RNA–Protein interactions for RNA: ENST00000539332.2

DDB1-213, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 1,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-213ENST00000539332 CABP4P57796 275 aa11.23□□□□□ -0.61
DDB1-213ENST00000539332 ZNF772Q68DY9 489 aaPredicted RBP11.23□□□□□ -0.61
DDB1-213ENST00000539332 MARCH10Q8NA82 808 aaPredicted RBP11.23□□□□□ -0.61
DDB1-213ENST00000539332 ZBTB47Q9UFB7 747 aaPredicted RBP11.23□□□□□ -0.61
DDB1-213ENST00000539332 HEG1Q9ULI3 1381 aa11.23□□□□□ -0.61
DDB1-213ENST00000539332 ELL2O00472 640 aaPredicted RBP11.23□□□□□ -0.61
DDB1-213ENST00000539332 HOXB7P09629 217 aa11.23□□□□□ -0.61
DDB1-213ENST00000539332 FTSJ3Q8IY81 847 aaKnown RBP11.23□□□□□ -0.61
DDB1-213ENST00000539332 BRWD3Q6RI45 1802 aa11.22□□□□□ -0.61
DDB1-213ENST00000539332 CENPQQ7L2Z9 268 aaPredicted RBP11.22□□□□□ -0.61
DDB1-213ENST00000539332 DDX19BQ9UMR2 479 aa11.22□□□□□ -0.61
DDB1-213ENST00000539332 KCNQ3O43525 872 aa11.21□□□□□ -0.61
DDB1-213ENST00000539332 PPP4R3CPQ6ZMV5 832 aa11.21□□□□□ -0.61
DDB1-213ENST00000539332 PTPRCP08575 1304 aa11.21□□□□□ -0.61
DDB1-213ENST00000539332 EIF4A1P60842 406 aaKnown RBP11.21□□□□□ -0.62
DDB1-213ENST00000539332 ZNF790Q6PG37 636 aa11.21□□□□□ -0.62
DDB1-213ENST00000539332 TMEM57Q8N5G2 664 aa11.21□□□□□ -0.62
DDB1-213ENST00000539332 API5Q9BZZ5 524 aaKnown RBP11.21□□□□□ -0.62
DDB1-213ENST00000539332 FOXD4L1Q9NU39 408 aa11.21□□□□□ -0.62
DDB1-213ENST00000539332 PXDNLA1KZ92 1463 aa11.2□□□□□ -0.62
DDB1-213ENST00000539332 SLC39A6Q13433 755 aa11.2□□□□□ -0.62
DDB1-213ENST00000539332 SEPT12Q8IYM1 358 aa11.2□□□□□ -0.62
DDB1-213ENST00000539332 TMOD3Q9NYL9 352 aa11.2□□□□□ -0.62
DDB1-213ENST00000539332 BCL9O00512 1426 aa11.2□□□□□ -0.62
DDB1-213ENST00000539332 RBM6P78332 1123 aaKnown RBP11.19□□□□□ -0.62
DDB1-213ENST00000539332 ZBTB40Q9NUA8 1239 aa11.19□□□□□ -0.62
DDB1-213ENST00000539332 SBF2Q86WG5 1849 aa11.19□□□□□ -0.62
DDB1-213ENST00000539332 PRIM1P49642 420 aaKnown RBP11.18□□□□□ -0.62
DDB1-213ENST00000539332 TTC5Q8N0Z6 440 aa11.18□□□□□ -0.62
DDB1-213ENST00000539332 PIGBQ92521 554 aa11.18□□□□□ -0.62
DDB1-213ENST00000539332 RGS17Q9UGC6 210 aaPredicted RBP11.18□□□□□ -0.62
DDB1-213ENST00000539332 PCDHB15Q9Y5E8 787 aa11.18□□□□□ -0.62
DDB1-213ENST00000539332 NBR1Q14596 966 aa11.18□□□□□ -0.62
DDB1-213ENST00000539332 CCDC30Q5VVM6 783 aa11.18□□□□□ -0.62
DDB1-213ENST00000539332 INTS3Q68E01 1043 aaKnown RBP11.18□□□□□ -0.62
DDB1-213ENST00000539332 ITPRIPQ8IWB1 547 aa11.18□□□□□ -0.62
DDB1-213ENST00000539332 SYTL4Q96C24 671 aaPredicted RBP11.18□□□□□ -0.62
DDB1-213ENST00000539332 ZNF496Q96IT1 587 aaPredicted RBP11.18□□□□□ -0.62
DDB1-213ENST00000539332 KCPQ6ZWJ8 1503 aa11.17□□□□□ -0.62
DDB1-213ENST00000539332 TCERG1O14776 1098 aaKnown RBP11.17□□□□□ -0.62
DDB1-213ENST00000539332 GIGYF1O75420 1035 aaPredicted RBP11.17□□□□□ -0.62
DDB1-213ENST00000539332 CHMP4AQ9BY43 222 aa11.17□□□□□ -0.62
DDB1-213ENST00000539332 ACSBG1Q96GR2 724 aa11.16□□□□□ -0.62
DDB1-213ENST00000539332 CHMP4BQ9H444 224 aaKnown RBP11.16□□□□□ -0.62
DDB1-213ENST00000539332 NHSQ6T4R5 1651 aa11.16□□□□□ -0.62
DDB1-213ENST00000539332 ZBTB7BO15156 539 aaPredicted RBP11.16□□□□□ -0.62
DDB1-213ENST00000539332 IGHDP01880 384 aa11.16□□□□□ -0.62
DDB1-213ENST00000539332 SLC4A2P04920 1241 aa11.16□□□□□ -0.62
DDB1-213ENST00000539332 RXRBP28702 533 aa11.16□□□□□ -0.62
DDB1-213ENST00000539332 FAM182BQ5T319 152 aa11.16□□□□□ -0.62
DDB1-213ENST00000539332 FMNL2Q96PY5 1086 aa11.16□□□□□ -0.62
DDB1-213ENST00000539332 STK31Q9BXU1 1019 aa11.16□□□□□ -0.62
DDB1-213ENST00000539332 ATG3Q9NT62 314 aa11.16□□□□□ -0.62
DDB1-213ENST00000539332 ASAP1Q9ULH1 1129 aa11.16□□□□□ -0.62
DDB1-213ENST00000539332 BTAF1O14981 1849 aa11.15□□□□□ -0.62
DDB1-213ENST00000539332 PRAMEF22A3QJZ6 481 aa11.15□□□□□ -0.62
DDB1-213ENST00000539332 KCNQ2O43526 872 aa11.15□□□□□ -0.62
DDB1-213ENST00000539332 HDAC1Q13547 482 aaPredicted RBP11.15□□□□□ -0.62
DDB1-213ENST00000539332 HDGFL1Q5TGJ6 251 aa11.15□□□□□ -0.62
DDB1-213ENST00000539332 PTCD1O75127 700 aaKnown RBP11.14□□□□□ -0.63
DDB1-213ENST00000539332 SNRPA1P09661 255 aaKnown RBP11.14□□□□□ -0.63
DDB1-213ENST00000539332 POTEAQ6S8J7 498 aa11.14□□□□□ -0.63
DDB1-213ENST00000539332 G2E3Q7L622 706 aa11.14□□□□□ -0.63
DDB1-213ENST00000539332 ILDR1Q86SU0 546 aaPredicted RBP11.14□□□□□ -0.63
DDB1-213ENST00000539332 NECTIN2Q92692 538 aa11.14□□□□□ -0.63
DDB1-213ENST00000539332 EIF2S2P20042 333 aaKnown RBP11.13□□□□□ -0.63
DDB1-213ENST00000539332 FLIIQ13045 1269 aa11.13□□□□□ -0.63
DDB1-213ENST00000539332 KRT27Q7Z3Y8 459 aa11.13□□□□□ -0.63
DDB1-213ENST00000539332 ATP10DQ9P241 1426 aa11.13□□□□□ -0.63
DDB1-213ENST00000539332 RWDD1Q9H446 243 aaPredicted RBP11.13□□□□□ -0.63
DDB1-213ENST00000539332 CICQ96RK0 1608 aaPredicted RBP11.12□□□□□ -0.63
DDB1-213ENST00000539332 PTF1AQ7RTS3 328 aa11.12□□□□□ -0.63
DDB1-213ENST00000539332 ARFGEF2Q9Y6D5 1785 aa11.11□□□□□ -0.63
DDB1-213ENST00000539332 NUP188Q5SRE5 1749 aa11.11□□□□□ -0.63
DDB1-213ENST00000539332 CHPF2Q9P2E5 772 aa11.11□□□□□ -0.63
DDB1-213ENST00000539332 DBF4Q9UBU7 674 aaPredicted RBP11.11□□□□□ -0.63
DDB1-213ENST00000539332 USP16Q9Y5T5 823 aa11.11□□□□□ -0.63
DDB1-213ENST00000539332 TJP1Q07157 1748 aa11.11□□□□□ -0.63
DDB1-213ENST00000539332 CCT4P50991 539 aaKnown RBP11.11□□□□□ -0.63
DDB1-213ENST00000539332 FAM196AQ6ZSG2 479 aa11.11□□□□□ -0.63
DDB1-213ENST00000539332 SMC5Q8IY18 1101 aa11.11□□□□□ -0.63
DDB1-213ENST00000539332 DDRGK1Q96HY6 314 aa11.11□□□□□ -0.63
DDB1-213ENST00000539332 RBM42Q9BTD8 480 aaKnown RBP11.11□□□□□ -0.63
DDB1-213ENST00000539332 IBTKQ9P2D0 1353 aaPredicted RBP11.1□□□□□ -0.63
DDB1-213ENST00000539332 ZNF831Q5JPB2 1677 aa11.1□□□□□ -0.63
DDB1-213ENST00000539332 SLC4A9Q96Q91 983 aa11.1□□□□□ -0.63
DDB1-213ENST00000539332 PALLDQ8WX93 1383 aa11.1□□□□□ -0.63
DDB1-213ENST00000539332 AFDNP55196 1824 aaKnown RBP11.1□□□□□ -0.63
DDB1-213ENST00000539332 LY75O60449 1722 aa11.09□□□□□ -0.63
DDB1-213ENST00000539332 PDIA6Q15084 440 aa11.09□□□□□ -0.63
DDB1-213ENST00000539332 PROSER3Q2NL68 480 aa11.09□□□□□ -0.63
DDB1-213ENST00000539332 SMARCC1Q92922 1105 aaPredicted RBP11.09□□□□□ -0.63
DDB1-213ENST00000539332 F6X3S4 739 aa11.08□□□□□ -0.64
DDB1-213ENST00000539332 ANXA1P04083 346 aa11.08□□□□□ -0.64
DDB1-213ENST00000539332 FKBP5Q13451 457 aaPredicted RBP11.08□□□□□ -0.64
DDB1-213ENST00000539332 TEX13AQ9BXU3 409 aaPredicted RBP11.08□□□□□ -0.64
DDB1-213ENST00000539332 BCL11BQ9C0K0 894 aaPredicted RBP11.08□□□□□ -0.64
DDB1-213ENST00000539332 PHAXQ9H814 394 aaKnown RBP11.08□□□□□ -0.64
DDB1-213ENST00000539332 DDX21Q9NR30 783 aaKnown RBP eCLIP11.08□□□□□ -0.64
DDB1-213ENST00000539332 ADCY9O60503 1353 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms