLC39A6Q13433 755 aa18.43■□□□□ 0.54
CHFR-223ENST00000544268 CHMP4BQ9H444 224 aaKnown RBP18.43■□□□□ 0.54
CHFR-223ENST00000544268 GRPEL1Q9HAV7 217 aa18.43■□□□□ 0.54
CHFR-223ENST00000544268 PLCH1Q4KWH8 1693 aa18.43■□□□□ 0.54
CHFR-223ENST00000544268 TRAK2O60296 914 aa18.43■□□□□ 0.54
CHFR-223ENST00000544268 EIF2S2P20042 333 aaKnown RBP18.43■□□□□ 0.54
CHFR-223ENST00000544268 DDX54Q8TDD1 881 aaKnown RBP18.43■□□□□ 0.54
CHFR-223ENST00000544268 SHANK3Q9BYB0 1731 aa18.43■□□□□ 0.54
CHFR-223ENST00000544268 ERBB4Q15303 1308 aa18.43■□□□□ 0.54
CHFR-223ENST00000544268 MRC1P22897 1456 aa18.42■□□□□ 0.54
CHFR-223ENST00000544268 HOXB7P09629 217 aa18.42■□□□□ 0.54
CHFR-223ENST00000544268 DDIT3P35638 169 aa18.42■□□□□ 0.54
CHFR-223ENST00000544268 PRDM4Q9UKN5 801 aa18.42■□□□□ 0.54
CHFR-223ENST00000544268 HEG1Q9ULI3 1381 aa18.41■□□□□ 0.54
CHFR-223ENST00000544268 ZNF790Q6PG37 636 aa18.41■□□□□ 0.54
CHFR-223ENST00000544268 GIGYF1O75420 1035 aaPredicted RBP18.41■□□□□ 0.54
CHFR-223ENST00000544268 TTC22Q5TAA0 569 aa18.41■□□□□ 0.54
CHFR-223ENST00000544268 PRAMEF22A3QJZ6 481 aa18.4■□□□□ 0.54
CHFR-223ENST00000544268 CDC45O75419 566 aa18.4■□□□□ 0.54
CHFR-223ENST00000544268 CABP4P57796 275 aa18.4■□□□□ 0.54
CHFR-223ENST00000544268 CACNA1FO60840 1977 aa18.4■□□□□ 0.54
CHFR-223ENST00000544268 FLIIQ13045 1269 aa18.4■□□□□ 0.54
CHFR-223ENST00000544268 SDSP20132 328 aa18.39■□□□□ 0.53
CHFR-223ENST00000544268 TRIM44Q96DX7 344 aaPredicted RBP18.39■□□□□ 0.53
CHFR-223ENST00000544268 DISP2A7MBM2 1401 aa18.39■□□□□ 0.53
CHFR-223ENST00000544268 NKX1-1Q15270 411 aaPredicted RBP18.39■□□□□ 0.53
CHFR-223ENST00000544268 SNX21Q969T3 373 aa18.39■□□□□ 0.53
CHFR-223ENST00000544268 EXOC6BQ9Y2D4 811 aa18.39■□□□□ 0.53
CHFR-223ENST00000544268 NRAPQ86VF7 1730 aa18.38■□□□□ 0.53
CHFR-223ENST00000544268 TNPO1Q92973 898 aaKnown RBP18.38■□□□□ 0.53
CHFR-223ENST00000544268 CHPF2Q9P2E5 772 aa18.38■□□□□ 0.53
CHFR-223ENST00000544268 FKBP5Q13451 457 aaPredicted RBP18.38■□□□□ 0.53
CHFR-223ENST00000544268 PHAXQ9H814 394 aaKnown RBP18.37■□□□□ 0.53
CHFR-223ENST00000544268 JCADQ9P266 1359 aa18.37■□□□□ 0.53
CHFR-223ENST00000544268 RPAP2Q8IXW5 612 aaPredicted RBP18.37■□□□□ 0.53
CHFR-223ENST00000544268 ANXA1P04083 346 aa18.36■□□□□ 0.53
CHFR-223ENST00000544268 ZNF496Q96IT1 587 aaPredicted RBP18.36■□□□□ 0.53
CHFR-223ENST00000544268 ERVV-2B6SEH9 535 aa18.35■□□□□ 0.53
CHFR-223ENST00000544268 PNMA6EA0A0J9YXQ4 647 aa18.35■□□□□ 0.53
CHFR-223ENST00000544268 TTC5Q8N0Z6 440 aa18.35■□□□□ 0.53
CHFR-223ENST00000544268 SLIT2O94813 1529 aa18.35■□□□□ 0.53
CHFR-223ENST00000544268 SPATA31A1Q5TZJ5 1347 aa18.35■□□□□ 0.53
CHFR-223ENST00000544268 CHMP4AQ9BY43 222 aa18.34■□□□□ 0.53
CHFR-223ENST00000544268 KIAA1211Q6ZU35 1233 aa18.34■□□□□ 0.53
CHFR-223ENST00000544268 C5P01031 1676 aa18.33■□□□□ 0.53
CHFR-223ENST00000544268 DDX11L8A8MPP1 907 aa18.33■□□□□ 0.53
CHFR-223ENST00000544268 K7ELQ4 463 aaPredicted RBP18.33■□□□□ 0.53
CHFR-223ENST00000544268 PROSER3Q2NL68 480 aa18.33■□□□□ 0.52
CHFR-223ENST00000544268 USP26Q9BXU7 913 aa18.33■□□□□ 0.52
CHFR-223ENST00000544268 DBF4Q9UBU7 674 aaPredicted RBP18.33■□□□□ 0.52
CHFR-223ENST00000544268 NWD2Q9ULI1 1742 aa18.33■□□□□ 0.52
CHFR-223ENST00000544268 TOGARAM1Q9Y4F4 1720 aa18.33■□□□□ 0.52
CHFR-223ENST00000544268 WNK3Q9BYP7 1800 aa18.33■□□□□ 0.52
CHFR-223ENST00000544268 SSFA2P28290 1259 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms