RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 FOXO3O43524 673 aa16.63■□□□□ 0.25
VPS33A-208ENST00000543633 SSH3Q8TE77 659 aa16.63■□□□□ 0.25
VPS33A-208ENST00000543633 EYA1Q99502 592 aa16.63■□□□□ 0.25
VPS33A-208ENST00000543633 PDCL3Q9H2J4 239 aa16.63■□□□□ 0.25
VPS33A-208ENST00000543633 TSPY26PQ9H489 355 aa16.63■□□□□ 0.25
VPS33A-208ENST00000543633 GNAT3A8MTJ3 354 aa16.62■□□□□ 0.25
VPS33A-208ENST00000543633 HSPA4P34932 840 aa16.62■□□□□ 0.25
VPS33A-208ENST00000543633 HSPA2P54652 639 aa16.62■□□□□ 0.25
VPS33A-208ENST00000543633 FAM184AQ8NB25 1140 aa16.62■□□□□ 0.25
VPS33A-208ENST00000543633 CHMP4AQ9BY43 222 aa16.62■□□□□ 0.25
VPS33A-208ENST00000543633 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.62■□□□□ 0.25
VPS33A-208ENST00000543633 PALD1Q9ULE6 856 aa16.62■□□□□ 0.25
VPS33A-208ENST00000543633 MAP7D2Q96T17 732 aa16.62■□□□□ 0.25
VPS33A-208ENST00000543633 MIS18AQ9NYP9 233 aa16.62■□□□□ 0.25
VPS33A-208ENST00000543633 RGPD8O14715 1765 aaPredicted RBP16.61■□□□□ 0.25
VPS33A-208ENST00000543633 KDM3BQ7LBC6 1761 aa16.61■□□□□ 0.25
VPS33A-208ENST00000543633 TRIM6-TRIM34B2RNG4 842 aa16.61■□□□□ 0.25
VPS33A-208ENST00000543633 UVSSAQ2YD98 709 aa16.61■□□□□ 0.25
VPS33A-208ENST00000543633 RAD50Q92878 1312 aa16.61■□□□□ 0.25
VPS33A-208ENST00000543633 UBTFL1P0CB47 393 aaPredicted RBP16.6■□□□□ 0.25
VPS33A-208ENST00000543633 AMPHP49418 695 aa16.6■□□□□ 0.25
VPS33A-208ENST00000543633 POLA2Q14181 598 aa16.6■□□□□ 0.25
VPS33A-208ENST00000543633 RILPL2Q969X0 211 aa16.6■□□□□ 0.25
VPS33A-208ENST00000543633 LRRFIP2Q9Y608 721 aaKnown RBP16.6■□□□□ 0.25
VPS33A-208ENST00000543633 NSFL1CQ9UNZ2 370 aaKnown RBP16.6■□□□□ 0.25
VPS33A-208ENST00000543633 HOXB7P09629 217 aa16.59■□□□□ 0.25
VPS33A-208ENST00000543633 USP42Q9H9J4 1324 aaKnown RBP16.59■□□□□ 0.25
VPS33A-208ENST00000543633 RPAP1Q9BWH6 1393 aaPredicted RBP16.59■□□□□ 0.25
VPS33A-208ENST00000543633 STRCQ7RTU9 1775 aa16.58■□□□□ 0.25
VPS33A-208ENST00000543633 NUTM2FA1L443 756 aa16.58■□□□□ 0.25
VPS33A-208ENST00000543633 LETM1O95202 739 aaPredicted RBP16.58■□□□□ 0.25
VPS33A-208ENST00000543633 USP44Q9H0E7 712 aa16.58■□□□□ 0.25
VPS33A-208ENST00000543633 TAF7Q15545 349 aaPredicted RBP16.58■□□□□ 0.24
VPS33A-208ENST00000543633 TSHZ3Q63HK5 1081 aa16.58■□□□□ 0.24
VPS33A-208ENST00000543633 HSP90AB4PQ58FF6 505 aa16.57■□□□□ 0.24
VPS33A-208ENST00000543633 ADGRL3Q9HAR2 1447 aa16.57■□□□□ 0.24
VPS33A-208ENST00000543633 SGSM2O43147 1006 aa16.57■□□□□ 0.24
VPS33A-208ENST00000543633 KIF1BPQ96EK5 621 aa16.57■□□□□ 0.24
VPS33A-208ENST00000543633 RBM33Q96EV2 1170 aaKnown RBP16.57■□□□□ 0.24
VPS33A-208ENST00000543633 MTERF4Q7Z6M4 381 aaKnown RBP16.56■□□□□ 0.24
VPS33A-208ENST00000543633 PI4K2BQ8TCG2 481 aa16.56■□□□□ 0.24
VPS33A-208ENST00000543633 TTC14Q96N46 770 aa16.56■□□□□ 0.24
VPS33A-208ENST00000543633 LMO7Q8WWI1 1683 aa16.56■□□□□ 0.24
VPS33A-208ENST00000543633 CEMIPQ8WUJ3 1361 aa16.56■□□□□ 0.24
VPS33A-208ENST00000543633 STRCP1A6NGW2 1772 aa16.56■□□□□ 0.24
VPS33A-208ENST00000543633 PHRF1Q9P1Y6 1649 aaKnown RBP16.55■□□□□ 0.24
VPS33A-208ENST00000543633 CCDC183Q5T5S1 534 aa16.55■□□□□ 0.24
VPS33A-208ENST00000543633 UNC5CLQ8IV45 518 aa16.55■□□□□ 0.24
VPS33A-208ENST00000543633 CNTROBQ8N137 903 aa16.55■□□□□ 0.24
VPS33A-208ENST00000543633 ATP6V1DQ9Y5K8 247 aa16.55■□□□□ 0.24
VPS33A-208ENST00000543633 HOXC9P31274 260 aa16.55■□□□□ 0.24
VPS33A-208ENST00000543633 NGDNQ8NEJ9 315 aaKnown RBP16.55■□□□□ 0.24
VPS33A-208ENST00000543633 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.55■□□□□ 0.24
VPS33A-208ENST00000543633 TTC41PQ6P2S7 1318 aa16.55■□□□□ 0.24
VPS33A-208ENST00000543633 RHPN1Q8TCX5 695 aa16.54■□□□□ 0.24
VPS33A-208ENST00000543633 LTN1O94822 1766 aa16.54■□□□□ 0.24
VPS33A-208ENST00000543633 DYNC1I1O14576 645 aa16.53■□□□□ 0.24
VPS33A-208ENST00000543633 HDGFL1Q5TGJ6 251 aa16.53■□□□□ 0.24
VPS33A-208ENST00000543633 FOXD4L5Q5VV16 416 aaPredicted RBP16.53■□□□□ 0.24
VPS33A-208ENST00000543633 SASS6Q6UVJ0 657 aa16.53■□□□□ 0.24
VPS33A-208ENST00000543633 IL17REQ8NFR9 667 aa16.53■□□□□ 0.24
VPS33A-208ENST00000543633 FOXD4L4Q8WXT5 416 aaPredicted RBP16.53■□□□□ 0.24
VPS33A-208ENST00000543633 UPF3BQ9BZI7 483 aaKnown RBP16.53■□□□□ 0.24
VPS33A-208ENST00000543633 R3HCC1Q9Y3T6 440 aaKnown RBP16.53■□□□□ 0.24
VPS33A-208ENST00000543633 TCHHQ07283 1943 aa16.53■□□□□ 0.24
VPS33A-208ENST00000543633 ZSCAN22P10073 491 aaPredicted RBP16.53■□□□□ 0.24
VPS33A-208ENST00000543633 PDIA4P13667 645 aaKnown RBP16.53■□□□□ 0.24
VPS33A-208ENST00000543633 USP48Q86UV5 1035 aa16.53■□□□□ 0.24
VPS33A-208ENST00000543633 CHAMP1Q96JM3 812 aa16.53■□□□□ 0.24
VPS33A-208ENST00000543633 LSG1Q9H089 658 aaKnown RBP16.53■□□□□ 0.24
VPS33A-208ENST00000543633 SNX14Q9Y5W7 946 aa16.53■□□□□ 0.24
VPS33A-208ENST00000543633 UBE2HP62256 183 aa16.52■□□□□ 0.24
VPS33A-208ENST00000543633 XPCQ01831 940 aaPredicted RBP16.52■□□□□ 0.24
VPS33A-208ENST00000543633 KIAA2012Q0VF49 1180 aa16.52■□□□□ 0.24
VPS33A-208ENST00000543633 PPP1R42Q7Z4L9 355 aa16.52■□□□□ 0.24
VPS33A-208ENST00000543633 LIMCH1Q9UPQ0 1083 aa16.52■□□□□ 0.24
VPS33A-208ENST00000543633 SOX12O15370 315 aa16.52■□□□□ 0.23
VPS33A-208ENST00000543633 RUFY2Q8WXA3 655 aa16.52■□□□□ 0.23
VPS33A-208ENST00000543633 OVOS2A0A0G2JMS6 1433 aa16.51■□□□□ 0.23
VPS33A-208ENST00000543633 SURF6O75683 361 aaKnown RBP16.51■□□□□ 0.23
VPS33A-208ENST00000543633 MTX1Q13505 466 aa16.51■□□□□ 0.23
VPS33A-208ENST00000543633 TM6SF1Q9BZW5 370 aa16.51■□□□□ 0.23
VPS33A-208ENST00000543633 GLRX3O76003 335 aaKnown RBP16.5■□□□□ 0.23
VPS33A-208ENST00000543633 PTMAP06454 111 aaKnown RBP16.5■□□□□ 0.23
VPS33A-208ENST00000543633 KCNB2Q92953 911 aa16.5■□□□□ 0.23
VPS33A-208ENST00000543633 IL25Q9H293 177 aa16.5■□□□□ 0.23
VPS33A-208ENST00000543633 IL1RAPL2Q9NP60 686 aa16.5■□□□□ 0.23
VPS33A-208ENST00000543633 UQCRHLA0A096LP55 91 aa16.5■□□□□ 0.23
VPS33A-208ENST00000543633 UQCRHP07919 91 aa16.5■□□□□ 0.23
VPS33A-208ENST00000543633 NOL8Q76FK4 1167 aaKnown RBP16.5■□□□□ 0.23
VPS33A-208ENST00000543633 RNF214Q8ND24 703 aa16.5■□□□□ 0.23
VPS33A-208ENST00000543633 ZSCAN31Q96LW9 406 aaPredicted RBP16.5■□□□□ 0.23
VPS33A-208ENST00000543633 SH2B1Q9NRF2 756 aaPredicted RBP16.5■□□□□ 0.23
VPS33A-208ENST00000543633 HDAC5Q9UQL6 1122 aa16.5■□□□□ 0.23
VPS33A-208ENST00000543633 NCAPD2Q15021 1401 aa16.5■□□□□ 0.23
VPS33A-208ENST00000543633 STX6O43752 255 aa16.49■□□□□ 0.23
VPS33A-208ENST00000543633 GADD45BO75293 160 aaPredicted RBP16.49■□□□□ 0.23
VPS33A-208ENST00000543633 NLRP6P59044 892 aa16.49■□□□□ 0.23
VPS33A-208ENST00000543633 PROSER2Q86WR7 435 aaPredicted RBP16.49■□□□□ 0.23
VPS33A-208ENST00000543633 NUTM1Q86Y26 1132 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms