RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 ZBTB1Q9Y2K1 713 aa16.22■□□□□ 0.19
CBX3P4-202ENST00000540428 COL15A1P39059 1388 aa16.22■□□□□ 0.19
CBX3P4-202ENST00000540428 ARFGEF1Q9Y6D6 1849 aa16.2■□□□□ 0.18
CBX3P4-202ENST00000540428 CHRNA5P30532 468 aa16.2■□□□□ 0.18
CBX3P4-202ENST00000540428 NFIXQ14938 502 aa16.2■□□□□ 0.18
CBX3P4-202ENST00000540428 TTC5Q8N0Z6 440 aa16.2■□□□□ 0.18
CBX3P4-202ENST00000540428 GAS2L2Q8NHY3 880 aa16.2■□□□□ 0.18
CBX3P4-202ENST00000540428 COL3A1P02461 1466 aaPredicted RBP16.19■□□□□ 0.18
CBX3P4-202ENST00000540428 APLP1P51693 650 aa16.19■□□□□ 0.18
CBX3P4-202ENST00000540428 BCL2L12Q9HB09 334 aa16.19■□□□□ 0.18
CBX3P4-202ENST00000540428 NMRK2Q9NPI5 230 aa16.19■□□□□ 0.18
CBX3P4-202ENST00000540428 STARD3NLO95772 234 aa16.18■□□□□ 0.18
CBX3P4-202ENST00000540428 IFFO2Q5TF58 517 aa16.18■□□□□ 0.18
CBX3P4-202ENST00000540428 KDM2BQ8NHM5 1336 aa16.18■□□□□ 0.18
CBX3P4-202ENST00000540428 A0A087WZG4 1122 aa16.17■□□□□ 0.18
CBX3P4-202ENST00000540428 GNAT3A8MTJ3 354 aa16.17■□□□□ 0.18
CBX3P4-202ENST00000540428 SERPINB2P05120 415 aa16.17■□□□□ 0.18
CBX3P4-202ENST00000540428 EIF5P55010 431 aaKnown RBP16.17■□□□□ 0.18
CBX3P4-202ENST00000540428 TEFQ10587 303 aa16.17■□□□□ 0.18
CBX3P4-202ENST00000540428 RBM46Q8TBY0 533 aaKnown RBP16.17■□□□□ 0.18
CBX3P4-202ENST00000540428 TEX13AQ9BXU3 409 aaPredicted RBP16.17■□□□□ 0.18
CBX3P4-202ENST00000540428 RNF181Q9P0P0 153 aa16.17■□□□□ 0.18
CBX3P4-202ENST00000540428 ZC3H4Q9UPT8 1303 aaKnown RBP16.17■□□□□ 0.18
CBX3P4-202ENST00000540428 U2SURPO15042 1029 aaKnown RBP16.16■□□□□ 0.18
CBX3P4-202ENST00000540428 CANXP27824 592 aaKnown RBP16.16■□□□□ 0.18
CBX3P4-202ENST00000540428 ZNF790Q6PG37 636 aa16.16■□□□□ 0.18
CBX3P4-202ENST00000540428 IL17REQ8NFR9 667 aa16.16■□□□□ 0.18
CBX3P4-202ENST00000540428 NRXN2Q9P2S2 1712 aa16.16■□□□□ 0.18
CBX3P4-202ENST00000540428 UBR2Q8IWV8 1755 aa16.15■□□□□ 0.18
CBX3P4-202ENST00000540428 HEG1Q9ULI3 1381 aa16.15■□□□□ 0.18
CBX3P4-202ENST00000540428 C16orf71Q8IYS4 520 aaPredicted RBP16.15■□□□□ 0.18
CBX3P4-202ENST00000540428 ZNF496Q96IT1 587 aaPredicted RBP16.15■□□□□ 0.18
CBX3P4-202ENST00000540428 FSTL1Q12841 308 aa16.14■□□□□ 0.17
CBX3P4-202ENST00000540428 PDZRN3Q9UPQ7 1066 aa16.14■□□□□ 0.17
CBX3P4-202ENST00000540428 CEMIPQ8WUJ3 1361 aa16.13■□□□□ 0.17
CBX3P4-202ENST00000540428 IL6STP40189 918 aaPredicted RBP16.13■□□□□ 0.17
CBX3P4-202ENST00000540428 TTLL6Q8N841 843 aa16.13■□□□□ 0.17
CBX3P4-202ENST00000540428 FMNL2Q96PY5 1086 aa16.13■□□□□ 0.17
CBX3P4-202ENST00000540428 VIRMAQ69YN4 1812 aaKnown RBP16.12■□□□□ 0.17
CBX3P4-202ENST00000540428 H0YIN7 160 aa16.12■□□□□ 0.17
CBX3P4-202ENST00000540428 C2CD5Q86YS7 1000 aa16.12■□□□□ 0.17
CBX3P4-202ENST00000540428 DNAJC5GQ8N7S2 189 aa16.12■□□□□ 0.17
CBX3P4-202ENST00000540428 CFAP53Q96M91 514 aa16.12■□□□□ 0.17
CBX3P4-202ENST00000540428 AFDNP55196 1824 aaKnown RBP16.11■□□□□ 0.17
CBX3P4-202ENST00000540428 LMNB1P20700 586 aa16.11■□□□□ 0.17
CBX3P4-202ENST00000540428 RASSF7Q02833 373 aa16.1■□□□□ 0.17
CBX3P4-202ENST00000540428 TBC1D9BQ66K14 1250 aa16.1■□□□□ 0.17
CBX3P4-202ENST00000540428 BICDL1Q6ZP65 573 aa16.1■□□□□ 0.17
CBX3P4-202ENST00000540428 BRIP1Q9BX63 1249 aa16.1■□□□□ 0.17
CBX3P4-202ENST00000540428 RSPH6AQ9H0K4 717 aa16.1■□□□□ 0.17
CBX3P4-202ENST00000540428 NUDCQ9Y266 331 aa16.1■□□□□ 0.17
CBX3P4-202ENST00000540428 CARMIL3Q8ND23 1372 aa16.1■□□□□ 0.17
CBX3P4-202ENST00000540428 BTBD11A6QL63 1104 aa16.09■□□□□ 0.17
CBX3P4-202ENST00000540428 PRKAR2BP31323 418 aa16.09■□□□□ 0.17
CBX3P4-202ENST00000540428 PDE6BP35913 854 aa16.09■□□□□ 0.17
CBX3P4-202ENST00000540428 CNGB1Q14028 1251 aaPredicted RBP16.09■□□□□ 0.17
CBX3P4-202ENST00000540428 NPM2Q86SE8 214 aaKnown RBP16.09■□□□□ 0.17
CBX3P4-202ENST00000540428 PHACTR3Q96KR7 559 aa16.09■□□□□ 0.17
CBX3P4-202ENST00000540428 RRAGCQ9HB90 399 aa16.09■□□□□ 0.17
CBX3P4-202ENST00000540428 DLEC1Q9Y238 1755 aa16.08■□□□□ 0.17
CBX3P4-202ENST00000540428 GLTPD2A6NH11 291 aa16.08■□□□□ 0.16
CBX3P4-202ENST00000540428 TBC1D2BQ9UPU7 963 aa16.08■□□□□ 0.16
CBX3P4-202ENST00000540428 SIPA1L3O60292 1781 aaPredicted RBP16.08■□□□□ 0.16
CBX3P4-202ENST00000540428 NFKBIEO00221 500 aa16.07■□□□□ 0.16
CBX3P4-202ENST00000540428 PRR5LQ6MZQ0 368 aa16.07■□□□□ 0.16
CBX3P4-202ENST00000540428 SMC1BQ8NDV3 1235 aa16.07■□□□□ 0.16
CBX3P4-202ENST00000540428 ZNF330Q9Y3S2 320 aaPredicted RBP16.07■□□□□ 0.16
CBX3P4-202ENST00000540428 SCN7AQ01118 1682 aa16.07■□□□□ 0.16
CBX3P4-202ENST00000540428 TNRC6CQ9HCJ0 1690 aaKnown RBP16.07■□□□□ 0.16
CBX3P4-202ENST00000540428 SBF1O95248 1867 aa16.07■□□□□ 0.16
CBX3P4-202ENST00000540428 CAMTA2O94983 1202 aa16.06■□□□□ 0.16
CBX3P4-202ENST00000540428 A1BGP04217 495 aa16.06■□□□□ 0.16
CBX3P4-202ENST00000540428 PRELPP51888 382 aa16.06■□□□□ 0.16
CBX3P4-202ENST00000540428 SETDB2Q96T68 719 aa16.06■□□□□ 0.16
CBX3P4-202ENST00000540428 KCNQ3O43525 872 aa16.05■□□□□ 0.16
CBX3P4-202ENST00000540428 VEGFAP15692 232 aaPredicted RBP16.05■□□□□ 0.16
CBX3P4-202ENST00000540428 CNBD1Q8NA66 436 aa16.05■□□□□ 0.16
CBX3P4-202ENST00000540428 RTF1Q92541 710 aaKnown RBP16.05■□□□□ 0.16
CBX3P4-202ENST00000540428 KLRG1Q96E93 195 aa16.05■□□□□ 0.16
CBX3P4-202ENST00000540428 HTATSF1O43719 755 aaKnown RBP16.04■□□□□ 0.16
CBX3P4-202ENST00000540428 SNRPA1P09661 255 aaKnown RBP16.04■□□□□ 0.16
CBX3P4-202ENST00000540428 U2AF1L5P0DN76 240 aaPredicted RBP16.04■□□□□ 0.16
CBX3P4-202ENST00000540428 PPP2R1AP30153 589 aa16.04■□□□□ 0.16
CBX3P4-202ENST00000540428 U2AF1Q01081 240 aaKnown RBP eCLIP16.04■□□□□ 0.16
CBX3P4-202ENST00000540428 CLEC4GQ6UXB4 293 aa16.04■□□□□ 0.16
CBX3P4-202ENST00000540428 DZIP3Q86Y13 1208 aaKnown RBP16.04■□□□□ 0.16
CBX3P4-202ENST00000540428 ZNF622Q969S3 477 aaKnown RBP eCLIP16.04■□□□□ 0.16
CBX3P4-202ENST00000540428 USP16Q9Y5T5 823 aa16.04■□□□□ 0.16
CBX3P4-202ENST00000540428 WDR90Q96KV7 1748 aa16.04■□□□□ 0.16
CBX3P4-202ENST00000540428 LTBP3Q9NS15 1303 aa16.03■□□□□ 0.16
CBX3P4-202ENST00000540428 RGL2O15211 777 aa16.03■□□□□ 0.16
CBX3P4-202ENST00000540428 ST5P78524 1137 aa16.03■□□□□ 0.16
CBX3P4-202ENST00000540428 JMYQ8N9B5 988 aa16.03■□□□□ 0.16
CBX3P4-202ENST00000540428 CNKSR1Q969H4 720 aa16.03■□□□□ 0.16
CBX3P4-202ENST00000540428 NPHP1O15259 732 aa16.02■□□□□ 0.16
CBX3P4-202ENST00000540428 C21orf2O43822 256 aa16.02■□□□□ 0.16
CBX3P4-202ENST00000540428 STYK1Q6J9G0 422 aa16.02■□□□□ 0.16
CBX3P4-202ENST00000540428 DPY19L2Q6NUT2 758 aa16.02■□□□□ 0.16
CBX3P4-202ENST00000540428 ZNF652Q9Y2D9 606 aa16.02■□□□□ 0.16
CBX3P4-202ENST00000540428 SRGNP10124 158 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms