RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 MCM4P33991 863 aa12.1□□□□□ -0.47
TRAF1-202ENST00000540010 RGPD1P0DJD0 1748 aa12.1□□□□□ -0.47
TRAF1-202ENST00000540010 GPATCH3Q96I76 525 aa12.1□□□□□ -0.47
TRAF1-202ENST00000540010 PHAXQ9H814 394 aaKnown RBP12.1□□□□□ -0.47
TRAF1-202ENST00000540010 SPATA31A3Q5VYP0 1347 aa12.1□□□□□ -0.47
TRAF1-202ENST00000540010 PRPF40AO75400 957 aaKnown RBP12.1□□□□□ -0.47
TRAF1-202ENST00000540010 AIMP1Q12904 312 aaKnown RBP12.09□□□□□ -0.47
TRAF1-202ENST00000540010 CEP85Q6P2H3 762 aa12.09□□□□□ -0.47
TRAF1-202ENST00000540010 SRCIN1Q9C0H9 1055 aa12.09□□□□□ -0.47
TRAF1-202ENST00000540010 DCCP43146 1447 aa12.09□□□□□ -0.47
TRAF1-202ENST00000540010 VPS37CA5D8V6 355 aaPredicted RBP12.09□□□□□ -0.47
TRAF1-202ENST00000540010 CDC45O75419 566 aa12.09□□□□□ -0.47
TRAF1-202ENST00000540010 SIRT2Q8IXJ6 389 aa12.09□□□□□ -0.47
TRAF1-202ENST00000540010 IFNL2Q8IZJ0 200 aa12.09□□□□□ -0.47
TRAF1-202ENST00000540010 NEK4P51957 841 aa12.09□□□□□ -0.47
TRAF1-202ENST00000540010 GORABQ5T7V8 394 aa12.09□□□□□ -0.47
TRAF1-202ENST00000540010 TNS3Q68CZ2 1445 aa12.09□□□□□ -0.47
TRAF1-202ENST00000540010 LTN1O94822 1766 aa12.08□□□□□ -0.47
TRAF1-202ENST00000540010 CSPP1Q1MSJ5 1256 aa12.08□□□□□ -0.48
TRAF1-202ENST00000540010 DIAPH3Q9NSV4 1193 aa12.08□□□□□ -0.48
TRAF1-202ENST00000540010 NCOA3Q9Y6Q9 1424 aa12.08□□□□□ -0.48
TRAF1-202ENST00000540010 SLC39A6Q13433 755 aa12.08□□□□□ -0.48
TRAF1-202ENST00000540010 ZNF592Q92610 1267 aa12.08□□□□□ -0.48
TRAF1-202ENST00000540010 DBF4Q9UBU7 674 aaPredicted RBP12.08□□□□□ -0.48
TRAF1-202ENST00000540010 SMARCA5O60264 1052 aaPredicted RBP12.07□□□□□ -0.48
TRAF1-202ENST00000540010 CABP4P57796 275 aa12.07□□□□□ -0.48
TRAF1-202ENST00000540010 DCTPP1Q9H773 170 aa12.07□□□□□ -0.48
TRAF1-202ENST00000540010 RBM10P98175 930 aaKnown RBP12.07□□□□□ -0.48
TRAF1-202ENST00000540010 C9orf78Q9NZ63 289 aaPredicted RBP12.07□□□□□ -0.48
TRAF1-202ENST00000540010 PI4KAP2A4QPH2 592 aa12.07□□□□□ -0.48
TRAF1-202ENST00000540010 SF3A1Q15459 793 aaKnown RBP12.07□□□□□ -0.48
TRAF1-202ENST00000540010 PI4KAP1Q8N8J0 262 aa12.07□□□□□ -0.48
TRAF1-202ENST00000540010 ATP6V1DQ9Y5K8 247 aa12.07□□□□□ -0.48
TRAF1-202ENST00000540010 DDX58O95786 925 aaKnown RBP12.07□□□□□ -0.48
TRAF1-202ENST00000540010 NFATC2IPQ8NCF5 419 aa12.07□□□□□ -0.48
TRAF1-202ENST00000540010 EXOC6BQ9Y2D4 811 aa12.07□□□□□ -0.48
TRAF1-202ENST00000540010 LRRFIP2Q9Y608 721 aaKnown RBP12.07□□□□□ -0.48
TRAF1-202ENST00000540010 KIF1AQ12756 1690 aa12.07□□□□□ -0.48
TRAF1-202ENST00000540010 DNAAF4Q8WXU2 420 aa12.06□□□□□ -0.48
TRAF1-202ENST00000540010 GRPEL1Q9HAV7 217 aa12.06□□□□□ -0.48
TRAF1-202ENST00000540010 H3BQV1 296 aa12.06□□□□□ -0.48
TRAF1-202ENST00000540010 HOXB7P09629 217 aa12.06□□□□□ -0.48
TRAF1-202ENST00000540010 IFFO2Q5TF58 517 aa12.06□□□□□ -0.48
TRAF1-202ENST00000540010 DDX54Q8TDD1 881 aaKnown RBP12.06□□□□□ -0.48
TRAF1-202ENST00000540010 CEMIPQ8WUJ3 1361 aa12.06□□□□□ -0.48
TRAF1-202ENST00000540010 BECN2A8MW95 431 aa12.05□□□□□ -0.48
TRAF1-202ENST00000540010 MYL6BP14649 208 aa12.05□□□□□ -0.48
TRAF1-202ENST00000540010 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.05□□□□□ -0.48
TRAF1-202ENST00000540010 BMP2KLQ5H9B9 411 aa12.05□□□□□ -0.48
TRAF1-202ENST00000540010 CREBRFQ8IUR6 639 aa12.05□□□□□ -0.48
TRAF1-202ENST00000540010 FAM184AQ8NB25 1140 aa12.05□□□□□ -0.48
TRAF1-202ENST00000540010 PHKG2P15735 406 aa12.05□□□□□ -0.48
TRAF1-202ENST00000540010 RIC3Q7Z5B4 369 aa12.05□□□□□ -0.48
TRAF1-202ENST00000540010 SLIT3O75094 1523 aa12.04□□□□□ -0.48
TRAF1-202ENST00000540010 GOLGA6L19H0YKK7 550 aa12.04□□□□□ -0.48
TRAF1-202ENST00000540010 NPHP1O15259 732 aa12.04□□□□□ -0.48
TRAF1-202ENST00000540010 C16orf71Q8IYS4 520 aaPredicted RBP12.04□□□□□ -0.48
TRAF1-202ENST00000540010 ESPNB1AK53 854 aa12.04□□□□□ -0.48
TRAF1-202ENST00000540010 FBXW7Q969H0 707 aa12.04□□□□□ -0.48
TRAF1-202ENST00000540010 SMC3Q9UQE7 1217 aa12.04□□□□□ -0.48
TRAF1-202ENST00000540010 GIGYF1O75420 1035 aaPredicted RBP12.03□□□□□ -0.48
TRAF1-202ENST00000540010 ZKSCAN1P17029 563 aaPredicted RBP12.03□□□□□ -0.48
TRAF1-202ENST00000540010 ZNF790Q6PG37 636 aa12.03□□□□□ -0.48
TRAF1-202ENST00000540010 DCAF5Q96JK2 942 aa12.03□□□□□ -0.48
TRAF1-202ENST00000540010 SLC52A2Q9HAB3 445 aa12.03□□□□□ -0.48
TRAF1-202ENST00000540010 NEXNQ0ZGT2 675 aa12.03□□□□□ -0.48
TRAF1-202ENST00000540010 TBC1D32Q96NH3 1257 aa12.03□□□□□ -0.48
TRAF1-202ENST00000540010 TBC1D2Q9BYX2 928 aa12.03□□□□□ -0.48
TRAF1-202ENST00000540010 MAP3K2Q9Y2U5 619 aa12.03□□□□□ -0.48
TRAF1-202ENST00000540010 SURF6O75683 361 aaKnown RBP12.03□□□□□ -0.48
TRAF1-202ENST00000540010 NCAPD2Q15021 1401 aa12.03□□□□□ -0.48
TRAF1-202ENST00000540010 LRRCC1Q9C099 1032 aa12.03□□□□□ -0.48
TRAF1-202ENST00000540010 HYPKQ9NX55 129 aa12.03□□□□□ -0.48
TRAF1-202ENST00000540010 HDAC5Q9UQL6 1122 aa12.03□□□□□ -0.48
TRAF1-202ENST00000540010 BICD2Q8TD16 824 aa12.02□□□□□ -0.48
TRAF1-202ENST00000540010 RGS12O14924 1447 aa12.02□□□□□ -0.48
TRAF1-202ENST00000540010 PRAMEF22A3QJZ6 481 aa12.02□□□□□ -0.48
TRAF1-202ENST00000540010 ZCRB1Q8TBF4 217 aaKnown RBP12.02□□□□□ -0.48
TRAF1-202ENST00000540010 PXDNQ92626 1479 aa12.02□□□□□ -0.49
TRAF1-202ENST00000540010 SRGAP3O43295 1099 aa12.02□□□□□ -0.49
TRAF1-202ENST00000540010 FOSBP53539 338 aa12.02□□□□□ -0.49
TRAF1-202ENST00000540010 TAF7LQ5H9L4 462 aa12.02□□□□□ -0.49
TRAF1-202ENST00000540010 TOMM22Q9NS69 142 aa12.02□□□□□ -0.49
TRAF1-202ENST00000540010 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.02□□□□□ -0.49
TRAF1-202ENST00000540010 MARF1Q9Y4F3 1742 aaKnown RBP12.01□□□□□ -0.49
TRAF1-202ENST00000540010 IFIT2P09913 472 aaKnown RBP12.01□□□□□ -0.49
TRAF1-202ENST00000540010 PRKCSHP14314 528 aaPredicted RBP12.01□□□□□ -0.49
TRAF1-202ENST00000540010 PLEKHM2Q8IWE5 1019 aa12.01□□□□□ -0.49
TRAF1-202ENST00000540010 K7ELQ4 463 aaPredicted RBP12.01□□□□□ -0.49
TRAF1-202ENST00000540010 ATP8B2P98198 1209 aa12.01□□□□□ -0.49
TRAF1-202ENST00000540010 FMNL2Q96PY5 1086 aa12.01□□□□□ -0.49
TRAF1-202ENST00000540010 USP44Q9H0E7 712 aa12.01□□□□□ -0.49
TRAF1-202ENST00000540010 OTUD7AQ8TE49 926 aaPredicted RBP12.01□□□□□ -0.49
TRAF1-202ENST00000540010 LMTK3Q96Q04 1460 aa12□□□□□ -0.49
TRAF1-202ENST00000540010 PROSER3Q2NL68 480 aa12□□□□□ -0.49
TRAF1-202ENST00000540010 TBC1D9Q6ZT07 1266 aa12□□□□□ -0.49
TRAF1-202ENST00000540010 USP54Q70EL1 1684 aa12□□□□□ -0.49
TRAF1-202ENST00000540010 PNMA6EA0A0J9YXQ4 647 aa12□□□□□ -0.49
TRAF1-202ENST00000540010 IL2RBP14784 551 aa12□□□□□ -0.49
TRAF1-202ENST00000540010 TPM4P67936 248 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms