RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 KIAA1107Q9UPP5 1409 aa22.31■■□□□ 1.16
HDAC4-215ENST00000543185 TTC31Q49AM3 519 aaPredicted RBP22.31■■□□□ 1.16
HDAC4-215ENST00000543185 BCCIPQ9P287 314 aaKnown RBP eCLIP22.31■■□□□ 1.16
HDAC4-215ENST00000543185 FBF1Q8TES7 1133 aa22.31■■□□□ 1.16
HDAC4-215ENST00000543185 CTAGE9A4FU28 777 aa22.3■■□□□ 1.16
HDAC4-215ENST00000543185 C8orf76Q96K31 380 aa22.3■■□□□ 1.16
HDAC4-215ENST00000543185 KIF4AO95239 1232 aa22.3■■□□□ 1.16
HDAC4-215ENST00000543185 JADE2Q9NQC1 790 aa22.3■■□□□ 1.16
HDAC4-215ENST00000543185 CEP83Q9Y592 693 aa22.3■■□□□ 1.16
HDAC4-215ENST00000543185 MATR3P43243 847 aaKnown RBP eCLIP22.3■■□□□ 1.162e-6■■■■□ 20.1
HDAC4-215ENST00000543185 DNAJC21Q5F1R6 531 aaKnown RBP22.3■■□□□ 1.16
HDAC4-215ENST00000543185 ZMYND15Q9H091 742 aa22.3■■□□□ 1.16
HDAC4-215ENST00000543185 A0A087WZG4 1122 aa22.3■■□□□ 1.16
HDAC4-215ENST00000543185 PRKAR2BP31323 418 aa22.3■■□□□ 1.16
HDAC4-215ENST00000543185 EBAG9O00559 213 aa22.29■■□□□ 1.16
HDAC4-215ENST00000543185 MSH5O43196 834 aa22.29■■□□□ 1.16
HDAC4-215ENST00000543185 TTC21AQ8NDW8 1320 aa22.29■■□□□ 1.16
HDAC4-215ENST00000543185 CTNNA2P26232 953 aa22.29■■□□□ 1.16
HDAC4-215ENST00000543185 NOL3O60936 208 aaKnown RBP22.29■■□□□ 1.16
HDAC4-215ENST00000543185 RPGRIP1LQ68CZ1 1315 aa22.29■■□□□ 1.16
HDAC4-215ENST00000543185 ALDH1L2Q3SY69 923 aa22.29■■□□□ 1.16
HDAC4-215ENST00000543185 LIMCH1Q9UPQ0 1083 aa22.29■■□□□ 1.16
HDAC4-215ENST00000543185 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP22.29■■□□□ 1.16
HDAC4-215ENST00000543185 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP22.28■■□□□ 1.164e-6■■■□□ 17.9
HDAC4-215ENST00000543185 ZHX1Q9UKY1 873 aaPredicted RBP22.28■■□□□ 1.16
HDAC4-215ENST00000543185 HOMER2Q9NSB8 354 aa22.28■■□□□ 1.16
HDAC4-215ENST00000543185 CCDC6Q16204 474 aa22.28■■□□□ 1.16
HDAC4-215ENST00000543185 C1orf115Q9H7X2 142 aa22.28■■□□□ 1.16
HDAC4-215ENST00000543185 PTPN23Q9H3S7 1636 aa22.28■■□□□ 1.16
HDAC4-215ENST00000543185 CUL7Q14999 1698 aa22.28■■□□□ 1.16
HDAC4-215ENST00000543185 EXOSC9Q06265 439 aaKnown RBP22.28■■□□□ 1.16
HDAC4-215ENST00000543185 MPHOSPH8Q99549 860 aa22.28■■□□□ 1.16
HDAC4-215ENST00000543185 CFAP65Q6ZU64 1925 aaKnown RBP22.28■■□□□ 1.16
HDAC4-215ENST00000543185 SRGAP3O43295 1099 aa22.28■■□□□ 1.16
HDAC4-215ENST00000543185 LRRC27Q9C0I9 530 aa22.28■■□□□ 1.16
HDAC4-215ENST00000543185 CADPSQ9ULU8 1353 aa22.27■■□□□ 1.16
HDAC4-215ENST00000543185 MX1P20591 662 aa22.27■■□□□ 1.16
HDAC4-215ENST00000543185 SH3BGRP55822 239 aaPredicted RBP22.27■■□□□ 1.16
HDAC4-215ENST00000543185 STXBP4Q6ZWJ1 553 aa22.27■■□□□ 1.16
HDAC4-215ENST00000543185 KIF1BPQ96EK5 621 aa22.27■■□□□ 1.16
HDAC4-215ENST00000543185 ZSCAN16Q9H4T2 348 aaPredicted RBP22.27■■□□□ 1.16
HDAC4-215ENST00000543185 ZNF76P36508 570 aa22.27■■□□□ 1.16
HDAC4-215ENST00000543185 CCDC121Q6ZUS5 278 aa22.27■■□□□ 1.16
HDAC4-215ENST00000543185 AKAP2Q9Y2D5 859 aa22.27■■□□□ 1.16
HDAC4-215ENST00000543185 A0A1B0GUA9 196 aa22.27■■□□□ 1.16
HDAC4-215ENST00000543185 SAMD1Q6SPF0 538 aaPredicted RBP22.27■■□□□ 1.16
HDAC4-215ENST00000543185 CCDC50Q8IVM0 306 aa22.27■■□□□ 1.16
HDAC4-215ENST00000543185 PTPRGP23470 1445 aa22.27■■□□□ 1.16
HDAC4-215ENST00000543185 ATAD2Q6PL18 1390 aa22.27■■□□□ 1.16
HDAC4-215ENST00000543185 SSBP05455 408 aaKnown RBP eCLIP22.27■■□□□ 1.16
HDAC4-215ENST00000543185 CTCFLQ8NI51 663 aaPredicted RBP22.27■■□□□ 1.16
HDAC4-215ENST00000543185 CCDC12Q8WUD4 166 aaPredicted RBP22.27■■□□□ 1.16
HDAC4-215ENST00000543185 CCDC97Q96F63 343 aaPredicted RBP22.27■■□□□ 1.16
HDAC4-215ENST00000543185 IQCGQ9H095 443 aaKnown RBP22.26■■□□□ 1.15
HDAC4-215ENST00000543185 SELENOOQ9BVL4 669 aa22.26■■□□□ 1.15
HDAC4-215ENST00000543185 RMND1Q9NWS8 449 aa22.26■■□□□ 1.15
HDAC4-215ENST00000543185 NAP1L3Q99457 506 aaPredicted RBP22.26■■□□□ 1.15
HDAC4-215ENST00000543185 PPP1R14CQ8TAE6 165 aa22.26■■□□□ 1.15
HDAC4-215ENST00000543185 TNPO1Q92973 898 aaKnown RBP22.26■■□□□ 1.15
HDAC4-215ENST00000543185 SMC6Q96SB8 1091 aa22.26■■□□□ 1.15
HDAC4-215ENST00000543185 CNNM3Q8NE01 707 aa22.26■■□□□ 1.15
HDAC4-215ENST00000543185 MTMR7Q9Y216 660 aa22.26■■□□□ 1.15
HDAC4-215ENST00000543185 A0A1W2PRG0 241 aa22.25■■□□□ 1.15
HDAC4-215ENST00000543185 B4GALNT4Q76KP1 1039 aa22.25■■□□□ 1.15
HDAC4-215ENST00000543185 KIF3CO14782 793 aa22.25■■□□□ 1.15
HDAC4-215ENST00000543185 KIAA0753Q2KHM9 967 aa22.25■■□□□ 1.15
HDAC4-215ENST00000543185 AIDAQ96BJ3 306 aa22.25■■□□□ 1.15
HDAC4-215ENST00000543185 ZFYP08048 801 aaPredicted RBP22.25■■□□□ 1.15
HDAC4-215ENST00000543185 ACTN2P35609 894 aa22.25■■□□□ 1.15
HDAC4-215ENST00000543185 FMNL3Q8IVF7 1028 aa22.25■■□□□ 1.15
HDAC4-215ENST00000543185 STIM2Q9P246 746 aa22.25■■□□□ 1.15
HDAC4-215ENST00000543185 LRRC45Q96CN5 670 aa22.24■■□□□ 1.15
HDAC4-215ENST00000543185 CTNNBL1Q8WYA6 563 aaPredicted RBP22.24■■□□□ 1.15
HDAC4-215ENST00000543185 HMG20BQ9P0W2 317 aa22.24■■□□□ 1.15
HDAC4-215ENST00000543185 LRPPRCP42704 1394 aaKnown RBP22.23■■□□□ 1.15
HDAC4-215ENST00000543185 FANCD2Q9BXW9 1451 aa22.23■■□□□ 1.15
HDAC4-215ENST00000543185 TMC6Q7Z403 805 aa22.23■■□□□ 1.15
HDAC4-215ENST00000543185 GOLGA1Q92805 767 aa22.23■■□□□ 1.15
HDAC4-215ENST00000543185 JAKMIP2Q96AA8 810 aa22.23■■□□□ 1.15
HDAC4-215ENST00000543185 ZNF165P49910 485 aa22.23■■□□□ 1.15
HDAC4-215ENST00000543185 MPNDQ8N594 471 aa22.23■■□□□ 1.15
HDAC4-215ENST00000543185 USH1CQ9Y6N9 552 aa22.23■■□□□ 1.15
HDAC4-215ENST00000543185 KIF5BP33176 963 aa22.23■■□□□ 1.15
HDAC4-215ENST00000543185 FKBP4Q02790 459 aaKnown RBP eCLIP22.23■■□□□ 1.151e-6■■■■■ 33.9
HDAC4-215ENST00000543185 CCDC77Q9BR77 488 aa22.23■■□□□ 1.15
HDAC4-215ENST00000543185 BMP15O95972 392 aa22.23■■□□□ 1.15
HDAC4-215ENST00000543185 RNF41Q9H4P4 317 aaPredicted RBP22.23■■□□□ 1.15
HDAC4-215ENST00000543185 EHMT1Q9H9B1 1298 aa22.23■■□□□ 1.15
HDAC4-215ENST00000543185 GBP6Q6ZN66 633 aa22.22■■□□□ 1.15
HDAC4-215ENST00000543185 CDCA7LQ96GN5 454 aa22.22■■□□□ 1.15
HDAC4-215ENST00000543185 CEP128Q6ZU80 1094 aa22.22■■□□□ 1.15
HDAC4-215ENST00000543185 CCDC110Q8TBZ0 833 aa22.22■■□□□ 1.15
HDAC4-215ENST00000543185 C9orf84Q5VXU9 1444 aa22.22■■□□□ 1.15
HDAC4-215ENST00000543185 SYNJ2O15056 1496 aa22.22■■□□□ 1.15
HDAC4-215ENST00000543185 EIF2AK4Q9P2K8 1649 aaKnown RBP22.22■■□□□ 1.15
HDAC4-215ENST00000543185 ATP2A1O14983 1001 aa22.22■■□□□ 1.15
HDAC4-215ENST00000543185 KLHL10Q6JEL2 608 aa22.22■■□□□ 1.15
HDAC4-215ENST00000543185 DHX37Q8IY37 1157 aaKnown RBP22.22■■□□□ 1.15
HDAC4-215ENST00000543185 USP25Q9UHP3 1055 aa22.22■■□□□ 1.15
HDAC4-215ENST00000543185 TDRD12Q587J7 1177 aaKnown RBP22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms