RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 PDE1AP54750 535 aa17.04■□□□□ 0.32
RTN3-210ENST00000540798 CABLES1Q8TDN4 633 aa17.04■□□□□ 0.32
RTN3-210ENST00000540798 SLC52A2Q9HAB3 445 aa17.04■□□□□ 0.32
RTN3-210ENST00000540798 NLRP2Q9NX02 1062 aa17.04■□□□□ 0.32
RTN3-210ENST00000540798 SPG7Q9UQ90 795 aa17.04■□□□□ 0.32
RTN3-210ENST00000540798 PI4KAP2A4QPH2 592 aa17.03■□□□□ 0.32
RTN3-210ENST00000540798 PI4KAP1Q8N8J0 262 aa17.03■□□□□ 0.32
RTN3-210ENST00000540798 LRRCC1Q9C099 1032 aa17.03■□□□□ 0.32
RTN3-210ENST00000540798 EXOC6BQ9Y2D4 811 aa17.03■□□□□ 0.32
RTN3-210ENST00000540798 SOS2Q07890 1332 aaPredicted RBP17.02■□□□□ 0.32
RTN3-210ENST00000540798 NHSL1Q5SYE7 1610 aa17.02■□□□□ 0.32
RTN3-210ENST00000540798 APBB1O00213 710 aa17.02■□□□□ 0.31
RTN3-210ENST00000540798 STAP2Q9UGK3 403 aa17.02■□□□□ 0.31
RTN3-210ENST00000540798 LAMB4A4D0S4 1761 aa17.02■□□□□ 0.31
RTN3-210ENST00000540798 SLKQ9H2G2 1235 aaPredicted RBP17.01■□□□□ 0.31
RTN3-210ENST00000540798 FRAT2O75474 233 aaPredicted RBP17.01■□□□□ 0.31
RTN3-210ENST00000540798 DDIT3P35638 169 aa17.01■□□□□ 0.31
RTN3-210ENST00000540798 PROSER3Q2NL68 480 aa17.01■□□□□ 0.31
RTN3-210ENST00000540798 HYPKQ9NX55 129 aa17.01■□□□□ 0.31
RTN3-210ENST00000540798 PRAMEF22A3QJZ6 481 aa17.01■□□□□ 0.31
RTN3-210ENST00000540798 PDIA6Q15084 440 aa17.01■□□□□ 0.31
RTN3-210ENST00000540798 ZNF790Q6PG37 636 aa17.01■□□□□ 0.31
RTN3-210ENST00000540798 HSCBQ8IWL3 235 aa17.01■□□□□ 0.31
RTN3-210ENST00000540798 IFNL2Q8IZJ0 200 aa17.01■□□□□ 0.31
RTN3-210ENST00000540798 ALDH1L1O75891 902 aa17■□□□□ 0.31
RTN3-210ENST00000540798 ANXA1P04083 346 aa17■□□□□ 0.31
RTN3-210ENST00000540798 KSR2Q6VAB6 950 aa17■□□□□ 0.31
RTN3-210ENST00000540798 AOX1Q06278 1338 aa17■□□□□ 0.31
RTN3-210ENST00000540798 NBPF7P0C2Y1 421 aaPredicted RBP17■□□□□ 0.31
RTN3-210ENST00000540798 MTX1Q13505 466 aa17■□□□□ 0.31
RTN3-210ENST00000540798 USP26Q9BXU7 913 aa17■□□□□ 0.31
RTN3-210ENST00000540798 SHANK3Q9BYB0 1731 aa17■□□□□ 0.31
RTN3-210ENST00000540798 RAB11FIP3O75154 756 aa16.99■□□□□ 0.31
RTN3-210ENST00000540798 CHRNA2Q15822 529 aa16.99■□□□□ 0.31
RTN3-210ENST00000540798 DDX21Q9NR30 783 aaKnown RBP eCLIP16.99■□□□□ 0.31
RTN3-210ENST00000540798 PPP1R42Q7Z4L9 355 aa16.99■□□□□ 0.31
RTN3-210ENST00000540798 UBR2Q8IWV8 1755 aa16.99■□□□□ 0.31
RTN3-210ENST00000540798 PAPPAQ13219 1627 aa16.99■□□□□ 0.31
RTN3-210ENST00000540798 CYP27B1O15528 508 aa16.99■□□□□ 0.31
RTN3-210ENST00000540798 DCAF5Q96JK2 942 aa16.99■□□□□ 0.31
RTN3-210ENST00000540798 MX1P20591 662 aa16.98■□□□□ 0.31
RTN3-210ENST00000540798 UTYO14607 1347 aa16.98■□□□□ 0.31
RTN3-210ENST00000540798 MAP3K2Q9Y2U5 619 aa16.98■□□□□ 0.31
RTN3-210ENST00000540798 COL5A2P05997 1499 aaPredicted RBP16.97■□□□□ 0.31
RTN3-210ENST00000540798 CSB-PGBD3P0DP91 1061 aa16.97■□□□□ 0.31
RTN3-210ENST00000540798 CASC1Q6TDU7 716 aa16.97■□□□□ 0.31
RTN3-210ENST00000540798 SLAIN2Q9P270 581 aa16.96■□□□□ 0.31
RTN3-210ENST00000540798 NFATC2IPQ8NCF5 419 aa16.96■□□□□ 0.31
RTN3-210ENST00000540798 WDR17Q8IZU2 1322 aa16.96■□□□□ 0.31
RTN3-210ENST00000540798 ZNF335Q9H4Z2 1342 aaPredicted RBP16.96■□□□□ 0.31
RTN3-210ENST00000540798 AK9Q5TCS8 1911 aa16.96■□□□□ 0.31
RTN3-210ENST00000540798 HSP90AB1P08238 724 aaKnown RBP16.96■□□□□ 0.31
RTN3-210ENST00000540798 CHMP5Q9NZZ3 219 aa16.96■□□□□ 0.31
RTN3-210ENST00000540798 SLC39A6Q13433 755 aa16.95■□□□□ 0.3
RTN3-210ENST00000540798 LRP10Q7Z4F1 713 aa16.95■□□□□ 0.3
RTN3-210ENST00000540798 CD2BP2O95400 341 aaKnown RBP16.94■□□□□ 0.3
RTN3-210ENST00000540798 LINS1Q8NG48 757 aa16.94■□□□□ 0.3
RTN3-210ENST00000540798 SRGAP3O43295 1099 aa16.94■□□□□ 0.3
RTN3-210ENST00000540798 ARFGEF2Q9Y6D5 1785 aa16.94■□□□□ 0.3
RTN3-210ENST00000540798 ERC2O15083 957 aa16.93■□□□□ 0.3
RTN3-210ENST00000540798 RABEP1Q15276 862 aa16.93■□□□□ 0.3
RTN3-210ENST00000540798 RHPN1Q8TCX5 695 aa16.93■□□□□ 0.3
RTN3-210ENST00000540798 USP42Q9H9J4 1324 aaKnown RBP16.93■□□□□ 0.3
RTN3-210ENST00000540798 DDX58O95786 925 aaKnown RBP16.93■□□□□ 0.3
RTN3-210ENST00000540798 ZNF496Q96IT1 587 aaPredicted RBP16.93■□□□□ 0.3
RTN3-210ENST00000540798 REC8O95072 547 aa16.92■□□□□ 0.3
RTN3-210ENST00000540798 KIF1BPQ96EK5 621 aa16.92■□□□□ 0.3
RTN3-210ENST00000540798 RBM42Q9BTD8 480 aaKnown RBP16.92■□□□□ 0.3
RTN3-210ENST00000540798 PODXL2Q9NZ53 605 aa16.92■□□□□ 0.3
RTN3-210ENST00000540798 K7ELQ4 463 aaPredicted RBP16.92■□□□□ 0.3
RTN3-210ENST00000540798 SURF6O75683 361 aaKnown RBP16.92■□□□□ 0.3
RTN3-210ENST00000540798 HDAC5Q9UQL6 1122 aa16.92■□□□□ 0.3
RTN3-210ENST00000540798 HSP90AB4PQ58FF6 505 aa16.92■□□□□ 0.3
RTN3-210ENST00000540798 TSHZ3Q63HK5 1081 aa16.92■□□□□ 0.3
RTN3-210ENST00000540798 SPRYD3Q8NCJ5 442 aa16.91■□□□□ 0.3
RTN3-210ENST00000540798 AFDNP55196 1824 aaKnown RBP16.91■□□□□ 0.3
RTN3-210ENST00000540798 CWF19L2Q2TBE0 894 aaKnown RBP16.91■□□□□ 0.3
RTN3-210ENST00000540798 CIZ1Q9ULV3 898 aaPredicted RBP16.91■□□□□ 0.3
RTN3-210ENST00000540798 SNRPA1P09661 255 aaKnown RBP16.9■□□□□ 0.3
RTN3-210ENST00000540798 GSE1Q14687 1217 aa16.9■□□□□ 0.3
RTN3-210ENST00000540798 PI4K2BQ8TCG2 481 aa16.9■□□□□ 0.3
RTN3-210ENST00000540798 KAZALD1Q96I82 304 aa16.9■□□□□ 0.3
RTN3-210ENST00000540798 ESYT1Q9BSJ8 1104 aa16.9■□□□□ 0.3
RTN3-210ENST00000540798 PCDH11XQ9BZA7 1347 aa16.9■□□□□ 0.3
RTN3-210ENST00000540798 PCDH11YQ9BZA8 1340 aa16.9■□□□□ 0.3
RTN3-210ENST00000540798 KCPQ6ZWJ8 1503 aa16.9■□□□□ 0.3
RTN3-210ENST00000540798 GRM8O00222 908 aa16.9■□□□□ 0.3
RTN3-210ENST00000540798 IGKV5-2P06315 115 aa16.9■□□□□ 0.3
RTN3-210ENST00000540798 CHMLP26374 656 aa16.9■□□□□ 0.3
RTN3-210ENST00000540798 NKX1-1Q15270 411 aaPredicted RBP16.9■□□□□ 0.3
RTN3-210ENST00000540798 IL17RAQ96F46 866 aa16.9■□□□□ 0.3
RTN3-210ENST00000540798 FMNL2Q96PY5 1086 aa16.9■□□□□ 0.3
RTN3-210ENST00000540798 PRDM11Q9NQV5 511 aa16.9■□□□□ 0.3
RTN3-210ENST00000540798 C9orf78Q9NZ63 289 aaPredicted RBP16.9■□□□□ 0.3
RTN3-210ENST00000540798 NUP188Q5SRE5 1749 aa16.89■□□□□ 0.29
RTN3-210ENST00000540798 IL1RAPL2Q9NP60 686 aa16.89■□□□□ 0.29
RTN3-210ENST00000540798 TOGARAM1Q9Y4F4 1720 aa16.89■□□□□ 0.29
RTN3-210ENST00000540798 LARP1Q6PKG0 1096 aaKnown RBP16.89■□□□□ 0.29
RTN3-210ENST00000540798 CARD10Q9BWT7 1032 aa16.88■□□□□ 0.29
RTN3-210ENST00000540798 TTC5Q8N0Z6 440 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 115.6 ms