RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 CD2BP2O95400 341 aaKnown RBP20.12■□□□□ 0.81
COL4A1-204ENST00000543140 AIMP1Q12904 312 aaKnown RBP20.12■□□□□ 0.81
COL4A1-204ENST00000543140 ZNF790Q6PG37 636 aa20.12■□□□□ 0.81
COL4A1-204ENST00000543140 SURF6O75683 361 aaKnown RBP20.12■□□□□ 0.81
COL4A1-204ENST00000543140 MX1P20591 662 aa20.12■□□□□ 0.81
COL4A1-204ENST00000543140 CASC1Q6TDU7 716 aa20.12■□□□□ 0.81
COL4A1-204ENST00000543140 SNX21Q969T3 373 aa20.12■□□□□ 0.81
COL4A1-204ENST00000543140 SCN11AQ9UI33 1791 aa20.11■□□□□ 0.81
COL4A1-204ENST00000543140 IFNL2Q8IZJ0 200 aa20.11■□□□□ 0.81
COL4A1-204ENST00000543140 SALL3Q9BXA9 1300 aa20.11■□□□□ 0.81
COL4A1-204ENST00000543140 ZNF335Q9H4Z2 1342 aaPredicted RBP20.11■□□□□ 0.81
COL4A1-204ENST00000543140 ADAMTS7Q9UKP4 1686 aa20.11■□□□□ 0.81
COL4A1-204ENST00000543140 USP26Q9BXU7 913 aa20.1■□□□□ 0.81
COL4A1-204ENST00000543140 CYP27B1O15528 508 aa20.1■□□□□ 0.81
COL4A1-204ENST00000543140 CWF19L2Q2TBE0 894 aaKnown RBP20.1■□□□□ 0.81
COL4A1-204ENST00000543140 KSR2Q6VAB6 950 aa20.1■□□□□ 0.81
COL4A1-204ENST00000543140 HSP90AB1P08238 724 aaKnown RBP20.09■□□□□ 0.81
COL4A1-204ENST00000543140 POLA2Q14181 598 aa20.09■□□□□ 0.81
COL4A1-204ENST00000543140 STRCQ7RTU9 1775 aa20.09■□□□□ 0.81
COL4A1-204ENST00000543140 HYPKQ9NX55 129 aa20.09■□□□□ 0.81
COL4A1-204ENST00000543140 C9orf78Q9NZ63 289 aaPredicted RBP20.09■□□□□ 0.81
COL4A1-204ENST00000543140 NUTM1Q86Y26 1132 aa20.08■□□□□ 0.81
COL4A1-204ENST00000543140 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.08■□□□□ 0.81
COL4A1-204ENST00000543140 SLAIN2Q9P270 581 aa20.08■□□□□ 0.81
COL4A1-204ENST00000543140 KDM4FA0A1W2PPD8 638 aa20.08■□□□□ 0.8
COL4A1-204ENST00000543140 MYL6BP14649 208 aa20.08■□□□□ 0.8
COL4A1-204ENST00000543140 PRDM11Q9NQV5 511 aa20.08■□□□□ 0.8
COL4A1-204ENST00000543140 DDX21Q9NR30 783 aaKnown RBP eCLIP20.08■□□□□ 0.8
COL4A1-204ENST00000543140 TRIM6-TRIM34B2RNG4 842 aa20.07■□□□□ 0.8
COL4A1-204ENST00000543140 PDIA6Q15084 440 aa20.07■□□□□ 0.8
COL4A1-204ENST00000543140 ZNF496Q96IT1 587 aaPredicted RBP20.07■□□□□ 0.8
COL4A1-204ENST00000543140 FOXD4L1Q9NU39 408 aa20.07■□□□□ 0.8
COL4A1-204ENST00000543140 GSE1Q14687 1217 aa20.07■□□□□ 0.8
COL4A1-204ENST00000543140 RILPL2Q969X0 211 aa20.07■□□□□ 0.8
COL4A1-204ENST00000543140 CHMP5Q9NZZ3 219 aa20.07■□□□□ 0.8
COL4A1-204ENST00000543140 LMTK3Q96Q04 1460 aa20.07■□□□□ 0.8
COL4A1-204ENST00000543140 EIF5BO60841 1220 aaKnown RBP20.06■□□□□ 0.8
COL4A1-204ENST00000543140 DCAF5Q96JK2 942 aa20.06■□□□□ 0.8
COL4A1-204ENST00000543140 C5P01031 1676 aa20.06■□□□□ 0.8
COL4A1-204ENST00000543140 CPDO75976 1380 aa20.05■□□□□ 0.8
COL4A1-204ENST00000543140 PIP4K2AP48426 406 aaPredicted RBP20.05■□□□□ 0.8
COL4A1-204ENST00000543140 RHPN1Q8TCX5 695 aa20.05■□□□□ 0.8
COL4A1-204ENST00000543140 ERC2O15083 957 aa20.05■□□□□ 0.8
COL4A1-204ENST00000543140 HSP90AA1P07900 732 aaKnown RBP20.05■□□□□ 0.8
COL4A1-204ENST00000543140 TTC5Q8N0Z6 440 aa20.04■□□□□ 0.8
COL4A1-204ENST00000543140 TUBGCP6Q96RT7 1819 aa20.04■□□□□ 0.8
COL4A1-204ENST00000543140 RAB11FIP3O75154 756 aa20.04■□□□□ 0.8
COL4A1-204ENST00000543140 ALDH1L1O75891 902 aa20.04■□□□□ 0.8
COL4A1-204ENST00000543140 REC8O95072 547 aa20.04■□□□□ 0.8
COL4A1-204ENST00000543140 TOM1L2Q6ZVM7 507 aa20.04■□□□□ 0.8
COL4A1-204ENST00000543140 UNC5CLQ8IV45 518 aa20.04■□□□□ 0.8
COL4A1-204ENST00000543140 STAP2Q9UGK3 403 aa20.04■□□□□ 0.8
COL4A1-204ENST00000543140 K7ELQ4 463 aaPredicted RBP20.03■□□□□ 0.8
COL4A1-204ENST00000543140 DDX58O95786 925 aaKnown RBP20.03■□□□□ 0.8
COL4A1-204ENST00000543140 USP16Q9Y5T5 823 aa20.03■□□□□ 0.8
COL4A1-204ENST00000543140 RIC3Q7Z5B4 369 aa20.03■□□□□ 0.8
COL4A1-204ENST00000543140 CABP4P57796 275 aa20.02■□□□□ 0.8
COL4A1-204ENST00000543140 OS9Q13438 667 aaPredicted RBP20.02■□□□□ 0.8
COL4A1-204ENST00000543140 MAP4K4O95819 1239 aaPredicted RBP20.02■□□□□ 0.79
COL4A1-204ENST00000543140 LINS1Q8NG48 757 aa20.02■□□□□ 0.79
COL4A1-204ENST00000543140 XAGE3Q8WTP9 111 aa20.02■□□□□ 0.79
COL4A1-204ENST00000543140 KIF1BPQ96EK5 621 aa20.02■□□□□ 0.79
COL4A1-204ENST00000543140 RABEP1Q15276 862 aa20.01■□□□□ 0.79
COL4A1-204ENST00000543140 COPS6Q7L5N1 327 aa20.01■□□□□ 0.79
COL4A1-204ENST00000543140 SOS2Q07890 1332 aaPredicted RBP20.01■□□□□ 0.79
COL4A1-204ENST00000543140 ABCC6O95255 1503 aa20■□□□□ 0.79
COL4A1-204ENST00000543140 DDIT3P35638 169 aa20■□□□□ 0.79
COL4A1-204ENST00000543140 PKD1L3Q7Z443 1732 aa20■□□□□ 0.79
COL4A1-204ENST00000543140 PA2G4Q9UQ80 394 aaKnown RBP20■□□□□ 0.79
COL4A1-204ENST00000543140 GRM8O00222 908 aa20■□□□□ 0.79
COL4A1-204ENST00000543140 SNRPA1P09661 255 aaKnown RBP20■□□□□ 0.79
COL4A1-204ENST00000543140 ESYT1Q9BSJ8 1104 aa20■□□□□ 0.79
COL4A1-204ENST00000543140 WDR17Q8IZU2 1322 aa19.99■□□□□ 0.79
COL4A1-204ENST00000543140 IGKV5-2P06315 115 aa19.99■□□□□ 0.79
COL4A1-204ENST00000543140 CHMLP26374 656 aa19.99■□□□□ 0.79
COL4A1-204ENST00000543140 SUCLG2Q96I99 432 aa19.99■□□□□ 0.79
COL4A1-204ENST00000543140 FMNL2Q96PY5 1086 aa19.99■□□□□ 0.79
COL4A1-204ENST00000543140 STRN4Q9NRL3 753 aa19.99■□□□□ 0.79
COL4A1-204ENST00000543140 MTX1Q13505 466 aa19.98■□□□□ 0.79
COL4A1-204ENST00000543140 LARP1Q6PKG0 1096 aaKnown RBP19.98■□□□□ 0.79
COL4A1-204ENST00000543140 KAZALD1Q96I82 304 aa19.98■□□□□ 0.79
COL4A1-204ENST00000543140 MCM4P33991 863 aa19.97■□□□□ 0.79
COL4A1-204ENST00000543140 HSP90AB4PQ58FF6 505 aa19.97■□□□□ 0.79
COL4A1-204ENST00000543140 ZCRB1Q8TBF4 217 aaKnown RBP19.97■□□□□ 0.79
COL4A1-204ENST00000543140 BICC1Q9H694 974 aaKnown RBP19.97■□□□□ 0.79
COL4A1-204ENST00000543140 PI4K2BQ8TCG2 481 aa19.97■□□□□ 0.79
COL4A1-204ENST00000543140 MYD88Q99836 296 aa19.97■□□□□ 0.79
COL4A1-204ENST00000543140 NEXNQ0ZGT2 675 aa19.96■□□□□ 0.79
COL4A1-204ENST00000543140 ANO2Q9NQ90 1003 aa19.96■□□□□ 0.79
COL4A1-204ENST00000543140 AOX1Q06278 1338 aa19.96■□□□□ 0.79
COL4A1-204ENST00000543140 MRC1P22897 1456 aa19.96■□□□□ 0.79
COL4A1-204ENST00000543140 AK9Q5TCS8 1911 aa19.96■□□□□ 0.79
COL4A1-204ENST00000543140 DDX54Q8TDD1 881 aaKnown RBP19.96■□□□□ 0.79
COL4A1-204ENST00000543140 JARID2Q92833 1246 aaPredicted RBP19.96■□□□□ 0.79
COL4A1-204ENST00000543140 ANKRD13DQ6ZTN6 518 aa19.95■□□□□ 0.78
COL4A1-204ENST00000543140 COL5A2P05997 1499 aaPredicted RBP19.95■□□□□ 0.78
COL4A1-204ENST00000543140 NEURL1BA8MQ27 555 aa19.95■□□□□ 0.78
COL4A1-204ENST00000543140 HDAC5Q9UQL6 1122 aa19.95■□□□□ 0.78
COL4A1-204ENST00000543140 LRP10Q7Z4F1 713 aa19.94■□□□□ 0.78
COL4A1-204ENST00000543140 PCDH11XQ9BZA7 1347 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms