RNA–Protein interactions for RNA: ENST00000538176.5

CCDC78-215, Transcript of coiled-coil domain containing 78, humanhuman

TSL 2

Gene CCDC78, Length 1,166 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-215ENST00000538176 NARFQ9UHQ1 456 aa28.42■■■□□ 2.14
CCDC78-215ENST00000538176 ZBTB1Q9Y2K1 713 aa28.42■■■□□ 2.14
CCDC78-215ENST00000538176 MAPK8IP3Q9UPT6 1336 aa28.42■■■□□ 2.14
CCDC78-215ENST00000538176 TAF7Q15545 349 aaPredicted RBP28.41■■■□□ 2.14
CCDC78-215ENST00000538176 C4AP0C0L4 1744 aa28.4■■■□□ 2.14
CCDC78-215ENST00000538176 NPM2Q86SE8 214 aaKnown RBP28.4■■■□□ 2.14
CCDC78-215ENST00000538176 PNISRQ8TF01 805 aaKnown RBP28.4■■■□□ 2.14
CCDC78-215ENST00000538176 SRP68Q9UHB9 627 aaKnown RBP28.4■■■□□ 2.14
CCDC78-215ENST00000538176 COL15A1P39059 1388 aa28.39■■■□□ 2.14
CCDC78-215ENST00000538176 FKBP8Q14318 412 aa28.39■■■□□ 2.14
CCDC78-215ENST00000538176 YBX3P16989 372 aaKnown RBP eCLIP28.38■■■□□ 2.13
CCDC78-215ENST00000538176 CANXP27824 592 aaKnown RBP28.38■■■□□ 2.13
CCDC78-215ENST00000538176 EIF5P55010 431 aaKnown RBP28.38■■■□□ 2.13
CCDC78-215ENST00000538176 NFE2L2Q16236 605 aa28.38■■■□□ 2.13
CCDC78-215ENST00000538176 USPL1Q5W0Q7 1092 aa28.38■■■□□ 2.13
CCDC78-215ENST00000538176 UTRNP46939 3433 aa28.37■■■□□ 2.13
CCDC78-215ENST00000538176 SNRPA1P09661 255 aaKnown RBP28.37■■■□□ 2.13
CCDC78-215ENST00000538176 TM4SF1P30408 202 aa28.37■■■□□ 2.13
CCDC78-215ENST00000538176 IL6STP40189 918 aaPredicted RBP28.37■■■□□ 2.13
CCDC78-215ENST00000538176 DCTN1Q14203 1278 aa28.36■■■□□ 2.13
CCDC78-215ENST00000538176 KIF13BQ9NQT8 1826 aa28.34■■■□□ 2.13
CCDC78-215ENST00000538176 C10orf71Q711Q0 1435 aa28.34■■■□□ 2.13
CCDC78-215ENST00000538176 KCNQ3O43525 872 aa28.33■■■□□ 2.13
CCDC78-215ENST00000538176 PRKRIP1Q9H875 184 aaPredicted RBP28.31■■■□□ 2.12
CCDC78-215ENST00000538176 POLRMTO00411 1230 aaKnown RBP28.3■■■□□ 2.12
CCDC78-215ENST00000538176 LMOD3Q0VAK6 560 aa28.3■■■□□ 2.12
CCDC78-215ENST00000538176 DDR1Q08345 913 aa28.29■■■□□ 2.12
CCDC78-215ENST00000538176 WDR43Q15061 677 aaKnown RBP eCLIP28.29■■■□□ 2.12
CCDC78-215ENST00000538176 ZNF784Q8NCA9 323 aaPredicted RBP28.29■■■□□ 2.12
CCDC78-215ENST00000538176 USP16Q9Y5T5 823 aa28.29■■■□□ 2.12
CCDC78-215ENST00000538176 A1BGP04217 495 aa28.28■■■□□ 2.12
CCDC78-215ENST00000538176 NFIXQ14938 502 aa28.28■■■□□ 2.12
CCDC78-215ENST00000538176 GOLGB1Q14789 3259 aaKnown RBP28.28■■■□□ 2.12
CCDC78-215ENST00000538176 DLG5Q8TDM6 1919 aa28.28■■■□□ 2.12
CCDC78-215ENST00000538176 PXDNLA1KZ92 1463 aa28.27■■■□□ 2.12
CCDC78-215ENST00000538176 A0A0G2JLW4 131 aa28.27■■■□□ 2.12
CCDC78-215ENST00000538176 RIPK4P57078 832 aa28.27■■■□□ 2.12
CCDC78-215ENST00000538176 BCL2L12Q9HB09 334 aa28.27■■■□□ 2.12
CCDC78-215ENST00000538176 ZNF330Q9Y3S2 320 aaPredicted RBP28.26■■■□□ 2.11
CCDC78-215ENST00000538176 DPEP1P16444 411 aa28.25■■■□□ 2.11
CCDC78-215ENST00000538176 BABAM1Q9NWV8 329 aa28.25■■■□□ 2.11
CCDC78-215ENST00000538176 SERPINB2P05120 415 aa28.24■■■□□ 2.11
CCDC78-215ENST00000538176 PIM2Q9P1W9 311 aa28.24■■■□□ 2.11
CCDC78-215ENST00000538176 RGL2O15211 777 aa28.23■■■□□ 2.11
CCDC78-215ENST00000538176 TMPOP42166 694 aaKnown RBP28.23■■■□□ 2.11
CCDC78-215ENST00000538176 RUNDC1Q96C34 613 aa28.23■■■□□ 2.11
CCDC78-215ENST00000538176 MIS18AQ9NYP9 233 aa28.23■■■□□ 2.11
CCDC78-215ENST00000538176 TBC1D2BQ9UPU7 963 aa28.23■■■□□ 2.11
CCDC78-215ENST00000538176 CLEC4GQ6UXB4 293 aa28.22■■■□□ 2.11
CCDC78-215ENST00000538176 BCS1LQ9Y276 419 aa28.22■■■□□ 2.11
CCDC78-215ENST00000538176 DZIP3Q86Y13 1208 aaKnown RBP28.21■■■□□ 2.11
CCDC78-215ENST00000538176 GIGYF1O75420 1035 aaPredicted RBP28.2■■■□□ 2.1
CCDC78-215ENST00000538176 KCNA3P22001 575 aa28.2■■■□□ 2.1
CCDC78-215ENST00000538176 EIF4A1P60842 406 aaKnown RBP28.2■■■□□ 2.1
CCDC78-215ENST00000538176 PDZRN3Q9UPQ7 1066 aa28.2■■■□□ 2.1
CCDC78-215ENST00000538176 PRAMEF22A3QJZ6 481 aa28.19■■■□□ 2.1
CCDC78-215ENST00000538176 ZNF652Q9Y2D9 606 aa28.19■■■□□ 2.1
CCDC78-215ENST00000538176 N4BP2Q86UW6 1770 aaPredicted RBP28.19■■■□□ 2.1
CCDC78-215ENST00000538176 KIAA1551Q9HCM1 1747 aa28.18■■■□□ 2.1
CCDC78-215ENST00000538176 CAMTA2O94983 1202 aa28.18■■■□□ 2.1
CCDC78-215ENST00000538176 SETDB2Q96T68 719 aa28.18■■■□□ 2.1
CCDC78-215ENST00000538176 WWC3Q9ULE0 1092 aa28.18■■■□□ 2.1
CCDC78-215ENST00000538176 ADAMTS8Q9UP79 889 aa28.18■■■□□ 2.1
CCDC78-215ENST00000538176 DALRD3Q5D0E6 543 aaKnown RBP28.17■■■□□ 2.1
CCDC78-215ENST00000538176 TBC1D9BQ66K14 1250 aa28.17■■■□□ 2.1
CCDC78-215ENST00000538176 BICDL1Q6ZP65 573 aa28.17■■■□□ 2.1
CCDC78-215ENST00000538176 THUMPD2Q9BTF0 503 aaKnown RBP28.17■■■□□ 2.1
CCDC78-215ENST00000538176 CARMIL3Q8ND23 1372 aa28.16■■■□□ 2.1
CCDC78-215ENST00000538176 TSPYL4Q9UJ04 414 aa28.16■■■□□ 2.1
CCDC78-215ENST00000538176 NRXN2Q9P2S2 1712 aa28.15■■■□□ 2.1
CCDC78-215ENST00000538176 KDM3BQ7LBC6 1761 aa28.14■■■□□ 2.1
CCDC78-215ENST00000538176 ZNF316A6NFI3 1004 aaPredicted RBP28.14■■■□□ 2.1
CCDC78-215ENST00000538176 AFDNP55196 1824 aaKnown RBP28.13■■■□□ 2.09
CCDC78-215ENST00000538176 NBPF26B4DH59 902 aa28.13■■■□□ 2.09
CCDC78-215ENST00000538176 NBPF10Q6P3W6 841 aaKnown RBP28.13■■■□□ 2.09
CCDC78-215ENST00000538176 CCDC146Q8IYE0 955 aa28.13■■■□□ 2.09
CCDC78-215ENST00000538176 NBPF15Q8N660 670 aa28.13■■■□□ 2.09
CCDC78-215ENST00000538176 SCN7AQ01118 1682 aa28.13■■■□□ 2.09
CCDC78-215ENST00000538176 H0YIN7 160 aa28.12■■■□□ 2.09
CCDC78-215ENST00000538176 PDE6BP35913 854 aa28.12■■■□□ 2.09
CCDC78-215ENST00000538176 ARHGAP27Q6ZUM4 889 aa28.12■■■□□ 2.09
CCDC78-215ENST00000538176 BRIP1Q9BX63 1249 aa28.12■■■□□ 2.09
CCDC78-215ENST00000538176 BRCA1P38398 1863 aaKnown RBP28.12■■■□□ 2.09
CCDC78-215ENST00000538176 ERBB4Q15303 1308 aa28.12■■■□□ 2.09
CCDC78-215ENST00000538176 CHRNA5P30532 468 aa28.11■■■□□ 2.09
CCDC78-215ENST00000538176 NEUROD2Q15784 382 aa28.11■■■□□ 2.09
CCDC78-215ENST00000538176 NPHP1O15259 732 aa28.1■■■□□ 2.09
CCDC78-215ENST00000538176 PIP4K2AP48426 406 aaPredicted RBP28.1■■■□□ 2.09
CCDC78-215ENST00000538176 LAMB4A4D0S4 1761 aa28.09■■■□□ 2.09
CCDC78-215ENST00000538176 ERVV-1B6SEH8 477 aa28.08■■■□□ 2.09
CCDC78-215ENST00000538176 ST5P78524 1137 aa28.08■■■□□ 2.09
CCDC78-215ENST00000538176 PRR5LQ6MZQ0 368 aa28.08■■■□□ 2.09
CCDC78-215ENST00000538176 CNBD1Q8NA66 436 aa28.08■■■□□ 2.09
CCDC78-215ENST00000538176 RRP7AQ9Y3A4 280 aaKnown RBP28.08■■■□□ 2.09
CCDC78-215ENST00000538176 ARFGEF1Q9Y6D6 1849 aa28.08■■■□□ 2.09
CCDC78-215ENST00000538176 C2CD5Q86YS7 1000 aa28.07■■■□□ 2.08
CCDC78-215ENST00000538176 TTLL6Q8N841 843 aa28.07■■■□□ 2.08
CCDC78-215ENST00000538176 CHL1O00533 1208 aa28.06■■■□□ 2.08
CCDC78-215ENST00000538176 TPTE2Q6XPS3 522 aa28.06■■■□□ 2.08
CCDC78-215ENST00000538176 TRIM35Q9UPQ4 493 aa28.06■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms