RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 MPRIPQ6WCQ1 1025 aa8.15□□□□□ -1.1
USP28-206ENST00000538224 IFNL2Q8IZJ0 200 aa8.15□□□□□ -1.1
USP28-206ENST00000538224 NECTIN2Q92692 538 aa8.15□□□□□ -1.1
USP28-206ENST00000538224 USP44Q9H0E7 712 aa8.15□□□□□ -1.1
USP28-206ENST00000538224 SLKQ9H2G2 1235 aaPredicted RBP8.15□□□□□ -1.1
USP28-206ENST00000538224 STAP2Q9UGK3 403 aa8.15□□□□□ -1.1
USP28-206ENST00000538224 LRRFIP2Q9Y608 721 aaKnown RBP8.15□□□□□ -1.1
USP28-206ENST00000538224 SHANK3Q9BYB0 1731 aa8.15□□□□□ -1.11
USP28-206ENST00000538224 ADCY9O60503 1353 aa8.14□□□□□ -1.11
USP28-206ENST00000538224 DDX11L8A8MPP1 907 aa8.14□□□□□ -1.11
USP28-206ENST00000538224 K7ELQ4 463 aaPredicted RBP8.14□□□□□ -1.11
USP28-206ENST00000538224 GIGYF1O75420 1035 aaPredicted RBP8.14□□□□□ -1.11
USP28-206ENST00000538224 CSB-PGBD3P0DP91 1061 aa8.14□□□□□ -1.11
USP28-206ENST00000538224 SDSP20132 328 aa8.14□□□□□ -1.11
USP28-206ENST00000538224 MTX1Q13505 466 aa8.14□□□□□ -1.11
USP28-206ENST00000538224 POLA2Q14181 598 aa8.14□□□□□ -1.11
USP28-206ENST00000538224 GSE1Q14687 1217 aa8.14□□□□□ -1.11
USP28-206ENST00000538224 BEND3Q5T5X7 828 aa8.14□□□□□ -1.11
USP28-206ENST00000538224 KSR2Q6VAB6 950 aa8.14□□□□□ -1.11
USP28-206ENST00000538224 ERC1Q8IUD2 1116 aa8.14□□□□□ -1.11
USP28-206ENST00000538224 KIF1BPQ96EK5 621 aa8.14□□□□□ -1.11
USP28-206ENST00000538224 DCAF5Q96JK2 942 aa8.14□□□□□ -1.11
USP28-206ENST00000538224 SLC52A2Q9HAB3 445 aa8.14□□□□□ -1.11
USP28-206ENST00000538224 DDX21Q9NR30 783 aaKnown RBP eCLIP8.14□□□□□ -1.11
USP28-206ENST00000538224 NLRP2Q9NX02 1062 aa8.14□□□□□ -1.11
USP28-206ENST00000538224 PLCH1Q4KWH8 1693 aa8.14□□□□□ -1.11
USP28-206ENST00000538224 GLI3P10071 1580 aa8.14□□□□□ -1.11
USP28-206ENST00000538224 ERBB4Q15303 1308 aa8.13□□□□□ -1.11
USP28-206ENST00000538224 NUP188Q5SRE5 1749 aa8.13□□□□□ -1.11
USP28-206ENST00000538224 PI4KAP2A4QPH2 592 aa8.13□□□□□ -1.11
USP28-206ENST00000538224 APBB1O00213 710 aa8.13□□□□□ -1.11
USP28-206ENST00000538224 SMARCA5O60264 1052 aaPredicted RBP8.13□□□□□ -1.11
USP28-206ENST00000538224 ST18O60284 1047 aa8.13□□□□□ -1.11
USP28-206ENST00000538224 FRAT2O75474 233 aaPredicted RBP8.13□□□□□ -1.11
USP28-206ENST00000538224 HSP90AA1P07900 732 aaKnown RBP8.13□□□□□ -1.11
USP28-206ENST00000538224 PHKG2P15735 406 aa8.13□□□□□ -1.11
USP28-206ENST00000538224 ZC3H6P61129 1189 aaKnown RBP8.13□□□□□ -1.11
USP28-206ENST00000538224 TTC5Q8N0Z6 440 aa8.13□□□□□ -1.11
USP28-206ENST00000538224 PI4KAP1Q8N8J0 262 aa8.13□□□□□ -1.11
USP28-206ENST00000538224 GPATCH3Q96I76 525 aa8.13□□□□□ -1.11
USP28-206ENST00000538224 PHAXQ9H814 394 aaKnown RBP8.13□□□□□ -1.11
USP28-206ENST00000538224 EXOC6BQ9Y2D4 811 aa8.13□□□□□ -1.11
USP28-206ENST00000538224 AXIN2Q9Y2T1 843 aa8.13□□□□□ -1.11
USP28-206ENST00000538224 WNK3Q9BYP7 1800 aa8.13□□□□□ -1.11
USP28-206ENST00000538224 PNMA6EA0A0J9YXQ4 647 aa8.12□□□□□ -1.11
USP28-206ENST00000538224 MCM2P49736 904 aa8.12□□□□□ -1.11
USP28-206ENST00000538224 ANAPC15P60006 121 aa8.12□□□□□ -1.11
USP28-206ENST00000538224 NEXNQ0ZGT2 675 aa8.12□□□□□ -1.11
USP28-206ENST00000538224 ZNF790Q6PG37 636 aa8.12□□□□□ -1.11
USP28-206ENST00000538224 C16orf71Q8IYS4 520 aaPredicted RBP8.12□□□□□ -1.11
USP28-206ENST00000538224 LINS1Q8NG48 757 aa8.12□□□□□ -1.11
USP28-206ENST00000538224 GBP4Q96PP9 640 aa8.12□□□□□ -1.11
USP28-206ENST00000538224 USP26Q9BXU7 913 aa8.12□□□□□ -1.11
USP28-206ENST00000538224 C9orf78Q9NZ63 289 aaPredicted RBP8.12□□□□□ -1.11
USP28-206ENST00000538224 COL5A2P05997 1499 aaPredicted RBP8.12□□□□□ -1.11
USP28-206ENST00000538224 COL15A1P39059 1388 aa8.11□□□□□ -1.11
USP28-206ENST00000538224 UTYO14607 1347 aa8.11□□□□□ -1.11
USP28-206ENST00000538224 SOS2Q07890 1332 aaPredicted RBP8.11□□□□□ -1.11
USP28-206ENST00000538224 TTC41PQ6P2S7 1318 aa8.11□□□□□ -1.11
USP28-206ENST00000538224 WDR17Q8IZU2 1322 aa8.11□□□□□ -1.11
USP28-206ENST00000538224 PCDH11XQ9BZA7 1347 aa8.11□□□□□ -1.11
USP28-206ENST00000538224 PCDH11YQ9BZA8 1340 aa8.11□□□□□ -1.11
USP28-206ENST00000538224 USP42Q9H9J4 1324 aaKnown RBP8.11□□□□□ -1.11
USP28-206ENST00000538224 SRGAP3O43295 1099 aa8.11□□□□□ -1.11
USP28-206ENST00000538224 DDIT3P35638 169 aa8.11□□□□□ -1.11
USP28-206ENST00000538224 LARP1Q6PKG0 1096 aaKnown RBP8.11□□□□□ -1.11
USP28-206ENST00000538224 PPP1R42Q7Z4L9 355 aa8.11□□□□□ -1.11
USP28-206ENST00000538224 OTUD7AQ8TE49 926 aaPredicted RBP8.11□□□□□ -1.11
USP28-206ENST00000538224 FMNL2Q96PY5 1086 aa8.11□□□□□ -1.11
USP28-206ENST00000538224 KIF2CQ99661 725 aa8.11□□□□□ -1.11
USP28-206ENST00000538224 MAP3K2Q9Y2U5 619 aa8.11□□□□□ -1.11
USP28-206ENST00000538224 COL14A1Q05707 1796 aaKnown RBP8.11□□□□□ -1.11
USP28-206ENST00000538224 COL22A1Q8NFW1 1626 aaPredicted RBP8.11□□□□□ -1.11
USP28-206ENST00000538224 TRIM6-TRIM34B2RNG4 842 aa8.1□□□□□ -1.11
USP28-206ENST00000538224 KCNQ3O43525 872 aa8.1□□□□□ -1.11
USP28-206ENST00000538224 SURF6O75683 361 aaKnown RBP8.1□□□□□ -1.11
USP28-206ENST00000538224 SNRPA1P09661 255 aaKnown RBP8.1□□□□□ -1.11
USP28-206ENST00000538224 BRINP3Q76B58 766 aa8.1□□□□□ -1.11
USP28-206ENST00000538224 CNTROBQ8N137 903 aa8.1□□□□□ -1.11
USP28-206ENST00000538224 RHPN1Q8TCX5 695 aa8.1□□□□□ -1.11
USP28-206ENST00000538224 UBE2Q2Q8WVN8 375 aa8.1□□□□□ -1.11
USP28-206ENST00000538224 ESYT1Q9BSJ8 1104 aa8.1□□□□□ -1.11
USP28-206ENST00000538224 CWC22Q9HCG8 908 aaKnown RBP8.1□□□□□ -1.11
USP28-206ENST00000538224 LRP6O75581 1613 aa8.1□□□□□ -1.11
USP28-206ENST00000538224 GOLGA6L22H0YM25 854 aa8.09□□□□□ -1.11
USP28-206ENST00000538224 GRM8O00222 908 aa8.09□□□□□ -1.11
USP28-206ENST00000538224 GLRX3O76003 335 aaKnown RBP8.09□□□□□ -1.11
USP28-206ENST00000538224 MCM4P33991 863 aa8.09□□□□□ -1.11
USP28-206ENST00000538224 NUCB2P80303 420 aa8.09□□□□□ -1.11
USP28-206ENST00000538224 OS9Q13438 667 aaPredicted RBP8.09□□□□□ -1.11
USP28-206ENST00000538224 CLASRPQ8N2M8 674 aaKnown RBP8.09□□□□□ -1.11
USP28-206ENST00000538224 IL17RAQ96F46 866 aa8.09□□□□□ -1.11
USP28-206ENST00000538224 TJP1Q07157 1748 aa8.09□□□□□ -1.11
USP28-206ENST00000538224 TOGARAM1Q9Y4F4 1720 aa8.09□□□□□ -1.11
USP28-206ENST00000538224 ERVV-2B6SEH9 535 aa8.08□□□□□ -1.12
USP28-206ENST00000538224 PLEKHG5O94827 1062 aa8.08□□□□□ -1.12
USP28-206ENST00000538224 NBPF7P0C2Y1 421 aaPredicted RBP8.08□□□□□ -1.12
USP28-206ENST00000538224 CHMLP26374 656 aa8.08□□□□□ -1.12
USP28-206ENST00000538224 CABP4P57796 275 aa8.08□□□□□ -1.12
USP28-206ENST00000538224 RAB3GAP1Q15042 981 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms