RNA–Protein interactions for RNA: ENST00000538174.6

PTPRB-203, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best)

Gene PTPRB, Length 2,661 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-203ENST00000538174 SMC1BQ8NDV3 1235 aa8.6□□□□□ -1.03
PTPRB-203ENST00000538174 RGL3Q3MIN7 710 aa8.6□□□□□ -1.03
PTPRB-203ENST00000538174 ERBB3P21860 1342 aa8.6□□□□□ -1.03
PTPRB-203ENST00000538174 E9PSI1 815 aa8.59□□□□□ -1.03
PTPRB-203ENST00000538174 SSFA2P28290 1259 aa8.59□□□□□ -1.03
PTPRB-203ENST00000538174 SLFN5Q08AF3 891 aa8.59□□□□□ -1.03
PTPRB-203ENST00000538174 SMARCC1Q92922 1105 aaPredicted RBP8.59□□□□□ -1.03
PTPRB-203ENST00000538174 GOLGA2Q08379 1002 aa8.59□□□□□ -1.03
PTPRB-203ENST00000538174 PDE3AQ14432 1141 aa8.59□□□□□ -1.03
PTPRB-203ENST00000538174 WDR63Q8IWG1 891 aa8.59□□□□□ -1.03
PTPRB-203ENST00000538174 PDGFDQ9GZP0 370 aaPredicted RBP8.59□□□□□ -1.03
PTPRB-203ENST00000538174 DUSP27Q5VZP5 1158 aa8.58□□□□□ -1.04
PTPRB-203ENST00000538174 CNGB1Q14028 1251 aaPredicted RBP8.58□□□□□ -1.04
PTPRB-203ENST00000538174 WDR43Q15061 677 aaKnown RBP eCLIP8.58□□□□□ -1.04
PTPRB-203ENST00000538174 MINK1Q8N4C8 1332 aaPredicted RBP8.58□□□□□ -1.04
PTPRB-203ENST00000538174 NRXN2Q9P2S2 1712 aa8.57□□□□□ -1.04
PTPRB-203ENST00000538174 APBB1O00213 710 aa8.57□□□□□ -1.04
PTPRB-203ENST00000538174 RTL5Q5HYW3 569 aaPredicted RBP8.57□□□□□ -1.04
PTPRB-203ENST00000538174 CENPQQ7L2Z9 268 aaPredicted RBP8.57□□□□□ -1.04
PTPRB-203ENST00000538174 AEBP1Q8IUX7 1158 aa8.57□□□□□ -1.04
PTPRB-203ENST00000538174 NLGN2Q8NFZ4 835 aa8.57□□□□□ -1.04
PTPRB-203ENST00000538174 LRRC4BQ9NT99 713 aa8.57□□□□□ -1.04
PTPRB-203ENST00000538174 COL5A3P25940 1745 aaPredicted RBP8.57□□□□□ -1.04
PTPRB-203ENST00000538174 MFAP1P55081 439 aaKnown RBP8.57□□□□□ -1.04
PTPRB-203ENST00000538174 CD163L1Q9NR16 1453 aa8.57□□□□□ -1.04
PTPRB-203ENST00000538174 WWC3Q9ULE0 1092 aa8.57□□□□□ -1.04
PTPRB-203ENST00000538174 EDC4Q6P2E9 1401 aaKnown RBP8.56□□□□□ -1.04
PTPRB-203ENST00000538174 IL16Q14005 1332 aa8.56□□□□□ -1.04
PTPRB-203ENST00000538174 TTC21BQ7Z4L5 1316 aa8.56□□□□□ -1.04
PTPRB-203ENST00000538174 EVC2Q86UK5 1308 aa8.56□□□□□ -1.04
PTPRB-203ENST00000538174 ARFGEF2Q9Y6D5 1785 aa8.56□□□□□ -1.04
PTPRB-203ENST00000538174 DICER1Q9UPY3 1922 aaKnown RBP8.56□□□□□ -1.04
PTPRB-203ENST00000538174 ADAMTS8Q9UP79 889 aa8.56□□□□□ -1.04
PTPRB-203ENST00000538174 PDZRN3Q9UPQ7 1066 aa8.56□□□□□ -1.04
PTPRB-203ENST00000538174 IGSF1Q8N6C5 1336 aa8.55□□□□□ -1.04
PTPRB-203ENST00000538174 SBF1O95248 1867 aa8.55□□□□□ -1.04
PTPRB-203ENST00000538174 TMTC2Q8N394 836 aa8.55□□□□□ -1.04
PTPRB-203ENST00000538174 TIAM2Q8IVF5 1701 aa8.55□□□□□ -1.04
PTPRB-203ENST00000538174 IPO9Q96P70 1041 aaKnown RBP8.55□□□□□ -1.04
PTPRB-203ENST00000538174 PNNQ9H307 717 aaKnown RBP8.55□□□□□ -1.04
PTPRB-203ENST00000538174 TFCP2L1Q9NZI6 479 aa8.55□□□□□ -1.04
PTPRB-203ENST00000538174 LAS1LQ9Y4W2 734 aaKnown RBP8.55□□□□□ -1.04
PTPRB-203ENST00000538174 COL13A1Q5TAT6 717 aaPredicted RBP8.54□□□□□ -1.04
PTPRB-203ENST00000538174 TMCO4Q5TGY1 634 aa8.54□□□□□ -1.04
PTPRB-203ENST00000538174 C16orf71Q8IYS4 520 aaPredicted RBP8.54□□□□□ -1.04
PTPRB-203ENST00000538174 ITGB4P16144 1822 aa8.54□□□□□ -1.04
PTPRB-203ENST00000538174 LOC102724159A0A0B4J2E5 919 aa8.54□□□□□ -1.04
PTPRB-203ENST00000538174 NLRP6P59044 892 aa8.54□□□□□ -1.04
PTPRB-203ENST00000538174 PWP2Q15269 919 aaKnown RBP8.54□□□□□ -1.04
PTPRB-203ENST00000538174 HSP90AB4PQ58FF6 505 aa8.54□□□□□ -1.04
PTPRB-203ENST00000538174 B4GALNT3Q6L9W6 998 aa8.54□□□□□ -1.04
PTPRB-203ENST00000538174 BACH2Q9BYV9 841 aa8.54□□□□□ -1.04
PTPRB-203ENST00000538174 COL3A1P02461 1466 aaPredicted RBP8.53□□□□□ -1.04
PTPRB-203ENST00000538174 COL23A1Q86Y22 540 aaPredicted RBP8.53□□□□□ -1.04
PTPRB-203ENST00000538174 EXOC8Q8IYI6 725 aa8.53□□□□□ -1.04
PTPRB-203ENST00000538174 SGSM3Q96HU1 749 aa8.53□□□□□ -1.04
PTPRB-203ENST00000538174 DDRGK1Q96HY6 314 aa8.53□□□□□ -1.04
PTPRB-203ENST00000538174 TRAK1Q9UPV9 953 aa8.53□□□□□ -1.04
PTPRB-203ENST00000538174 KIF20BQ96Q89 1820 aa8.53□□□□□ -1.04
PTPRB-203ENST00000538174 ANP32AP39687 249 aaKnown RBP8.53□□□□□ -1.04
PTPRB-203ENST00000538174 NEUROD2Q15784 382 aa8.53□□□□□ -1.04
PTPRB-203ENST00000538174 RUNDC1Q96C34 613 aa8.53□□□□□ -1.04
PTPRB-203ENST00000538174 SCN4AP35499 1836 aa8.52□□□□□ -1.04
PTPRB-203ENST00000538174 CLGNO14967 610 aa8.52□□□□□ -1.05
PTPRB-203ENST00000538174 CARD14Q9BXL6 1004 aa8.52□□□□□ -1.05
PTPRB-203ENST00000538174 KAT6BQ8WYB5 2073 aa8.52□□□□□ -1.05
PTPRB-203ENST00000538174 MSH5O43196 834 aa8.52□□□□□ -1.05
PTPRB-203ENST00000538174 PHF14O94880 888 aa8.52□□□□□ -1.05
PTPRB-203ENST00000538174 CTCFP49711 727 aaPredicted RBP8.52□□□□□ -1.05
PTPRB-203ENST00000538174 RC3H1Q5TC82 1133 aaKnown RBP8.52□□□□□ -1.05
PTPRB-203ENST00000538174 PTF1AQ7RTS3 328 aa8.52□□□□□ -1.05
PTPRB-203ENST00000538174 IL27Q8NEV9 243 aa8.52□□□□□ -1.05
PTPRB-203ENST00000538174 DCAF5Q96JK2 942 aa8.52□□□□□ -1.05
PTPRB-203ENST00000538174 CFAP53Q96M91 514 aa8.52□□□□□ -1.05
PTPRB-203ENST00000538174 ADAMTSL1Q8N6G6 1762 aa8.51□□□□□ -1.05
PTPRB-203ENST00000538174 NKX1-1Q15270 411 aaPredicted RBP8.51□□□□□ -1.05
PTPRB-203ENST00000538174 CC2D1BQ5T0F9 858 aaKnown RBP8.51□□□□□ -1.05
PTPRB-203ENST00000538174 IP6K1Q92551 441 aa8.51□□□□□ -1.05
PTPRB-203ENST00000538174 CREBZFQ9NS37 354 aa8.51□□□□□ -1.05
PTPRB-203ENST00000538174 AXIN2Q9Y2T1 843 aa8.51□□□□□ -1.05
PTPRB-203ENST00000538174 HSPA1AP0DMV8 641 aaKnown RBP8.51□□□□□ -1.05
PTPRB-203ENST00000538174 HSPA1BP0DMV9 641 aaKnown RBP8.51□□□□□ -1.05
PTPRB-203ENST00000538174 CCNL1Q9UK58 526 aaPredicted RBP8.51□□□□□ -1.05
PTPRB-203ENST00000538174 NOP58Q9Y2X3 529 aaKnown RBP8.51□□□□□ -1.05
PTPRB-203ENST00000538174 SPRYD3Q8NCJ5 442 aa8.5□□□□□ -1.05
PTPRB-203ENST00000538174 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.5□□□□□ -1.05
PTPRB-203ENST00000538174 LTBP3Q9NS15 1303 aa8.49□□□□□ -1.05
PTPRB-203ENST00000538174 MAPK8IP3Q9UPT6 1336 aa8.49□□□□□ -1.05
PTPRB-203ENST00000538174 FOXD4L6Q3SYB3 417 aaPredicted RBP8.49□□□□□ -1.05
PTPRB-203ENST00000538174 FOXD4L3Q6VB84 417 aaPredicted RBP8.49□□□□□ -1.05
PTPRB-203ENST00000538174 EXOC6Q8TAG9 804 aa8.49□□□□□ -1.05
PTPRB-203ENST00000538174 ZNF622Q969S3 477 aaKnown RBP eCLIP8.49□□□□□ -1.05
PTPRB-203ENST00000538174 CNTNAP1P78357 1384 aa8.49□□□□□ -1.05
PTPRB-203ENST00000538174 BRD1O95696 1058 aa8.49□□□□□ -1.05
PTPRB-203ENST00000538174 CSB-PGBD3P0DP91 1061 aa8.49□□□□□ -1.05
PTPRB-203ENST00000538174 NLGN1Q8N2Q7 840 aa8.49□□□□□ -1.05
PTPRB-203ENST00000538174 CCDC87Q9NVE4 849 aa8.49□□□□□ -1.05
PTPRB-203ENST00000538174 SOX12O15370 315 aa8.48□□□□□ -1.05
PTPRB-203ENST00000538174 KDRP35968 1356 aa8.48□□□□□ -1.05
PTPRB-203ENST00000538174 PCDH11XQ9BZA7 1347 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms