RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 CYP27B1O15528 508 aa11.32□□□□□ -0.6
CHD4-208ENST00000540960 FKBP8Q14318 412 aa11.32□□□□□ -0.6
CHD4-208ENST00000540960 SRP68Q9UHB9 627 aaKnown RBP11.32□□□□□ -0.6
CHD4-208ENST00000540960 MYH14Q7Z406 1995 aaKnown RBP11.32□□□□□ -0.6
CHD4-208ENST00000540960 DLEC1Q9Y238 1755 aa11.31□□□□□ -0.6
CHD4-208ENST00000540960 ST20-MTHFSA0A0A6YYL1 179 aa11.31□□□□□ -0.6
CHD4-208ENST00000540960 FBLN1P23142 703 aa11.31□□□□□ -0.6
CHD4-208ENST00000540960 RFC4P35249 363 aa11.31□□□□□ -0.6
CHD4-208ENST00000540960 NBPF6Q5VWK0 638 aa11.31□□□□□ -0.6
CHD4-208ENST00000540960 NBPF4Q96M43 638 aa11.31□□□□□ -0.6
CHD4-208ENST00000540960 FER1L6Q2WGJ9 1857 aa11.31□□□□□ -0.6
CHD4-208ENST00000540960 CENPJQ9HC77 1338 aaPredicted RBP11.31□□□□□ -0.6
CHD4-208ENST00000540960 SZT2Q5T011 3432 aa11.31□□□□□ -0.6
CHD4-208ENST00000540960 ADAMTS7Q9UKP4 1686 aa11.3□□□□□ -0.6
CHD4-208ENST00000540960 SLC17A8Q8NDX2 589 aa11.3□□□□□ -0.6
CHD4-208ENST00000540960 SLC4A9Q96Q91 983 aa11.3□□□□□ -0.6
CHD4-208ENST00000540960 AFDNP55196 1824 aaKnown RBP11.3□□□□□ -0.6
CHD4-208ENST00000540960 MON2Q7Z3U7 1717 aa11.29□□□□□ -0.6
CHD4-208ENST00000540960 POLRMTO00411 1230 aaKnown RBP11.29□□□□□ -0.6
CHD4-208ENST00000540960 ECE1P42892 770 aa11.29□□□□□ -0.6
CHD4-208ENST00000540960 NBPF15Q8N660 670 aa11.29□□□□□ -0.6
CHD4-208ENST00000540960 TTLL6Q8N841 843 aa11.29□□□□□ -0.6
CHD4-208ENST00000540960 DDX21Q9NR30 783 aaKnown RBP eCLIP11.29□□□□□ -0.6
CHD4-208ENST00000540960 A0A0C4DFX4 3053 aa11.29□□□□□ -0.6
CHD4-208ENST00000540960 IQCA1LA6NCM1 817 aa11.28□□□□□ -0.6
CHD4-208ENST00000540960 MAP2K2P36507 400 aa11.28□□□□□ -0.6
CHD4-208ENST00000540960 CST9Q5W186 159 aa11.28□□□□□ -0.6
CHD4-208ENST00000540960 L3MBTL3Q96JM7 780 aaPredicted RBP11.28□□□□□ -0.6
CHD4-208ENST00000540960 RPS6KA4O75676 772 aa11.27□□□□□ -0.61
CHD4-208ENST00000540960 ZIC5Q96T25 663 aa11.27□□□□□ -0.61
CHD4-208ENST00000540960 ATG3Q9NT62 314 aa11.27□□□□□ -0.61
CHD4-208ENST00000540960 PCDH11XQ9BZA7 1347 aa11.27□□□□□ -0.61
CHD4-208ENST00000540960 PCDH11YQ9BZA8 1340 aa11.27□□□□□ -0.61
CHD4-208ENST00000540960 COL5A3P25940 1745 aaPredicted RBP11.26□□□□□ -0.61
CHD4-208ENST00000540960 CD163L1Q9NR16 1453 aa11.26□□□□□ -0.61
CHD4-208ENST00000540960 TRPM7Q96QT4 1865 aa11.26□□□□□ -0.61
CHD4-208ENST00000540960 CA12O43570 354 aa11.26□□□□□ -0.61
CHD4-208ENST00000540960 TM4SF1P30408 202 aa11.26□□□□□ -0.61
CHD4-208ENST00000540960 HOXC9P31274 260 aa11.26□□□□□ -0.61
CHD4-208ENST00000540960 RALBP1Q15311 655 aa11.26□□□□□ -0.61
CHD4-208ENST00000540960 CIAPIN1Q6FI81 312 aa11.26□□□□□ -0.61
CHD4-208ENST00000540960 PIAS4Q8N2W9 510 aaPredicted RBP11.26□□□□□ -0.61
CHD4-208ENST00000540960 PUS7Q96PZ0 661 aaKnown RBP11.26□□□□□ -0.61
CHD4-208ENST00000540960 SBNO2Q9Y2G9 1366 aa11.26□□□□□ -0.61
CHD4-208ENST00000540960 C21orf2O43822 256 aa11.25□□□□□ -0.61
CHD4-208ENST00000540960 TATP17735 454 aaPredicted RBP11.25□□□□□ -0.61
CHD4-208ENST00000540960 EPHX2P34913 555 aa11.25□□□□□ -0.61
CHD4-208ENST00000540960 RAPGEF4Q8WZA2 1011 aa11.25□□□□□ -0.61
CHD4-208ENST00000540960 TLL2Q9Y6L7 1015 aa11.25□□□□□ -0.61
CHD4-208ENST00000540960 CGNL1Q0VF96 1302 aa11.25□□□□□ -0.61
CHD4-208ENST00000540960 TRAF5O00463 557 aa11.24□□□□□ -0.61
CHD4-208ENST00000540960 RC3H1Q5TC82 1133 aaKnown RBP11.24□□□□□ -0.61
CHD4-208ENST00000540960 C2CD5Q86YS7 1000 aa11.24□□□□□ -0.61
CHD4-208ENST00000540960 PRKRIP1Q9H875 184 aaPredicted RBP11.24□□□□□ -0.61
CHD4-208ENST00000540960 MAP3K19Q56UN5 1328 aa11.24□□□□□ -0.61
CHD4-208ENST00000540960 KDRP35968 1356 aa11.24□□□□□ -0.61
CHD4-208ENST00000540960 BRPF1P55201 1214 aaPredicted RBP11.23□□□□□ -0.61
CHD4-208ENST00000540960 TESK2Q96S53 571 aa11.23□□□□□ -0.61
CHD4-208ENST00000540960 POLR3GLQ9BT43 218 aa11.23□□□□□ -0.61
CHD4-208ENST00000540960 HACL1Q9UJ83 578 aa11.23□□□□□ -0.61
CHD4-208ENST00000540960 ZNF541Q9H0D2 1346 aa11.23□□□□□ -0.61
CHD4-208ENST00000540960 USP42Q9H9J4 1324 aaKnown RBP11.23□□□□□ -0.61
CHD4-208ENST00000540960 CACNA1SQ13698 1873 aa11.22□□□□□ -0.61
CHD4-208ENST00000540960 NKX1-1Q15270 411 aaPredicted RBP11.22□□□□□ -0.61
CHD4-208ENST00000540960 RNF123Q5XPI4 1314 aa11.22□□□□□ -0.61
CHD4-208ENST00000540960 EVC2Q86UK5 1308 aa11.22□□□□□ -0.61
CHD4-208ENST00000540960 CARMIL3Q8ND23 1372 aa11.22□□□□□ -0.61
CHD4-208ENST00000540960 YTHDC1Q96MU7 727 aaKnown RBP11.22□□□□□ -0.61
CHD4-208ENST00000540960 PITPNM2Q9BZ72 1349 aa11.22□□□□□ -0.61
CHD4-208ENST00000540960 TMOD3Q9NYL9 352 aa11.22□□□□□ -0.61
CHD4-208ENST00000540960 NRXN2Q9P2S2 1712 aa11.22□□□□□ -0.61
CHD4-208ENST00000540960 MKI67P46013 3256 aaKnown RBP11.21□□□□□ -0.61
CHD4-208ENST00000540960 CNTNAP4Q9C0A0 1308 aa11.21□□□□□ -0.61
CHD4-208ENST00000540960 AMPHP49418 695 aa11.21□□□□□ -0.61
CHD4-208ENST00000540960 RBM42Q9BTD8 480 aaKnown RBP11.21□□□□□ -0.61
CHD4-208ENST00000540960 TAOK3Q9H2K8 898 aa11.21□□□□□ -0.61
CHD4-208ENST00000540960 HPS5Q9UPZ3 1129 aa11.21□□□□□ -0.61
CHD4-208ENST00000540960 TRIOBPQ9H2D6 2365 aa11.2□□□□□ -0.62
CHD4-208ENST00000540960 SAPCD2Q86UD0 394 aa11.2□□□□□ -0.62
CHD4-208ENST00000540960 COLQQ9Y215 455 aaPredicted RBP11.2□□□□□ -0.62
CHD4-208ENST00000540960 SLX4Q8IY92 1834 aa11.2□□□□□ -0.62
CHD4-208ENST00000540960 ANKRD31Q8N7Z5 1873 aa11.19□□□□□ -0.62
CHD4-208ENST00000540960 LTBP3Q9NS15 1303 aa11.19□□□□□ -0.62
CHD4-208ENST00000540960 H0YIN7 160 aa11.19□□□□□ -0.62
CHD4-208ENST00000540960 NFIXQ14938 502 aa11.19□□□□□ -0.62
CHD4-208ENST00000540960 PNMA8AQ86V59 439 aaPredicted RBP11.19□□□□□ -0.62
CHD4-208ENST00000540960 ZNF622Q969S3 477 aaKnown RBP eCLIP11.19□□□□□ -0.621e-11■■□□□ 12.2
CHD4-208ENST00000540960 ZNF831Q5JPB2 1677 aa11.19□□□□□ -0.62
CHD4-208ENST00000540960 COL6A3P12111 3177 aa11.19□□□□□ -0.62
CHD4-208ENST00000540960 USPL1Q5W0Q7 1092 aa11.18□□□□□ -0.62
CHD4-208ENST00000540960 SCN11AQ9UI33 1791 aa11.18□□□□□ -0.62
CHD4-208ENST00000540960 COL11A2P13942 1736 aaPredicted RBP11.18□□□□□ -0.62
CHD4-208ENST00000540960 CTU1Q7Z7A3 348 aaKnown RBP11.17□□□□□ -0.62
CHD4-208ENST00000540960 MRS2Q9HD23 443 aa11.17□□□□□ -0.62
CHD4-208ENST00000540960 KNSTRNQ9Y448 316 aa11.17□□□□□ -0.62
CHD4-208ENST00000540960 SMG6Q86US8 1419 aaKnown RBP11.17□□□□□ -0.62
CHD4-208ENST00000540960 NPC1L1Q9UHC9 1359 aa11.16□□□□□ -0.62
CHD4-208ENST00000540960 SERPINB2P05120 415 aa11.16□□□□□ -0.62
CHD4-208ENST00000540960 CRKLP46109 303 aaKnown RBP11.16□□□□□ -0.62
CHD4-208ENST00000540960 CCDC24Q8N4L8 307 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms