RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 EXOSC9Q06265 439 aaKnown RBP15□□□□□ -0.01
YBX3-213ENST00000542641 DUSP27Q5VZP5 1158 aa15□□□□□ -0.01
YBX3-213ENST00000542641 C8orf58Q8NAV2 365 aa15□□□□□ -0.01
YBX3-213ENST00000542641 TEX13AQ9BXU3 409 aaPredicted RBP15□□□□□ -0.01
YBX3-213ENST00000542641 KDM3BQ7LBC6 1761 aa14.99□□□□□ -0.01
YBX3-213ENST00000542641 ITPK1Q13572 414 aa14.99□□□□□ -0.01
YBX3-213ENST00000542641 DNAJC10Q8IXB1 793 aa14.99□□□□□ -0.01
YBX3-213ENST00000542641 LRRC4BQ9NT99 713 aa14.99□□□□□ -0.01
YBX3-213ENST00000542641 PRAMEF22A3QJZ6 481 aa14.98□□□□□ -0.01
YBX3-213ENST00000542641 STARD3NLO95772 234 aa14.97□□□□□ -0.01
YBX3-213ENST00000542641 HMGB2P26583 209 aaKnown RBP14.97□□□□□ -0.01
YBX3-213ENST00000542641 TWISTNBQ3B726 338 aaPredicted RBP14.97□□□□□ -0.01
YBX3-213ENST00000542641 TSPYL6Q8N831 410 aa14.97□□□□□ -0.01
YBX3-213ENST00000542641 USP16Q9Y5T5 823 aa14.97□□□□□ -0.01
YBX3-213ENST00000542641 UBR2Q8IWV8 1755 aa14.97□□□□□ -0.01
YBX3-213ENST00000542641 HOXB7P09629 217 aa14.96□□□□□ -0.01
YBX3-213ENST00000542641 EIF2S2P20042 333 aaKnown RBP14.96□□□□□ -0.01
YBX3-213ENST00000542641 LINC00116Q8NCU8 138 aa14.96□□□□□ -0.01
YBX3-213ENST00000542641 ZBTB12Q9Y330 459 aaPredicted RBP14.96□□□□□ -0.01
YBX3-213ENST00000542641 SOS1Q07889 1333 aaPredicted RBP14.95□□□□□ -0.02
YBX3-213ENST00000542641 LY75O60449 1722 aa14.95□□□□□ -0.02
YBX3-213ENST00000542641 CYP19A1P11511 503 aaPredicted RBP14.95□□□□□ -0.02
YBX3-213ENST00000542641 CHMP4AQ9BY43 222 aa14.95□□□□□ -0.02
YBX3-213ENST00000542641 VAMP4O75379 141 aa14.94□□□□□ -0.02
YBX3-213ENST00000542641 HDGFL1Q5TGJ6 251 aa14.94□□□□□ -0.02
YBX3-213ENST00000542641 NECTIN2Q92692 538 aa14.94□□□□□ -0.02
YBX3-213ENST00000542641 CRKLP46109 303 aaKnown RBP14.93□□□□□ -0.02
YBX3-213ENST00000542641 CCDC87Q9NVE4 849 aa14.93□□□□□ -0.02
YBX3-213ENST00000542641 RGPD3A6NKT7 1758 aaPredicted RBP14.93□□□□□ -0.02
YBX3-213ENST00000542641 RGPD4Q7Z3J3 1758 aa14.93□□□□□ -0.02
YBX3-213ENST00000542641 A1BGP04217 495 aa14.92□□□□□ -0.02
YBX3-213ENST00000542641 CT47B1P0C2W7 299 aaPredicted RBP14.92□□□□□ -0.02
YBX3-213ENST00000542641 RC3H1Q5TC82 1133 aaKnown RBP14.92□□□□□ -0.02
YBX3-213ENST00000542641 CCDC30Q5VVM6 783 aa14.92□□□□□ -0.02
YBX3-213ENST00000542641 INTS5Q6P9B9 1019 aaKnown RBP14.92□□□□□ -0.02
YBX3-213ENST00000542641 AK7Q96M32 723 aa14.92□□□□□ -0.02
YBX3-213ENST00000542641 CNTNAP4Q9C0A0 1308 aa14.92□□□□□ -0.02
YBX3-213ENST00000542641 ZNF831Q5JPB2 1677 aa14.91□□□□□ -0.02
YBX3-213ENST00000542641 SOCS7O14512 581 aa14.91□□□□□ -0.02
YBX3-213ENST00000542641 CANXP27824 592 aaKnown RBP14.91□□□□□ -0.02
YBX3-213ENST00000542641 TJP1Q07157 1748 aa14.9□□□□□ -0.02
YBX3-213ENST00000542641 TCERG1O14776 1098 aaKnown RBP14.9□□□□□ -0.02
YBX3-213ENST00000542641 PIP4K2AP48426 406 aaPredicted RBP14.9□□□□□ -0.02
YBX3-213ENST00000542641 NBPF14Q5TI25 921 aa14.9□□□□□ -0.02
YBX3-213ENST00000542641 ZNF428Q96B54 188 aa14.9□□□□□ -0.02
YBX3-213ENST00000542641 STK31Q9BXU1 1019 aa14.9□□□□□ -0.02
YBX3-213ENST00000542641 STK32BQ9NY57 414 aa14.9□□□□□ -0.02
YBX3-213ENST00000542641 DBF4Q9UBU7 674 aaPredicted RBP14.9□□□□□ -0.02
YBX3-213ENST00000542641 ZBTB1Q9Y2K1 713 aa14.9□□□□□ -0.02
YBX3-213ENST00000542641 C5P01031 1676 aa14.9□□□□□ -0.02
YBX3-213ENST00000542641 ERBB4Q15303 1308 aa14.9□□□□□ -0.02
YBX3-213ENST00000542641 NBPF26B4DH59 902 aa14.89□□□□□ -0.03
YBX3-213ENST00000542641 GNPATO15228 680 aa14.89□□□□□ -0.03
YBX3-213ENST00000542641 MYL6BP14649 208 aa14.89□□□□□ -0.03
YBX3-213ENST00000542641 ZNF827Q17R98 1081 aa14.89□□□□□ -0.03
YBX3-213ENST00000542641 NBPF10Q6P3W6 841 aaKnown RBP14.89□□□□□ -0.03
YBX3-213ENST00000542641 NBPF15Q8N660 670 aa14.89□□□□□ -0.03
YBX3-213ENST00000542641 AKT1S1Q96B36 256 aa14.89□□□□□ -0.03
YBX3-213ENST00000542641 TFCP2L1Q9NZI6 479 aa14.89□□□□□ -0.03
YBX3-213ENST00000542641 CHPF2Q9P2E5 772 aa14.89□□□□□ -0.03
YBX3-213ENST00000542641 RTCBQ9Y3I0 505 aaKnown RBP14.89□□□□□ -0.03
YBX3-213ENST00000542641 ZNF330Q9Y3S2 320 aaPredicted RBP14.89□□□□□ -0.03
YBX3-213ENST00000542641 CICQ96RK0 1608 aaPredicted RBP14.88□□□□□ -0.03
YBX3-213ENST00000542641 RPS6KA4O75676 772 aa14.88□□□□□ -0.03
YBX3-213ENST00000542641 ANXA1P04083 346 aa14.88□□□□□ -0.03
YBX3-213ENST00000542641 IL6STP40189 918 aaPredicted RBP14.88□□□□□ -0.03
YBX3-213ENST00000542641 PDIA6Q15084 440 aa14.88□□□□□ -0.03
YBX3-213ENST00000542641 SLC15A2Q16348 729 aa14.88□□□□□ -0.03
YBX3-213ENST00000542641 NPM2Q86SE8 214 aaKnown RBP14.88□□□□□ -0.03
YBX3-213ENST00000542641 ANO8Q9HCE9 1232 aaPredicted RBP14.88□□□□□ -0.03
YBX3-213ENST00000542641 DDX21Q9NR30 783 aaKnown RBP eCLIP14.88□□□□□ -0.03
YBX3-213ENST00000542641 C4BP0C0L5 1744 aa14.87□□□□□ -0.03
YBX3-213ENST00000542641 PROSER3Q2NL68 480 aa14.87□□□□□ -0.03
YBX3-213ENST00000542641 HYPKQ9NX55 129 aa14.87□□□□□ -0.03
YBX3-213ENST00000542641 RREB1Q92766 1687 aa14.87□□□□□ -0.03
YBX3-213ENST00000542641 COL5A3P25940 1745 aaPredicted RBP14.86□□□□□ -0.03
YBX3-213ENST00000542641 LAMB4A4D0S4 1761 aa14.86□□□□□ -0.03
YBX3-213ENST00000542641 PHF14O94880 888 aa14.86□□□□□ -0.03
YBX3-213ENST00000542641 RARSP54136 660 aaKnown RBP14.86□□□□□ -0.03
YBX3-213ENST00000542641 EIF5P55010 431 aaKnown RBP14.86□□□□□ -0.03
YBX3-213ENST00000542641 ALDH1L2Q3SY69 923 aa14.86□□□□□ -0.03
YBX3-213ENST00000542641 TRAPPC3LQ5T215 181 aa14.86□□□□□ -0.03
YBX3-213ENST00000542641 SMIM5Q71RC9 77 aa14.86□□□□□ -0.03
YBX3-213ENST00000542641 SSH1Q8WYL5 1049 aa14.86□□□□□ -0.03
YBX3-213ENST00000542641 ARXQ96QS3 562 aa14.86□□□□□ -0.03
YBX3-213ENST00000542641 TAF1LQ8IZX4 1826 aa14.86□□□□□ -0.03
YBX3-213ENST00000542641 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.85□□□□□ -0.03
YBX3-213ENST00000542641 SSFA2P28290 1259 aa14.85□□□□□ -0.03
YBX3-213ENST00000542641 AMIGO3Q86WK7 504 aa14.85□□□□□ -0.03
YBX3-213ENST00000542641 BCL2L13Q9BXK5 485 aa14.85□□□□□ -0.03
YBX3-213ENST00000542641 SMC4Q9NTJ3 1288 aa14.85□□□□□ -0.03
YBX3-213ENST00000542641 NUP188Q5SRE5 1749 aa14.84□□□□□ -0.03
YBX3-213ENST00000542641 A0A087WZG4 1122 aa14.84□□□□□ -0.03
YBX3-213ENST00000542641 AIMP1Q12904 312 aaKnown RBP14.84□□□□□ -0.03
YBX3-213ENST00000542641 LRP10Q7Z4F1 713 aa14.84□□□□□ -0.03
YBX3-213ENST00000542641 MRPL50Q8N5N7 158 aaKnown RBP14.84□□□□□ -0.03
YBX3-213ENST00000542641 FLAD1Q8NFF5 587 aa14.84□□□□□ -0.03
YBX3-213ENST00000542641 ARHGEF1Q92888 912 aaKnown RBP14.84□□□□□ -0.03
YBX3-213ENST00000542641 RFC4P35249 363 aa14.83□□□□□ -0.04
YBX3-213ENST00000542641 COPS6Q7L5N1 327 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms