RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 TGFB2P61812 414 aa9.69□□□□□ -0.86
LMO3-220ENST00000539232 MCM10Q7L590 875 aa9.69□□□□□ -0.86
LMO3-220ENST00000539232 N4BP2Q86UW6 1770 aaPredicted RBP9.69□□□□□ -0.86
LMO3-220ENST00000539232 DNAJC10Q8IXB1 793 aa9.69□□□□□ -0.86
LMO3-220ENST00000539232 PLEKHF1Q96S99 279 aa9.69□□□□□ -0.86
LMO3-220ENST00000539232 KIAA1551Q9HCM1 1747 aa9.69□□□□□ -0.86
LMO3-220ENST00000539232 ARFGEF1Q9Y6D6 1849 aa9.68□□□□□ -0.86
LMO3-220ENST00000539232 C5P01031 1676 aa9.68□□□□□ -0.86
LMO3-220ENST00000539232 VEGFAP15692 232 aaPredicted RBP9.68□□□□□ -0.86
LMO3-220ENST00000539232 CCDC184Q52MB2 194 aa9.68□□□□□ -0.86
LMO3-220ENST00000539232 INTS5Q6P9B9 1019 aaKnown RBP9.68□□□□□ -0.86
LMO3-220ENST00000539232 AK7Q96M32 723 aa9.68□□□□□ -0.86
LMO3-220ENST00000539232 THUMPD2Q9BTF0 503 aaKnown RBP9.68□□□□□ -0.86
LMO3-220ENST00000539232 WBP1LQ9NX94 342 aa9.68□□□□□ -0.86
LMO3-220ENST00000539232 CNTNAP1P78357 1384 aa9.67□□□□□ -0.86
LMO3-220ENST00000539232 PRAMEF22A3QJZ6 481 aa9.67□□□□□ -0.86
LMO3-220ENST00000539232 FCHSD2O94868 740 aa9.67□□□□□ -0.86
LMO3-220ENST00000539232 ZNF496Q96IT1 587 aaPredicted RBP9.67□□□□□ -0.86
LMO3-220ENST00000539232 MIS18AQ9NYP9 233 aa9.67□□□□□ -0.86
LMO3-220ENST00000539232 RNF181Q9P0P0 153 aa9.67□□□□□ -0.86
LMO3-220ENST00000539232 SRP68Q9UHB9 627 aaKnown RBP9.67□□□□□ -0.86
LMO3-220ENST00000539232 SBF1O95248 1867 aa9.67□□□□□ -0.86
LMO3-220ENST00000539232 BRCA1P38398 1863 aaKnown RBP9.67□□□□□ -0.86
LMO3-220ENST00000539232 TAF1LQ8IZX4 1826 aa9.66□□□□□ -0.86
LMO3-220ENST00000539232 ZC3H4Q9UPT8 1303 aaKnown RBP9.66□□□□□ -0.86
LMO3-220ENST00000539232 GNAT3A8MTJ3 354 aa9.66□□□□□ -0.86
LMO3-220ENST00000539232 CENPBP07199 599 aaPredicted RBP9.66□□□□□ -0.86
LMO3-220ENST00000539232 HSPA8P11142 646 aaKnown RBP9.66□□□□□ -0.86
LMO3-220ENST00000539232 CRKLP46109 303 aaKnown RBP9.66□□□□□ -0.86
LMO3-220ENST00000539232 RALBP1Q15311 655 aa9.66□□□□□ -0.86
LMO3-220ENST00000539232 ARHGEF1Q92888 912 aaKnown RBP9.66□□□□□ -0.86
LMO3-220ENST00000539232 NUDCQ9Y266 331 aa9.66□□□□□ -0.86
LMO3-220ENST00000539232 VIRMAQ69YN4 1812 aaKnown RBP9.66□□□□□ -0.86
LMO3-220ENST00000539232 CEMIPQ8WUJ3 1361 aa9.65□□□□□ -0.86
LMO3-220ENST00000539232 A0A0G2JLW4 131 aa9.65□□□□□ -0.86
LMO3-220ENST00000539232 CCDC146Q8IYE0 955 aa9.65□□□□□ -0.86
LMO3-220ENST00000539232 GAS2L2Q8NHY3 880 aa9.65□□□□□ -0.86
LMO3-220ENST00000539232 PRKRIP1Q9H875 184 aaPredicted RBP9.65□□□□□ -0.86
LMO3-220ENST00000539232 RPS6KA4O75676 772 aa9.64□□□□□ -0.87
LMO3-220ENST00000539232 CYP19A1P11511 503 aaPredicted RBP9.64□□□□□ -0.87
LMO3-220ENST00000539232 PIP4K2AP48426 406 aaPredicted RBP9.64□□□□□ -0.87
LMO3-220ENST00000539232 RC3H1Q5TC82 1133 aaKnown RBP9.64□□□□□ -0.87
LMO3-220ENST00000539232 RRP7AQ9Y3A4 280 aaKnown RBP9.64□□□□□ -0.87
LMO3-220ENST00000539232 MRC1P22897 1456 aa9.64□□□□□ -0.87
LMO3-220ENST00000539232 UBR3Q6ZT12 1888 aa9.64□□□□□ -0.87
LMO3-220ENST00000539232 MYBBP1AQ9BQG0 1328 aaKnown RBP9.63□□□□□ -0.87
LMO3-220ENST00000539232 CNTNAP4Q9C0A0 1308 aa9.63□□□□□ -0.87
LMO3-220ENST00000539232 SSFA2P28290 1259 aa9.63□□□□□ -0.87
LMO3-220ENST00000539232 PRPF38BQ5VTL8 546 aaKnown RBP9.63□□□□□ -0.87
LMO3-220ENST00000539232 ZNF790Q6PG37 636 aa9.63□□□□□ -0.87
LMO3-220ENST00000539232 CFAP44Q96MT7 982 aa9.63□□□□□ -0.87
LMO3-220ENST00000539232 ZBTB1Q9Y2K1 713 aa9.63□□□□□ -0.87
LMO3-220ENST00000539232 ZNF316A6NFI3 1004 aaPredicted RBP9.62□□□□□ -0.87
LMO3-220ENST00000539232 GLTPD2A6NH11 291 aa9.62□□□□□ -0.87
LMO3-220ENST00000539232 A1BGP04217 495 aa9.62□□□□□ -0.87
LMO3-220ENST00000539232 GYS1P13807 737 aa9.62□□□□□ -0.87
LMO3-220ENST00000539232 DPEP1P16444 411 aa9.62□□□□□ -0.87
LMO3-220ENST00000539232 VEGFBP49765 207 aa9.62□□□□□ -0.87
LMO3-220ENST00000539232 TEFQ10587 303 aa9.62□□□□□ -0.87
LMO3-220ENST00000539232 FKBP8Q14318 412 aa9.62□□□□□ -0.87
LMO3-220ENST00000539232 NFE2L2Q16236 605 aa9.62□□□□□ -0.87
LMO3-220ENST00000539232 TRAPPC3LQ5T215 181 aa9.62□□□□□ -0.87
LMO3-220ENST00000539232 BCL2L12Q9HB09 334 aa9.62□□□□□ -0.87
LMO3-220ENST00000539232 CCDC87Q9NVE4 849 aa9.62□□□□□ -0.87
LMO3-220ENST00000539232 ADAMTS8Q9UP79 889 aa9.62□□□□□ -0.87
LMO3-220ENST00000539232 RTCBQ9Y3I0 505 aaKnown RBP9.62□□□□□ -0.87
LMO3-220ENST00000539232 C4BP0C0L5 1744 aa9.62□□□□□ -0.87
LMO3-220ENST00000539232 SOS1Q07889 1333 aaPredicted RBP9.61□□□□□ -0.87
LMO3-220ENST00000539232 BTBD11A6QL63 1104 aa9.61□□□□□ -0.87
LMO3-220ENST00000539232 MMP10P09238 476 aa9.61□□□□□ -0.87
LMO3-220ENST00000539232 CANXP27824 592 aaKnown RBP9.61□□□□□ -0.87
LMO3-220ENST00000539232 MAP2K1Q02750 393 aaPredicted RBP9.61□□□□□ -0.87
LMO3-220ENST00000539232 DDR1Q08345 913 aa9.61□□□□□ -0.87
LMO3-220ENST00000539232 USP16Q9Y5T5 823 aa9.61□□□□□ -0.87
LMO3-220ENST00000539232 ITGB4P16144 1822 aa9.59□□□□□ -0.87
LMO3-220ENST00000539232 NBPF26B4DH59 902 aa9.59□□□□□ -0.87
LMO3-220ENST00000539232 RFC4P35249 363 aa9.59□□□□□ -0.87
LMO3-220ENST00000539232 TMPOP42166 694 aaKnown RBP9.59□□□□□ -0.87
LMO3-220ENST00000539232 USPL1Q5W0Q7 1092 aa9.59□□□□□ -0.87
LMO3-220ENST00000539232 CHADLQ6NUI6 762 aa9.59□□□□□ -0.87
LMO3-220ENST00000539232 NBPF10Q6P3W6 841 aaKnown RBP9.59□□□□□ -0.87
LMO3-220ENST00000539232 NBPF15Q8N660 670 aa9.59□□□□□ -0.87
LMO3-220ENST00000539232 PIM2Q9P1W9 311 aa9.59□□□□□ -0.87
LMO3-220ENST00000539232 HEG1Q9ULI3 1381 aa9.59□□□□□ -0.87
LMO3-220ENST00000539232 USP42Q9H9J4 1324 aaKnown RBP9.58□□□□□ -0.88
LMO3-220ENST00000539232 ADAMTS7Q9UKP4 1686 aa9.58□□□□□ -0.88
LMO3-220ENST00000539232 KCNA3P22001 575 aa9.58□□□□□ -0.88
LMO3-220ENST00000539232 EIF5P55010 431 aaKnown RBP9.58□□□□□ -0.88
LMO3-220ENST00000539232 RIPK4P57078 832 aa9.58□□□□□ -0.88
LMO3-220ENST00000539232 TAF7Q15545 349 aaPredicted RBP9.58□□□□□ -0.88
LMO3-220ENST00000539232 NEUROD2Q15784 382 aa9.58□□□□□ -0.88
LMO3-220ENST00000539232 KRT24Q2M2I5 525 aa9.58□□□□□ -0.88
LMO3-220ENST00000539232 DALRD3Q5D0E6 543 aaKnown RBP9.58□□□□□ -0.88
LMO3-220ENST00000539232 TTC5Q8N0Z6 440 aa9.58□□□□□ -0.88
LMO3-220ENST00000539232 VSIG10Q8N0Z9 540 aa9.58□□□□□ -0.88
LMO3-220ENST00000539232 RTF1Q92541 710 aaKnown RBP9.58□□□□□ -0.88
LMO3-220ENST00000539232 TRIM35Q9UPQ4 493 aa9.58□□□□□ -0.88
LMO3-220ENST00000539232 POTECB2RU33 542 aa9.57□□□□□ -0.88
LMO3-220ENST00000539232 HTATSF1O43719 755 aaKnown RBP9.57□□□□□ -0.88
LMO3-220ENST00000539232 ADRA2BP18089 450 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms