RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 KIF13BQ9NQT8 1826 aa13.05□□□□□ -0.32
CHFR-219ENST00000541341 GNPATO15228 680 aa13.05□□□□□ -0.32
CHFR-219ENST00000541341 ITPK1Q13572 414 aa13.05□□□□□ -0.32
CHFR-219ENST00000541341 WDR63Q8IWG1 891 aa13.05□□□□□ -0.32
CHFR-219ENST00000541341 TMOD3Q9NYL9 352 aa13.05□□□□□ -0.32
CHFR-219ENST00000541341 SPG7Q9UQ90 795 aa13.05□□□□□ -0.32
CHFR-219ENST00000541341 IGSF1Q8N6C5 1336 aa13.05□□□□□ -0.32
CHFR-219ENST00000541341 LOC102724428A0A0B4J2F2 783 aa13.04□□□□□ -0.32
CHFR-219ENST00000541341 DDX11L8A8MPP1 907 aa13.04□□□□□ -0.32
CHFR-219ENST00000541341 ATP6V1AP38606 617 aa13.04□□□□□ -0.32
CHFR-219ENST00000541341 MTHFSP49914 203 aa13.04□□□□□ -0.32
CHFR-219ENST00000541341 SIK1P57059 783 aa13.04□□□□□ -0.32
CHFR-219ENST00000541341 SKOR2Q2VWA4 1001 aaPredicted RBP13.04□□□□□ -0.32
CHFR-219ENST00000541341 SMARCC1Q92922 1105 aaPredicted RBP13.04□□□□□ -0.32
CHFR-219ENST00000541341 NCAPD2Q15021 1401 aa13.04□□□□□ -0.32
CHFR-219ENST00000541341 BRCA1P38398 1863 aaKnown RBP13.04□□□□□ -0.32
CHFR-219ENST00000541341 CICQ96RK0 1608 aaPredicted RBP13.03□□□□□ -0.32
CHFR-219ENST00000541341 GOLGA6L3A6NEY3 463 aa13.03□□□□□ -0.32
CHFR-219ENST00000541341 CCDC27Q2M243 656 aa13.03□□□□□ -0.32
CHFR-219ENST00000541341 FLAD1Q8NFF5 587 aa13.03□□□□□ -0.32
CHFR-219ENST00000541341 CD2APQ9Y5K6 639 aa13.03□□□□□ -0.32
CHFR-219ENST00000541341 FRAT2O75474 233 aaPredicted RBP13.02□□□□□ -0.33
CHFR-219ENST00000541341 PHKG2P15735 406 aa13.02□□□□□ -0.33
CHFR-219ENST00000541341 MRE11P49959 708 aa13.02□□□□□ -0.33
CHFR-219ENST00000541341 EIF4A2Q14240 407 aaKnown RBP13.02□□□□□ -0.33
CHFR-219ENST00000541341 RBM42Q9BTD8 480 aaKnown RBP13.02□□□□□ -0.33
CHFR-219ENST00000541341 GPBP1L1Q9HC44 474 aaPredicted RBP13.02□□□□□ -0.33
CHFR-219ENST00000541341 BRPF3Q9ULD4 1205 aa13.02□□□□□ -0.33
CHFR-219ENST00000541341 RGS3P49796 1198 aa13.01□□□□□ -0.33
CHFR-219ENST00000541341 NKX1-1Q15270 411 aaPredicted RBP13.01□□□□□ -0.33
CHFR-219ENST00000541341 IFNL2Q8IZJ0 200 aa13.01□□□□□ -0.33
CHFR-219ENST00000541341 CFAP53Q96M91 514 aa13.01□□□□□ -0.33
CHFR-219ENST00000541341 MYH16Q9H6N6 1097 aa13.01□□□□□ -0.33
CHFR-219ENST00000541341 ATG3Q9NT62 314 aa13.01□□□□□ -0.33
CHFR-219ENST00000541341 CHMP5Q9NZZ3 219 aa13.01□□□□□ -0.33
CHFR-219ENST00000541341 SCN11AQ9UI33 1791 aa13.01□□□□□ -0.33
CHFR-219ENST00000541341 TJP1Q07157 1748 aa13□□□□□ -0.33
CHFR-219ENST00000541341 CIZ1Q9ULV3 898 aaPredicted RBP13□□□□□ -0.33
CHFR-219ENST00000541341 CCDC88AQ3V6T2 1871 aa12.99□□□□□ -0.33
CHFR-219ENST00000541341 KIF16BQ96L93 1317 aa12.99□□□□□ -0.33
CHFR-219ENST00000541341 MMP10P09238 476 aa12.99□□□□□ -0.33
CHFR-219ENST00000541341 SSFA2P28290 1259 aa12.99□□□□□ -0.33
CHFR-219ENST00000541341 TBC1D32Q96NH3 1257 aa12.99□□□□□ -0.33
CHFR-219ENST00000541341 SLC4A9Q96Q91 983 aa12.99□□□□□ -0.33
CHFR-219ENST00000541341 PNNQ9H307 717 aaKnown RBP12.99□□□□□ -0.33
CHFR-219ENST00000541341 RTN4Q9NQC3 1192 aaKnown RBP12.99□□□□□ -0.33
CHFR-219ENST00000541341 PLEKHG2Q9H7P9 1386 aa12.98□□□□□ -0.33
CHFR-219ENST00000541341 ARFGEF1Q9Y6D6 1849 aa12.98□□□□□ -0.33
CHFR-219ENST00000541341 IL13P35225 146 aa12.98□□□□□ -0.33
CHFR-219ENST00000541341 C20orf194Q5TEA3 1177 aa12.98□□□□□ -0.33
CHFR-219ENST00000541341 RUNDC1Q96C34 613 aa12.98□□□□□ -0.33
CHFR-219ENST00000541341 ZNF831Q5JPB2 1677 aa12.98□□□□□ -0.33
CHFR-219ENST00000541341 ADCY9O60503 1353 aa12.97□□□□□ -0.33
CHFR-219ENST00000541341 KDRP35968 1356 aa12.97□□□□□ -0.33
CHFR-219ENST00000541341 A0A0G2JLW4 131 aa12.97□□□□□ -0.33
CHFR-219ENST00000541341 DIAPH1O60610 1272 aaKnown RBP12.97□□□□□ -0.33
CHFR-219ENST00000541341 CLCN1P35523 988 aa12.97□□□□□ -0.33
CHFR-219ENST00000541341 AEBP1Q8IUX7 1158 aa12.97□□□□□ -0.33
CHFR-219ENST00000541341 DLG5Q8TDM6 1919 aa12.97□□□□□ -0.33
CHFR-219ENST00000541341 AFDNP55196 1824 aaKnown RBP12.97□□□□□ -0.33
CHFR-219ENST00000541341 PXDNLA1KZ92 1463 aa12.97□□□□□ -0.33
CHFR-219ENST00000541341 KDM6AO15550 1401 aaPredicted RBP12.96□□□□□ -0.33
CHFR-219ENST00000541341 SBF1O95248 1867 aa12.96□□□□□ -0.33
CHFR-219ENST00000541341 RRP9O43818 475 aaKnown RBP12.96□□□□□ -0.33
CHFR-219ENST00000541341 ZNF530Q6P9A1 599 aaPredicted RBP12.96□□□□□ -0.33
CHFR-219ENST00000541341 ANP32BQ92688 251 aaKnown RBP12.96□□□□□ -0.33
CHFR-219ENST00000541341 BCS1LQ9Y276 419 aa12.96□□□□□ -0.33
CHFR-219ENST00000541341 CACNA1SQ13698 1873 aa12.95□□□□□ -0.34
CHFR-219ENST00000541341 PTCD1O75127 700 aaKnown RBP12.95□□□□□ -0.34
CHFR-219ENST00000541341 TRAPPC3LQ5T215 181 aa12.95□□□□□ -0.34
CHFR-219ENST00000541341 ARHGEF1Q92888 912 aaKnown RBP12.95□□□□□ -0.34
CHFR-219ENST00000541341 GBP4Q96PP9 640 aa12.95□□□□□ -0.34
CHFR-219ENST00000541341 RTCBQ9Y3I0 505 aaKnown RBP12.95□□□□□ -0.34
CHFR-219ENST00000541341 APAF1O14727 1248 aa12.94□□□□□ -0.34
CHFR-219ENST00000541341 CABP4P57796 275 aa12.94□□□□□ -0.34
CHFR-219ENST00000541341 ARHGAP27Q6ZUM4 889 aa12.94□□□□□ -0.34
CHFR-219ENST00000541341 HSCBQ8IWL3 235 aa12.94□□□□□ -0.34
CHFR-219ENST00000541341 ZNF428Q96B54 188 aa12.94□□□□□ -0.34
CHFR-219ENST00000541341 ANTXR1Q9H6X2 564 aa12.94□□□□□ -0.34
CHFR-219ENST00000541341 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.94□□□□□ -0.34
CHFR-219ENST00000541341 SRP68Q9UHB9 627 aaKnown RBP12.94□□□□□ -0.34
CHFR-219ENST00000541341 FSD2A1L4K1 749 aa12.93□□□□□ -0.34
CHFR-219ENST00000541341 GOLGA6L22H0YM25 854 aa12.93□□□□□ -0.34
CHFR-219ENST00000541341 DPEP1P16444 411 aa12.93□□□□□ -0.34
CHFR-219ENST00000541341 MCM4P33991 863 aa12.93□□□□□ -0.34
CHFR-219ENST00000541341 RFC4P35249 363 aa12.93□□□□□ -0.34
CHFR-219ENST00000541341 IPO8O15397 1037 aaKnown RBP12.92□□□□□ -0.34
CHFR-219ENST00000541341 HSP90AA1P07900 732 aaKnown RBP12.92□□□□□ -0.34
CHFR-219ENST00000541341 HMGB2P26583 209 aaKnown RBP12.92□□□□□ -0.34
CHFR-219ENST00000541341 SLC4A3P48751 1232 aa12.92□□□□□ -0.34
CHFR-219ENST00000541341 PLEKHO1Q53GL0 409 aaPredicted RBP12.92□□□□□ -0.34
CHFR-219ENST00000541341 WWC1Q8IX03 1113 aa12.92□□□□□ -0.34
CHFR-219ENST00000541341 TRIM44Q96DX7 344 aaPredicted RBP12.92□□□□□ -0.34
CHFR-219ENST00000541341 WDR90Q96KV7 1748 aa12.91□□□□□ -0.34
CHFR-219ENST00000541341 C10orf71Q711Q0 1435 aa12.91□□□□□ -0.34
CHFR-219ENST00000541341 KIF3CO14782 793 aa12.91□□□□□ -0.34
CHFR-219ENST00000541341 FCHSD2O94868 740 aa12.91□□□□□ -0.34
CHFR-219ENST00000541341 TPM2P07951 284 aa12.91□□□□□ -0.34
CHFR-219ENST00000541341 GYS1P13807 737 aa12.91□□□□□ -0.34
CHFR-219ENST00000541341 HSPA6P17066 643 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms