RNA–Protein interactions for RNA: ENST00000538363.1

TNFRSF1A-211, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 2

Gene TNFRSF1A, Length 554 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-211ENST00000538363 FAM196AQ6ZSG2 479 aa13.61□□□□□ -0.23
TNFRSF1A-211ENST00000538363 SSH1Q8WYL5 1049 aa13.61□□□□□ -0.23
TNFRSF1A-211ENST00000538363 SIPA1L3O60292 1781 aaPredicted RBP13.6□□□□□ -0.23
TNFRSF1A-211ENST00000538363 BTAF1O14981 1849 aa13.6□□□□□ -0.23
TNFRSF1A-211ENST00000538363 PLIN1O60240 522 aa13.6□□□□□ -0.23
TNFRSF1A-211ENST00000538363 HOXB7P09629 217 aa13.6□□□□□ -0.23
TNFRSF1A-211ENST00000538363 FTSJ3Q8IY81 847 aaKnown RBP13.6□□□□□ -0.23
TNFRSF1A-211ENST00000538363 TEX13AQ9BXU3 409 aaPredicted RBP13.6□□□□□ -0.23
TNFRSF1A-211ENST00000538363 KIF16BQ96L93 1317 aa13.6□□□□□ -0.23
TNFRSF1A-211ENST00000538363 GIGYF1O75420 1035 aaPredicted RBP13.59□□□□□ -0.23
TNFRSF1A-211ENST00000538363 ZNF496Q96IT1 587 aaPredicted RBP13.59□□□□□ -0.23
TNFRSF1A-211ENST00000538363 ASAP1Q9ULH1 1129 aa13.59□□□□□ -0.23
TNFRSF1A-211ENST00000538363 NOB1Q9ULX3 412 aaKnown RBP13.59□□□□□ -0.23
TNFRSF1A-211ENST00000538363 GTF3C3Q9Y5Q9 886 aa13.59□□□□□ -0.23
TNFRSF1A-211ENST00000538363 ATG3Q9NT62 314 aa13.58□□□□□ -0.24
TNFRSF1A-211ENST00000538363 KCNQ2O43526 872 aa13.57□□□□□ -0.24
TNFRSF1A-211ENST00000538363 STARD3NLO95772 234 aa13.57□□□□□ -0.24
TNFRSF1A-211ENST00000538363 MRPL50Q8N5N7 158 aaKnown RBP13.57□□□□□ -0.24
TNFRSF1A-211ENST00000538363 ARXQ96QS3 562 aa13.57□□□□□ -0.24
TNFRSF1A-211ENST00000538363 API5Q9BZZ5 524 aaKnown RBP13.57□□□□□ -0.24
TNFRSF1A-211ENST00000538363 DBF4Q9UBU7 674 aaPredicted RBP13.57□□□□□ -0.24
TNFRSF1A-211ENST00000538363 KDM3BQ7LBC6 1761 aa13.57□□□□□ -0.24
TNFRSF1A-211ENST00000538363 PAPPAQ13219 1627 aa13.57□□□□□ -0.24
TNFRSF1A-211ENST00000538363 MRC1P22897 1456 aa13.56□□□□□ -0.24
TNFRSF1A-211ENST00000538363 CLUAP1Q96AJ1 413 aa13.56□□□□□ -0.24
TNFRSF1A-211ENST00000538363 ZNF330Q9Y3S2 320 aaPredicted RBP13.56□□□□□ -0.24
TNFRSF1A-211ENST00000538363 HEG1Q9ULI3 1381 aa13.56□□□□□ -0.24
TNFRSF1A-211ENST00000538363 BCL9O00512 1426 aa13.56□□□□□ -0.24
TNFRSF1A-211ENST00000538363 MYL6BP14649 208 aa13.55□□□□□ -0.24
TNFRSF1A-211ENST00000538363 ATP6V1AP38606 617 aa13.55□□□□□ -0.24
TNFRSF1A-211ENST00000538363 FKBP5Q13451 457 aaPredicted RBP13.55□□□□□ -0.24
TNFRSF1A-211ENST00000538363 DZIP1LQ8IYY4 767 aaKnown RBP13.55□□□□□ -0.24
TNFRSF1A-211ENST00000538363 UPF1Q92900 1129 aaKnown RBP eCLIP13.55□□□□□ -0.24
TNFRSF1A-211ENST00000538363 HYPKQ9NX55 129 aa13.55□□□□□ -0.24
TNFRSF1A-211ENST00000538363 TRIM37O94972 964 aa13.54□□□□□ -0.24
TNFRSF1A-211ENST00000538363 DDX58O95786 925 aaKnown RBP13.54□□□□□ -0.24
TNFRSF1A-211ENST00000538363 AIMP1Q12904 312 aaKnown RBP13.54□□□□□ -0.24
TNFRSF1A-211ENST00000538363 ATF7IPQ6VMQ6 1270 aa13.54□□□□□ -0.24
TNFRSF1A-211ENST00000538363 VSIG10Q8N0Z9 540 aa13.54□□□□□ -0.24
TNFRSF1A-211ENST00000538363 CHPF2Q9P2E5 772 aa13.54□□□□□ -0.24
TNFRSF1A-211ENST00000538363 USP16Q9Y5T5 823 aa13.54□□□□□ -0.24
TNFRSF1A-211ENST00000538363 PRAMEF22A3QJZ6 481 aa13.53□□□□□ -0.24
TNFRSF1A-211ENST00000538363 HMGB2P26583 209 aaKnown RBP13.53□□□□□ -0.24
TNFRSF1A-211ENST00000538363 SF3B2Q13435 895 aaKnown RBP13.53□□□□□ -0.24
TNFRSF1A-211ENST00000538363 SLC4A10Q6U841 1118 aa13.53□□□□□ -0.24
TNFRSF1A-211ENST00000538363 DNAJC10Q8IXB1 793 aa13.53□□□□□ -0.24
TNFRSF1A-211ENST00000538363 BCL11BQ9C0K0 894 aaPredicted RBP13.53□□□□□ -0.24
TNFRSF1A-211ENST00000538363 CHMP4BQ9H444 224 aaKnown RBP13.53□□□□□ -0.24
TNFRSF1A-211ENST00000538363 LOC102724428A0A0B4J2F2 783 aa13.52□□□□□ -0.25
TNFRSF1A-211ENST00000538363 SIK1P57059 783 aa13.52□□□□□ -0.25
TNFRSF1A-211ENST00000538363 PDE3AQ14432 1141 aa13.52□□□□□ -0.25
TNFRSF1A-211ENST00000538363 ITPRIPQ8IWB1 547 aa13.52□□□□□ -0.25
TNFRSF1A-211ENST00000538363 ARHGAP45Q92619 1136 aa13.52□□□□□ -0.25
TNFRSF1A-211ENST00000538363 DDX21Q9NR30 783 aaKnown RBP eCLIP13.52□□□□□ -0.25
TNFRSF1A-211ENST00000538363 PTPRCP08575 1304 aa13.52□□□□□ -0.25
TNFRSF1A-211ENST00000538363 PALLDQ8WX93 1383 aa13.52□□□□□ -0.25
TNFRSF1A-211ENST00000538363 UBR2Q8IWV8 1755 aa13.51□□□□□ -0.25
TNFRSF1A-211ENST00000538363 ANXA1P04083 346 aa13.51□□□□□ -0.25
TNFRSF1A-211ENST00000538363 FLIIQ13045 1269 aa13.51□□□□□ -0.25
TNFRSF1A-211ENST00000538363 PTF1AQ7RTS3 328 aa13.51□□□□□ -0.25
TNFRSF1A-211ENST00000538363 PANK1Q8TE04 598 aa13.51□□□□□ -0.25
TNFRSF1A-211ENST00000538363 CCNL1Q9UK58 526 aaPredicted RBP13.51□□□□□ -0.25
TNFRSF1A-211ENST00000538363 C5P01031 1676 aa13.5□□□□□ -0.25
TNFRSF1A-211ENST00000538363 RNF123Q5XPI4 1314 aa13.5□□□□□ -0.25
TNFRSF1A-211ENST00000538363 APBA3O96018 575 aa13.5□□□□□ -0.25
TNFRSF1A-211ENST00000538363 BRPF1P55201 1214 aaPredicted RBP13.5□□□□□ -0.25
TNFRSF1A-211ENST00000538363 RIC3Q7Z5B4 369 aa13.5□□□□□ -0.25
TNFRSF1A-211ENST00000538363 CCDC125Q86Z20 511 aa13.5□□□□□ -0.25
TNFRSF1A-211ENST00000538363 CRBNQ96SW2 442 aa13.5□□□□□ -0.25
TNFRSF1A-211ENST00000538363 COG6Q9Y2V7 657 aa13.5□□□□□ -0.25
TNFRSF1A-211ENST00000538363 LY75O60449 1722 aa13.5□□□□□ -0.25
TNFRSF1A-211ENST00000538363 ERBB4Q15303 1308 aa13.49□□□□□ -0.25
TNFRSF1A-211ENST00000538363 A1BGP04217 495 aa13.49□□□□□ -0.25
TNFRSF1A-211ENST00000538363 PIP4K2AP48426 406 aaPredicted RBP13.49□□□□□ -0.25
TNFRSF1A-211ENST00000538363 NEXNQ0ZGT2 675 aa13.49□□□□□ -0.25
TNFRSF1A-211ENST00000538363 ERICH6BQ5W0A0 696 aa13.49□□□□□ -0.25
TNFRSF1A-211ENST00000538363 G2E3Q7L622 706 aa13.49□□□□□ -0.25
TNFRSF1A-211ENST00000538363 PHAXQ9H814 394 aaKnown RBP13.49□□□□□ -0.25
TNFRSF1A-211ENST00000538363 CACNA1FO60840 1977 aa13.49□□□□□ -0.25
TNFRSF1A-211ENST00000538363 TJP1Q07157 1748 aa13.48□□□□□ -0.25
TNFRSF1A-211ENST00000538363 TRIM27P14373 513 aa13.48□□□□□ -0.25
TNFRSF1A-211ENST00000538363 C20orf194Q5TEA3 1177 aa13.48□□□□□ -0.25
TNFRSF1A-211ENST00000538363 KIF6Q6ZMV9 814 aa13.48□□□□□ -0.25
TNFRSF1A-211ENST00000538363 COPS6Q7L5N1 327 aa13.48□□□□□ -0.25
TNFRSF1A-211ENST00000538363 XAGE3Q8WTP9 111 aa13.48□□□□□ -0.25
TNFRSF1A-211ENST00000538363 RGPD3A6NKT7 1758 aaPredicted RBP13.48□□□□□ -0.25
TNFRSF1A-211ENST00000538363 RGPD4Q7Z3J3 1758 aa13.48□□□□□ -0.25
TNFRSF1A-211ENST00000538363 EXOC6Q8TAG9 804 aa13.47□□□□□ -0.25
TNFRSF1A-211ENST00000538363 CCDC87Q9NVE4 849 aa13.47□□□□□ -0.25
TNFRSF1A-211ENST00000538363 DDX19BQ9UMR2 479 aa13.47□□□□□ -0.25
TNFRSF1A-211ENST00000538363 KCPQ6ZWJ8 1503 aa13.47□□□□□ -0.25
TNFRSF1A-211ENST00000538363 LAMB4A4D0S4 1761 aa13.47□□□□□ -0.25
TNFRSF1A-211ENST00000538363 RREB1Q92766 1687 aa13.47□□□□□ -0.25
TNFRSF1A-211ENST00000538363 EP400Q96L91 3159 aa13.46□□□□□ -0.25
TNFRSF1A-211ENST00000538363 CYP19A1P11511 503 aaPredicted RBP13.46□□□□□ -0.25
TNFRSF1A-211ENST00000538363 CCT4P50991 539 aaKnown RBP13.46□□□□□ -0.25
TNFRSF1A-211ENST00000538363 MVPQ14764 893 aaKnown RBP13.46□□□□□ -0.25
TNFRSF1A-211ENST00000538363 PROSER3Q2NL68 480 aa13.46□□□□□ -0.25
TNFRSF1A-211ENST00000538363 ANKRD13DQ6ZTN6 518 aa13.46□□□□□ -0.25
TNFRSF1A-211ENST00000538363 TMEM57Q8N5G2 664 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms