RNA–Protein interactions for RNA: ENST00000543658.5

DDB1-223, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 571 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-223	ENST00000543658	CCDC125	Q86Z20	511 aa		15.24	■□□□□ 0.03
DDB1-223	ENST00000543658	DNAJC10	Q8IXB1	793 aa		15.24	■□□□□ 0.03
DDB1-223	ENST00000543658	RREB1	Q92766	1687 aa		15.24	■□□□□ 0.03
DDB1-223	ENST00000543658	ERBB4	Q15303	1308 aa		15.23	■□□□□ 0.03
DDB1-223	ENST00000543658	PRAMEF22	A3QJZ6	481 aa		15.23	■□□□□ 0.03
DDB1-223	ENST00000543658	PLSCR1	O15162	318 aa		15.23	■□□□□ 0.03
DDB1-223	ENST00000543658	CANX	P27824	592 aa	Known RBP	15.23	■□□□□ 0.03
DDB1-223	ENST00000543658	EP400	Q96L91	3159 aa		15.22	■□□□□ 0.03
DDB1-223	ENST00000543658	KIF16B	Q96L93	1317 aa		15.22	■□□□□ 0.03
DDB1-223	ENST00000543658	MYH14	Q7Z406	1995 aa	Known RBP	15.22	■□□□□ 0.03
DDB1-223	ENST00000543658	RARS	P54136	660 aa	Known RBP	15.22	■□□□□ 0.03
DDB1-223	ENST00000543658	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	15.22	■□□□□ 0.03
DDB1-223	ENST00000543658	BCL2L13	Q9BXK5	485 aa		15.22	■□□□□ 0.03
DDB1-223	ENST00000543658	DBF4	Q9UBU7	674 aa	Predicted RBP	15.22	■□□□□ 0.03
DDB1-223	ENST00000543658	USP16	Q9Y5T5	823 aa		15.22	■□□□□ 0.03
DDB1-223	ENST00000543658	TCERG1	O14776	1098 aa	Known RBP	15.21	■□□□□ 0.03
DDB1-223	ENST00000543658	CHPF2	Q9P2E5	772 aa		15.21	■□□□□ 0.03
DDB1-223	ENST00000543658	NUP188	Q5SRE5	1749 aa		15.2	■□□□□ 0.02
DDB1-223	ENST00000543658	MYL6B	P14649	208 aa		15.2	■□□□□ 0.02
DDB1-223	ENST00000543658	TXNRD1	Q16881	649 aa		15.2	■□□□□ 0.02
DDB1-223	ENST00000543658	SSH1	Q8WYL5	1049 aa		15.2	■□□□□ 0.02
DDB1-223	ENST00000543658	SLC4A9	Q96Q91	983 aa		15.2	■□□□□ 0.02
DDB1-223	ENST00000543658	ZNF330	Q9Y3S2	320 aa	Predicted RBP	15.2	■□□□□ 0.02
DDB1-223	ENST00000543658	UBR3	Q6ZT12	1888 aa		15.19	■□□□□ 0.02
DDB1-223	ENST00000543658	SLC4A2	P04920	1241 aa		15.19	■□□□□ 0.02
DDB1-223	ENST00000543658	CYP19A1	P11511	503 aa	Predicted RBP	15.19	■□□□□ 0.02
DDB1-223	ENST00000543658	CRKL	P46109	303 aa	Known RBP	15.19	■□□□□ 0.02
DDB1-223	ENST00000543658	ITPK1	Q13572	414 aa		15.19	■□□□□ 0.02
DDB1-223	ENST00000543658	AK7	Q96M32	723 aa		15.19	■□□□□ 0.02
DDB1-223	ENST00000543658	DDX21	Q9NR30	783 aa	Known RBP eCLIP	15.19	■□□□□ 0.02
DDB1-223	ENST00000543658	CCDC87	Q9NVE4	849 aa		15.19	■□□□□ 0.02
DDB1-223	ENST00000543658	HYPK	Q9NX55	129 aa		15.19	■□□□□ 0.02
DDB1-223	ENST00000543658	CNTNAP4	Q9C0A0	1308 aa		15.18	■□□□□ 0.02
DDB1-223	ENST00000543658	KCNQ4	P56696	695 aa		15.18	■□□□□ 0.02
DDB1-223	ENST00000543658	EN1	Q05925	392 aa	Predicted RBP	15.18	■□□□□ 0.02
DDB1-223	ENST00000543658	LINC00116	Q8NCU8	138 aa		15.18	■□□□□ 0.02
DDB1-223	ENST00000543658	FRAT1	Q92837	279 aa	Predicted RBP	15.18	■□□□□ 0.02
DDB1-223	ENST00000543658	ARFGEF2	Q9Y6D5	1785 aa		15.18	■□□□□ 0.02
DDB1-223	ENST00000543658	TUBGCP6	Q96RT7	1819 aa		15.17	■□□□□ 0.02
DDB1-223	ENST00000543658	IPO8	O15397	1037 aa	Known RBP	15.17	■□□□□ 0.02
DDB1-223	ENST00000543658	BCAR3	O75815	825 aa		15.17	■□□□□ 0.02
DDB1-223	ENST00000543658	A1BG	P04217	495 aa		15.17	■□□□□ 0.02
DDB1-223	ENST00000543658	MRPL50	Q8N5N7	158 aa	Known RBP	15.17	■□□□□ 0.02
DDB1-223	ENST00000543658	AFDN	P55196	1824 aa	Known RBP	15.17	■□□□□ 0.02
DDB1-223	ENST00000543658	DDX58	O95786	925 aa	Known RBP	15.16	■□□□□ 0.02
DDB1-223	ENST00000543658	ANXA1	P04083	346 aa		15.16	■□□□□ 0.02
DDB1-223	ENST00000543658	PIP4K2A	P48426	406 aa	Predicted RBP	15.16	■□□□□ 0.02
DDB1-223	ENST00000543658	EZH2	Q15910	746 aa	Known RBP	15.16	■□□□□ 0.02
DDB1-223	ENST00000543658	RC3H1	Q5TC82	1133 aa	Known RBP	15.16	■□□□□ 0.02
DDB1-223	ENST00000543658	ZBTB1	Q9Y2K1	713 aa		15.16	■□□□□ 0.02
DDB1-223	ENST00000543658	C4A	P0C0L4	1744 aa		15.16	■□□□□ 0.02
DDB1-223	ENST00000543658	QSER1	Q2KHR3	1735 aa		15.16	■□□□□ 0.02
DDB1-223	ENST00000543658	BCOR	Q6W2J9	1755 aa		15.16	■□□□□ 0.02
DDB1-223	ENST00000543658	N4BP2	Q86UW6	1770 aa	Predicted RBP	15.16	■□□□□ 0.02
DDB1-223	ENST00000543658	PTPRC	P08575	1304 aa		15.16	■□□□□ 0.02
DDB1-223	ENST00000543658	GNPAT	O15228	680 aa		15.15	■□□□□ 0.02
DDB1-223	ENST00000543658	IL6ST	P40189	918 aa	Predicted RBP	15.15	■□□□□ 0.02
DDB1-223	ENST00000543658	BRPF1	P55201	1214 aa	Predicted RBP	15.15	■□□□□ 0.02
DDB1-223	ENST00000543658	AIMP1	Q12904	312 aa	Known RBP	15.15	■□□□□ 0.02
DDB1-223	ENST00000543658	FLII	Q13045	1269 aa		15.15	■□□□□ 0.02
DDB1-223	ENST00000543658	FKBP5	Q13451	457 aa	Predicted RBP	15.15	■□□□□ 0.02
DDB1-223	ENST00000543658	ZKSCAN2	Q63HK3	967 aa		15.15	■□□□□ 0.02
DDB1-223	ENST00000543658	KIF6	Q6ZMV9	814 aa		15.15	■□□□□ 0.02
DDB1-223	ENST00000543658	DEFB132	Q7Z7B7	95 aa		15.15	■□□□□ 0.02
DDB1-223	ENST00000543658	ARX	Q96QS3	562 aa		15.15	■□□□□ 0.02
DDB1-223	ENST00000543658	LRRC4B	Q9NT99	713 aa		15.15	■□□□□ 0.02
DDB1-223	ENST00000543658	RTCB	Q9Y3I0	505 aa	Known RBP	15.15	■□□□□ 0.02
DDB1-223	ENST00000543658	SUPT16H	Q9Y5B9	1047 aa	Known RBP	15.15	■□□□□ 0.02
DDB1-223	ENST00000543658	ANKRD36C	Q5JPF3	1778 aa		15.15	■□□□□ 0.02
DDB1-223	ENST00000543658	NUP98	P52948	1817 aa		15.15	■□□□□ 0.02
DDB1-223	ENST00000543658	COL15A1	P39059	1388 aa		15.14	■□□□□ 0.01
DDB1-223	ENST00000543658		A0A087WZG4	1122 aa		15.14	■□□□□ 0.01
DDB1-223	ENST00000543658	MS4A1	P11836	297 aa		15.14	■□□□□ 0.01
DDB1-223	ENST00000543658	PROSER3	Q2NL68	480 aa		15.14	■□□□□ 0.01
DDB1-223	ENST00000543658	UPF1	Q92900	1129 aa	Known RBP eCLIP	15.14	■□□□□ 0.01
DDB1-223	ENST00000543658	CAMKK2	Q96RR4	588 aa		15.14	■□□□□ 0.01
DDB1-223	ENST00000543658	API5	Q9BZZ5	524 aa	Known RBP	15.14	■□□□□ 0.01
DDB1-223	ENST00000543658	NOB1	Q9ULX3	412 aa	Known RBP	15.14	■□□□□ 0.01
DDB1-223	ENST00000543658	SCN7A	Q01118	1682 aa		15.13	■□□□□ 0.01
DDB1-223	ENST00000543658	RRP1	P56182	461 aa	Known RBP	15.13	■□□□□ 0.01
DDB1-223	ENST00000543658	PDIA6	Q15084	440 aa		15.13	■□□□□ 0.01
DDB1-223	ENST00000543658	INTS5	Q6P9B9	1019 aa	Known RBP	15.13	■□□□□ 0.01
DDB1-223	ENST00000543658	FTSJ3	Q8IY81	847 aa	Known RBP	15.13	■□□□□ 0.01
DDB1-223	ENST00000543658	XAGE3	Q8WTP9	111 aa		15.13	■□□□□ 0.01
DDB1-223	ENST00000543658	PHAX	Q9H814	394 aa	Known RBP	15.13	■□□□□ 0.01
DDB1-223	ENST00000543658	NBPF26	B4DH59	902 aa		15.12	■□□□□ 0.01
DDB1-223	ENST00000543658	NBPF14	Q5TI25	921 aa		15.12	■□□□□ 0.01
DDB1-223	ENST00000543658	NBPF10	Q6P3W6	841 aa	Known RBP	15.12	■□□□□ 0.01
DDB1-223	ENST00000543658	COPS6	Q7L5N1	327 aa		15.12	■□□□□ 0.01
DDB1-223	ENST00000543658	RIC3	Q7Z5B4	369 aa		15.12	■□□□□ 0.01
DDB1-223	ENST00000543658	NBPF15	Q8N660	670 aa		15.12	■□□□□ 0.01
DDB1-223	ENST00000543658	STK32B	Q9NY57	414 aa		15.12	■□□□□ 0.01
DDB1-223	ENST00000543658	RPS6KA4	O75676	772 aa		15.11	■□□□□ 0.01
DDB1-223	ENST00000543658	PHF14	O94880	888 aa		15.11	■□□□□ 0.01
DDB1-223	ENST00000543658	NEFL	P07196	543 aa		15.11	■□□□□ 0.01
DDB1-223	ENST00000543658	ATF7IP	Q6VMQ6	1270 aa		15.11	■□□□□ 0.01
DDB1-223	ENST00000543658	G2E3	Q7L622	706 aa		15.11	■□□□□ 0.01
DDB1-223	ENST00000543658	DZIP3	Q86Y13	1208 aa	Known RBP	15.11	■□□□□ 0.01
DDB1-223	ENST00000543658	PROM2	Q8N271	834 aa		15.11	■□□□□ 0.01
DDB1-223	ENST00000543658	ARHGAP45	Q92619	1136 aa		15.11	■□□□□ 0.01

Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms