RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 ZNF287Q9HBT7 754 aa9.16□□□□□ -0.94
VPS13D-211ENST00000543710 ARHGEF10O15013 1369 aa9.16□□□□□ -0.94
VPS13D-211ENST00000543710 CAPN15O75808 1086 aa9.16□□□□□ -0.94
VPS13D-211ENST00000543710 TWISTNBQ3B726 338 aaPredicted RBP9.16□□□□□ -0.94
VPS13D-211ENST00000543710 PPFIBP1Q86W92 1011 aa9.16□□□□□ -0.94
VPS13D-211ENST00000543710 CCDC148Q8NFR7 591 aa9.16□□□□□ -0.94
VPS13D-211ENST00000543710 CDK5RAP3Q96JB5 506 aa9.16□□□□□ -0.94
VPS13D-211ENST00000543710 INCENPQ9NQS7 918 aa9.16□□□□□ -0.94
VPS13D-211ENST00000543710 SLC5A4Q9NY91 659 aa9.16□□□□□ -0.94
VPS13D-211ENST00000543710 PPP4R3BQ5MIZ7 849 aa9.16□□□□□ -0.94
VPS13D-211ENST00000543710 JAKMIP3Q5VZ66 844 aa9.16□□□□□ -0.94
VPS13D-211ENST00000543710 SETDB2Q96T68 719 aa9.16□□□□□ -0.94
VPS13D-211ENST00000543710 GRPEL1Q9HAV7 217 aa9.16□□□□□ -0.94
VPS13D-211ENST00000543710 FOXD4L1Q9NU39 408 aa9.16□□□□□ -0.94
VPS13D-211ENST00000543710 NBPF6Q5VWK0 638 aa9.15□□□□□ -0.94
VPS13D-211ENST00000543710 NBPF5PQ86XG9 351 aaPredicted RBP9.15□□□□□ -0.94
VPS13D-211ENST00000543710 NBPF4Q96M43 638 aa9.15□□□□□ -0.94
VPS13D-211ENST00000543710 CDK13Q14004 1512 aaKnown RBP9.15□□□□□ -0.94
VPS13D-211ENST00000543710 VPS37CA5D8V6 355 aaPredicted RBP9.15□□□□□ -0.94
VPS13D-211ENST00000543710 SLFN5Q08AF3 891 aa9.15□□□□□ -0.94
VPS13D-211ENST00000543710 HOOK3Q86VS8 718 aa9.15□□□□□ -0.94
VPS13D-211ENST00000543710 CCNL1Q9UK58 526 aaPredicted RBP9.15□□□□□ -0.94
VPS13D-211ENST00000543710 ODF2Q5BJF6 829 aa9.15□□□□□ -0.94
VPS13D-211ENST00000543710 AKAP2Q9Y2D5 859 aa9.15□□□□□ -0.94
VPS13D-211ENST00000543710 SYCP1Q15431 976 aa9.15□□□□□ -0.95
VPS13D-211ENST00000543710 CCDC178Q5BJE1 867 aa9.15□□□□□ -0.95
VPS13D-211ENST00000543710 CEP57L1Q8IYX8 460 aa9.14□□□□□ -0.95
VPS13D-211ENST00000543710 ZNF397Q8NF99 534 aaPredicted RBP9.14□□□□□ -0.95
VPS13D-211ENST00000543710 ZNF592Q92610 1267 aa9.14□□□□□ -0.95
VPS13D-211ENST00000543710 LRRC27Q9C0I9 530 aa9.14□□□□□ -0.95
VPS13D-211ENST00000543710 CCDC61Q9Y6R9 512 aa9.14□□□□□ -0.95
VPS13D-211ENST00000543710 NSD3Q9BZ95 1437 aa9.14□□□□□ -0.95
VPS13D-211ENST00000543710 GLRX3O76003 335 aaKnown RBP9.14□□□□□ -0.95
VPS13D-211ENST00000543710 KIAA0754O94854 1291 aa9.14□□□□□ -0.95
VPS13D-211ENST00000543710 APPP05067 770 aa9.14□□□□□ -0.95
VPS13D-211ENST00000543710 CA8P35219 290 aa9.14□□□□□ -0.95
VPS13D-211ENST00000543710 GSDMDP57764 484 aa9.14□□□□□ -0.95
VPS13D-211ENST00000543710 MICALCLQ6ZW33 695 aa9.14□□□□□ -0.95
VPS13D-211ENST00000543710 TNMDQ9H2S6 317 aa9.14□□□□□ -0.95
VPS13D-211ENST00000543710 KIF20AO95235 890 aa9.14□□□□□ -0.95
VPS13D-211ENST00000543710 CCDC183Q5T5S1 534 aa9.14□□□□□ -0.95
VPS13D-211ENST00000543710 CCDC69A6NI79 296 aa9.14□□□□□ -0.95
VPS13D-211ENST00000543710 NFE2L2Q16236 605 aa9.14□□□□□ -0.95
VPS13D-211ENST00000543710 DRC1Q96MC2 740 aa9.14□□□□□ -0.95
VPS13D-211ENST00000543710 FEZ1Q99689 392 aa9.14□□□□□ -0.95
VPS13D-211ENST00000543710 CCAR2Q8N163 923 aaKnown RBP9.13□□□□□ -0.95
VPS13D-211ENST00000543710 EHMT1Q9H9B1 1298 aa9.13□□□□□ -0.95
VPS13D-211ENST00000543710 PODXL2Q9NZ53 605 aa9.13□□□□□ -0.95
VPS13D-211ENST00000543710 SPATA31A6Q5VVP1 1343 aa9.13□□□□□ -0.95
VPS13D-211ENST00000543710 ABCA5Q8WWZ7 1642 aa9.13□□□□□ -0.95
VPS13D-211ENST00000543710 STK38Q15208 465 aa9.13□□□□□ -0.95
VPS13D-211ENST00000543710 FAM98CQ17RN3 349 aaKnown RBP9.13□□□□□ -0.95
VPS13D-211ENST00000543710 NIM1KQ8IY84 436 aa9.13□□□□□ -0.95
VPS13D-211ENST00000543710 SPC25Q9HBM1 224 aa9.13□□□□□ -0.95
VPS13D-211ENST00000543710 NOB1Q9ULX3 412 aaKnown RBP9.13□□□□□ -0.95
VPS13D-211ENST00000543710 ECE1P42892 770 aa9.13□□□□□ -0.95
VPS13D-211ENST00000543710 HSP90AB2PQ58FF8 381 aa9.13□□□□□ -0.95
VPS13D-211ENST00000543710 CT47A1Q5JQC4 288 aaPredicted RBP9.13□□□□□ -0.95
VPS13D-211ENST00000543710 TCP11L2Q8N4U5 519 aa9.13□□□□□ -0.95
VPS13D-211ENST00000543710 TRIM5Q9C035 493 aa9.13□□□□□ -0.95
VPS13D-211ENST00000543710 CCDC112Q8NEF3 446 aa9.13□□□□□ -0.95
VPS13D-211ENST00000543710 SCLT1Q96NL6 688 aa9.13□□□□□ -0.95
VPS13D-211ENST00000543710 CABP5Q9NP86 173 aa9.13□□□□□ -0.95
VPS13D-211ENST00000543710 WDR70Q9NW82 654 aa9.13□□□□□ -0.95
VPS13D-211ENST00000543710 ADAMTS8Q9UP79 889 aa9.13□□□□□ -0.95
VPS13D-211ENST00000543710 CAVIN4Q5BKX8 364 aa9.12□□□□□ -0.95
VPS13D-211ENST00000543710 UTP14AQ9BVJ6 771 aaKnown RBP9.12□□□□□ -0.95
VPS13D-211ENST00000543710 PDRG1Q9NUG6 133 aa9.12□□□□□ -0.95
VPS13D-211ENST00000543710 ZNF608Q9ULD9 1512 aaPredicted RBP9.12□□□□□ -0.95
VPS13D-211ENST00000543710 ADGRL2O95490 1459 aa9.12□□□□□ -0.95
VPS13D-211ENST00000543710 PLIN1O60240 522 aa9.12□□□□□ -0.95
VPS13D-211ENST00000543710 CREBRFQ8IUR6 639 aa9.12□□□□□ -0.95
VPS13D-211ENST00000543710 PIK3C2GO75747 1445 aa9.12□□□□□ -0.95
VPS13D-211ENST00000543710 WASHC4Q2M389 1173 aa9.12□□□□□ -0.95
VPS13D-211ENST00000543710 KANK3Q6NY19 840 aa9.12□□□□□ -0.95
VPS13D-211ENST00000543710 ARHGAP45Q92619 1136 aa9.12□□□□□ -0.95
VPS13D-211ENST00000543710 JCADQ9P266 1359 aa9.12□□□□□ -0.95
VPS13D-211ENST00000543710 ATP2B2Q01814 1243 aa9.12□□□□□ -0.95
VPS13D-211ENST00000543710 DHX37Q8IY37 1157 aaKnown RBP9.12□□□□□ -0.95
VPS13D-211ENST00000543710 DCPSQ96C86 337 aaKnown RBP9.12□□□□□ -0.95
VPS13D-211ENST00000543710 BTG4Q9NY30 223 aa9.12□□□□□ -0.95
VPS13D-211ENST00000543710 HMG20BQ9P0W2 317 aa9.12□□□□□ -0.95
VPS13D-211ENST00000543710 ARHGEF5Q12774 1597 aa9.11□□□□□ -0.95
VPS13D-211ENST00000543710 LDHCP07864 332 aa9.11□□□□□ -0.95
VPS13D-211ENST00000543710 IL2RBP14784 551 aa9.11□□□□□ -0.95
VPS13D-211ENST00000543710 ATP6V1AP38606 617 aa9.11□□□□□ -0.95
VPS13D-211ENST00000543710 ILDR1Q86SU0 546 aaPredicted RBP9.11□□□□□ -0.95
VPS13D-211ENST00000543710 NUP62CLQ9H1M0 184 aa9.11□□□□□ -0.95
VPS13D-211ENST00000543710 IQCA1LA6NCM1 817 aa9.11□□□□□ -0.95
VPS13D-211ENST00000543710 FAM114A1Q8IWE2 563 aa9.11□□□□□ -0.95
VPS13D-211ENST00000543710 CDC5LQ99459 802 aaKnown RBP9.11□□□□□ -0.95
VPS13D-211ENST00000543710 SDF4Q9BRK5 362 aa9.11□□□□□ -0.95
VPS13D-211ENST00000543710 SCAND2PQ9GZW5 306 aaPredicted RBP9.11□□□□□ -0.95
VPS13D-211ENST00000543710 ANO10Q9NW15 660 aa9.11□□□□□ -0.95
VPS13D-211ENST00000543710 IVNS1ABPQ9Y6Y0 642 aa9.11□□□□□ -0.95
VPS13D-211ENST00000543710 KDM5AP29375 1690 aaKnown RBP9.11□□□□□ -0.95
VPS13D-211ENST00000543710 SHROOM2Q13796 1616 aa9.11□□□□□ -0.95
VPS13D-211ENST00000543710 POTEJP0CG39 1038 aa9.11□□□□□ -0.95
VPS13D-211ENST00000543710 AIMP1Q12904 312 aaKnown RBP9.11□□□□□ -0.95
VPS13D-211ENST00000543710 TPTE2Q6XPS3 522 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms