RNA–Protein interactions for RNA: ENST00000542700.6

CHMP4A-209, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 3

Gene CHMP4A, Length 847 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-209ENST00000542700 NBPF6Q5VWK0 638 aa11.18□□□□□ -0.62
CHMP4A-209ENST00000542700 NBPF4Q96M43 638 aa11.18□□□□□ -0.62
CHMP4A-209ENST00000542700 TMOD3Q9NYL9 352 aa11.18□□□□□ -0.62
CHMP4A-209ENST00000542700 HACL1Q9UJ83 578 aa11.18□□□□□ -0.62
CHMP4A-209ENST00000542700 KDRP35968 1356 aa11.17□□□□□ -0.62
CHMP4A-209ENST00000542700 RPS6KA4O75676 772 aa11.17□□□□□ -0.62
CHMP4A-209ENST00000542700 BRPF1P55201 1214 aaPredicted RBP11.17□□□□□ -0.62
CHMP4A-209ENST00000542700 SMG6Q86US8 1419 aaKnown RBP11.17□□□□□ -0.62
CHMP4A-209ENST00000542700 SBNO2Q9Y2G9 1366 aa11.16□□□□□ -0.62
CHMP4A-209ENST00000542700 MAP3K19Q56UN5 1328 aa11.16□□□□□ -0.62
CHMP4A-209ENST00000542700 CNTNAP4Q9C0A0 1308 aa11.16□□□□□ -0.62
CHMP4A-209ENST00000542700 USP42Q9H9J4 1324 aaKnown RBP11.16□□□□□ -0.62
CHMP4A-209ENST00000542700 C21orf2O43822 256 aa11.16□□□□□ -0.62
CHMP4A-209ENST00000542700 AMPHP49418 695 aa11.16□□□□□ -0.62
CHMP4A-209ENST00000542700 CIAPIN1Q6FI81 312 aa11.16□□□□□ -0.62
CHMP4A-209ENST00000542700 C2CD5Q86YS7 1000 aa11.16□□□□□ -0.62
CHMP4A-209ENST00000542700 TAOK3Q9H2K8 898 aa11.16□□□□□ -0.62
CHMP4A-209ENST00000542700 RC3H1Q5TC82 1133 aaKnown RBP11.15□□□□□ -0.62
CHMP4A-209ENST00000542700 PNMA8AQ86V59 439 aaPredicted RBP11.15□□□□□ -0.62
CHMP4A-209ENST00000542700 RBM42Q9BTD8 480 aaKnown RBP11.15□□□□□ -0.62
CHMP4A-209ENST00000542700 ATG3Q9NT62 314 aa11.15□□□□□ -0.62
CHMP4A-209ENST00000542700 TLL2Q9Y6L7 1015 aa11.15□□□□□ -0.62
CHMP4A-209ENST00000542700 RNF123Q5XPI4 1314 aa11.14□□□□□ -0.63
CHMP4A-209ENST00000542700 ZNF541Q9H0D2 1346 aa11.14□□□□□ -0.63
CHMP4A-209ENST00000542700 SLC4A9Q96Q91 983 aa11.14□□□□□ -0.63
CHMP4A-209ENST00000542700 COL5A3P25940 1745 aaPredicted RBP11.14□□□□□ -0.63
CHMP4A-209ENST00000542700 FER1L6Q2WGJ9 1857 aa11.14□□□□□ -0.63
CHMP4A-209ENST00000542700 LTBP3Q9NS15 1303 aa11.13□□□□□ -0.63
CHMP4A-209ENST00000542700 H0YIN7 160 aa11.13□□□□□ -0.63
CHMP4A-209ENST00000542700 TRAF5O00463 557 aa11.13□□□□□ -0.63
CHMP4A-209ENST00000542700 CST9Q5W186 159 aa11.13□□□□□ -0.63
CHMP4A-209ENST00000542700 CARMIL3Q8ND23 1372 aa11.13□□□□□ -0.63
CHMP4A-209ENST00000542700 PITPNM2Q9BZ72 1349 aa11.12□□□□□ -0.63
CHMP4A-209ENST00000542700 FBLN1P23142 703 aa11.12□□□□□ -0.63
CHMP4A-209ENST00000542700 TM4SF1P30408 202 aa11.12□□□□□ -0.63
CHMP4A-209ENST00000542700 HPS5Q9UPZ3 1129 aa11.12□□□□□ -0.63
CHMP4A-209ENST00000542700 CUL9Q8IWT3 2517 aa11.12□□□□□ -0.63
CHMP4A-209ENST00000542700 ZNF622Q969S3 477 aaKnown RBP eCLIP11.11□□□□□ -0.632e-7■■■□□ 18.4
CHMP4A-209ENST00000542700 AFDNP55196 1824 aaKnown RBP11.11□□□□□ -0.63
CHMP4A-209ENST00000542700 MYH14Q7Z406 1995 aaKnown RBP11.1□□□□□ -0.63
CHMP4A-209ENST00000542700 NKX1-1Q15270 411 aaPredicted RBP11.1□□□□□ -0.63
CHMP4A-209ENST00000542700 CTU1Q7Z7A3 348 aaKnown RBP11.1□□□□□ -0.63
CHMP4A-209ENST00000542700 EDC4Q6P2E9 1401 aaKnown RBP11.09□□□□□ -0.63
CHMP4A-209ENST00000542700 NFIXQ14938 502 aa11.09□□□□□ -0.63
CHMP4A-209ENST00000542700 USPL1Q5W0Q7 1092 aa11.09□□□□□ -0.63
CHMP4A-209ENST00000542700 SAPCD2Q86UD0 394 aa11.09□□□□□ -0.63
CHMP4A-209ENST00000542700 ZIC5Q96T25 663 aa11.09□□□□□ -0.63
CHMP4A-209ENST00000542700 NRXN2Q9P2S2 1712 aa11.09□□□□□ -0.63
CHMP4A-209ENST00000542700 TRPM7Q96QT4 1865 aa11.08□□□□□ -0.64
CHMP4A-209ENST00000542700 ZNF831Q5JPB2 1677 aa11.08□□□□□ -0.64
CHMP4A-209ENST00000542700 RTL1A6NKG5 1358 aa11.08□□□□□ -0.64
CHMP4A-209ENST00000542700 SERPINB2P05120 415 aa11.08□□□□□ -0.64
CHMP4A-209ENST00000542700 CRKLP46109 303 aaKnown RBP11.08□□□□□ -0.64
CHMP4A-209ENST00000542700 BICDL1Q6ZP65 573 aa11.08□□□□□ -0.64
CHMP4A-209ENST00000542700 ZPR1O75312 459 aa11.07□□□□□ -0.64
CHMP4A-209ENST00000542700 HDGFL2Q7Z4V5 671 aaPredicted RBP11.07□□□□□ -0.64
CHMP4A-209ENST00000542700 COLQQ9Y215 455 aaPredicted RBP11.07□□□□□ -0.64
CHMP4A-209ENST00000542700 CELF2O95319 508 aaKnown RBP11.06□□□□□ -0.64
CHMP4A-209ENST00000542700 NOGQ13253 232 aa11.06□□□□□ -0.64
CHMP4A-209ENST00000542700 RRS1Q15050 365 aaKnown RBP11.06□□□□□ -0.64
CHMP4A-209ENST00000542700 SPG7Q9UQ90 795 aa11.06□□□□□ -0.64
CHMP4A-209ENST00000542700 COL11A2P13942 1736 aaPredicted RBP11.06□□□□□ -0.64
CHMP4A-209ENST00000542700 INSRP06213 1382 aa11.05□□□□□ -0.64
CHMP4A-209ENST00000542700 AKAP4Q5JQC9 854 aa11.05□□□□□ -0.64
CHMP4A-209ENST00000542700 TMC1Q8TDI8 760 aa11.05□□□□□ -0.64
CHMP4A-209ENST00000542700 COG3Q96JB2 828 aa11.05□□□□□ -0.64
CHMP4A-209ENST00000542700 HHIPL1Q96JK4 782 aa11.05□□□□□ -0.64
CHMP4A-209ENST00000542700 SAGE1Q9NXZ1 904 aa11.05□□□□□ -0.64
CHMP4A-209ENST00000542700 TRPA1O75762 1119 aa11.04□□□□□ -0.64
CHMP4A-209ENST00000542700 ZNF408Q9H9D4 720 aa11.04□□□□□ -0.64
CHMP4A-209ENST00000542700 ZNF277Q9NRM2 450 aaPredicted RBP11.04□□□□□ -0.64
CHMP4A-209ENST00000542700 PTCD1O75127 700 aaKnown RBP11.03□□□□□ -0.64
CHMP4A-209ENST00000542700 PRPF40BQ6NWY9 871 aaKnown RBP11.03□□□□□ -0.64
CHMP4A-209ENST00000542700 A0A1W2PP64 1363 aa11.03□□□□□ -0.64
CHMP4A-209ENST00000542700 ANKRD31Q8N7Z5 1873 aa11.02□□□□□ -0.64
CHMP4A-209ENST00000542700 PHKG2P15735 406 aa11.02□□□□□ -0.65
CHMP4A-209ENST00000542700 LMOD1P29536 600 aaPredicted RBP11.02□□□□□ -0.65
CHMP4A-209ENST00000542700 MNX1P50219 401 aaPredicted RBP11.02□□□□□ -0.65
CHMP4A-209ENST00000542700 SOGA3Q5TF21 947 aa11.02□□□□□ -0.65
CHMP4A-209ENST00000542700 GPC2Q8N158 579 aa11.02□□□□□ -0.65
CHMP4A-209ENST00000542700 CCDC24Q8N4L8 307 aa11.02□□□□□ -0.65
CHMP4A-209ENST00000542700 RNF186Q9NXI6 227 aa11.02□□□□□ -0.65
CHMP4A-209ENST00000542700 SCN11AQ9UI33 1791 aa11.02□□□□□ -0.65
CHMP4A-209ENST00000542700 SLX4Q8IY92 1834 aa11.02□□□□□ -0.65
CHMP4A-209ENST00000542700 CACNA1SQ13698 1873 aa11.02□□□□□ -0.65
CHMP4A-209ENST00000542700 TRIOBPQ9H2D6 2365 aa11.02□□□□□ -0.65
CHMP4A-209ENST00000542700 PDE6BP35913 854 aa11.01□□□□□ -0.65
CHMP4A-209ENST00000542700 EPS15P42566 896 aa11.01□□□□□ -0.65
CHMP4A-209ENST00000542700 HSP90AB2PQ58FF8 381 aa11.01□□□□□ -0.65
CHMP4A-209ENST00000542700 SYNE4Q8N205 404 aa11.01□□□□□ -0.65
CHMP4A-209ENST00000542700 SLC12A5Q9H2X9 1139 aa11.01□□□□□ -0.65
CHMP4A-209ENST00000542700 GJA3Q9Y6H8 435 aa11.01□□□□□ -0.65
CHMP4A-209ENST00000542700 PKN2Q16513 984 aaKnown RBP11□□□□□ -0.65
CHMP4A-209ENST00000542700 CCDC93Q567U6 631 aa11□□□□□ -0.65
CHMP4A-209ENST00000542700 INTS5Q6P9B9 1019 aaKnown RBP11□□□□□ -0.65
CHMP4A-209ENST00000542700 IFNL2Q8IZJ0 200 aa11□□□□□ -0.65
CHMP4A-209ENST00000542700 CNKSR1Q969H4 720 aa11□□□□□ -0.65
CHMP4A-209ENST00000542700 A0A0C4DFX4 3053 aa11□□□□□ -0.65
CHMP4A-209ENST00000542700 TJP1Q07157 1748 aa10.99□□□□□ -0.65
CHMP4A-209ENST00000542700 FZD9O00144 591 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms