RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 SRGAP3O43295 1099 aa16.06■□□□□ 0.16
LDLR-203ENST00000535915 RAB11FIP3O75154 756 aa16.06■□□□□ 0.16
LDLR-203ENST00000535915 NBPF7P0C2Y1 421 aaPredicted RBP16.06■□□□□ 0.16
LDLR-203ENST00000535915 PKP1Q13835 747 aa16.06■□□□□ 0.16
LDLR-203ENST00000535915 NUTM1Q86Y26 1132 aa16.06■□□□□ 0.16
LDLR-203ENST00000535915 UNC5CLQ8IV45 518 aa16.06■□□□□ 0.16
LDLR-203ENST00000535915 DDX49Q9Y6V7 483 aaKnown RBP16.06■□□□□ 0.16
LDLR-203ENST00000535915 GCP02774 474 aa16.05■□□□□ 0.16
LDLR-203ENST00000535915 ANXA1P04083 346 aa16.05■□□□□ 0.16
LDLR-203ENST00000535915 CYP2E1P05181 493 aaPredicted RBP16.05■□□□□ 0.16
LDLR-203ENST00000535915 MCTP1Q6DN14 999 aa16.05■□□□□ 0.16
LDLR-203ENST00000535915 ORAI2Q96SN7 254 aa16.05■□□□□ 0.16
LDLR-203ENST00000535915 AOX1Q06278 1338 aa16.05■□□□□ 0.16
LDLR-203ENST00000535915 C1orf141Q5JVX7 400 aa16.05■□□□□ 0.16
LDLR-203ENST00000535915 POLA2Q14181 598 aa16.04■□□□□ 0.16
LDLR-203ENST00000535915 AMOTQ4VCS5 1084 aa16.04■□□□□ 0.16
LDLR-203ENST00000535915 BEND3Q5T5X7 828 aa16.04■□□□□ 0.16
LDLR-203ENST00000535915 GAS2L3Q86XJ1 694 aa16.04■□□□□ 0.16
LDLR-203ENST00000535915 KLHL40Q2TBA0 621 aa16.04■□□□□ 0.16
LDLR-203ENST00000535915 RHPN1Q8TCX5 695 aa16.04■□□□□ 0.16
LDLR-203ENST00000535915 PALD1Q9ULE6 856 aa16.04■□□□□ 0.16
LDLR-203ENST00000535915 ARHGEF25Q86VW2 580 aa16.03■□□□□ 0.16
LDLR-203ENST00000535915 PXDNQ92626 1479 aa16.03■□□□□ 0.16
LDLR-203ENST00000535915 RGPD5Q99666 1765 aa16.03■□□□□ 0.16
LDLR-203ENST00000535915 RNMTO43148 476 aaKnown RBP16.03■□□□□ 0.16
LDLR-203ENST00000535915 KIF1BPQ96EK5 621 aa16.03■□□□□ 0.16
LDLR-203ENST00000535915 ANKRD24Q8TF21 1146 aa16.02■□□□□ 0.16
LDLR-203ENST00000535915 TMX3Q96JJ7 454 aa16.02■□□□□ 0.16
LDLR-203ENST00000535915 DBF4Q9UBU7 674 aaPredicted RBP16.02■□□□□ 0.16
LDLR-203ENST00000535915 MAP4K4O95819 1239 aaPredicted RBP16.02■□□□□ 0.15
LDLR-203ENST00000535915 MCM2P49736 904 aa16.02■□□□□ 0.15
LDLR-203ENST00000535915 ANAPC15P60006 121 aa16.02■□□□□ 0.15
LDLR-203ENST00000535915 ADCY9O60503 1353 aa16.02■□□□□ 0.15
LDLR-203ENST00000535915 SLIT3O75094 1523 aa16.01■□□□□ 0.15
LDLR-203ENST00000535915 NPHP4O75161 1426 aaPredicted RBP16.01■□□□□ 0.15
LDLR-203ENST00000535915 NCAPD2Q15021 1401 aa16.01■□□□□ 0.15
LDLR-203ENST00000535915 RRAGDQ9NQL2 400 aaPredicted RBP16.01■□□□□ 0.15
LDLR-203ENST00000535915 NCLP19338 710 aaKnown RBP16■□□□□ 0.15
LDLR-203ENST00000535915 NOL8Q76FK4 1167 aaKnown RBP16■□□□□ 0.15
LDLR-203ENST00000535915 PI4K2BQ8TCG2 481 aa16■□□□□ 0.15
LDLR-203ENST00000535915 ZDHHC9Q9Y397 364 aa16■□□□□ 0.15
LDLR-203ENST00000535915 OS9Q13438 667 aaPredicted RBP15.99■□□□□ 0.15
LDLR-203ENST00000535915 LMBRD1Q9NUN5 540 aa15.99■□□□□ 0.15
LDLR-203ENST00000535915 MAP3K2Q9Y2U5 619 aa15.99■□□□□ 0.15
LDLR-203ENST00000535915 SIPA1L3O60292 1781 aaPredicted RBP15.99■□□□□ 0.15
LDLR-203ENST00000535915 HSP90AB4PQ58FF6 505 aa15.99■□□□□ 0.15
LDLR-203ENST00000535915 IL25Q9H293 177 aa15.99■□□□□ 0.15
LDLR-203ENST00000535915 TRPM3Q9HCF6 1732 aaPredicted RBP15.99■□□□□ 0.15
LDLR-203ENST00000535915 GIGYF1O75420 1035 aaPredicted RBP15.98■□□□□ 0.15
LDLR-203ENST00000535915 C9orf78Q9NZ63 289 aaPredicted RBP15.98■□□□□ 0.15
LDLR-203ENST00000535915 AXIN2Q9Y2T1 843 aa15.98■□□□□ 0.15
LDLR-203ENST00000535915 OVOS2A0A0G2JMS6 1433 aa15.98■□□□□ 0.15
LDLR-203ENST00000535915 ADAMTSL3P82987 1691 aa15.98■□□□□ 0.15
LDLR-203ENST00000535915 PROSER3Q2NL68 480 aa15.98■□□□□ 0.15
LDLR-203ENST00000535915 KRT28Q7Z3Y7 464 aa15.98■□□□□ 0.15
LDLR-203ENST00000535915 CNTROBQ8N137 903 aa15.98■□□□□ 0.15
LDLR-203ENST00000535915 UPF3BQ9BZI7 483 aaKnown RBP15.98■□□□□ 0.15
LDLR-203ENST00000535915 CAMTA1Q9Y6Y1 1673 aa15.97■□□□□ 0.15
LDLR-203ENST00000535915 PRPF40AO75400 957 aaKnown RBP15.97■□□□□ 0.15
LDLR-203ENST00000535915 PRAMEF22A3QJZ6 481 aa15.97■□□□□ 0.15
LDLR-203ENST00000535915 FOXD4L5Q5VV16 416 aaPredicted RBP15.97■□□□□ 0.15
LDLR-203ENST00000535915 CAVIN1Q6NZI2 390 aaKnown RBP15.97■□□□□ 0.15
LDLR-203ENST00000535915 KSR2Q6VAB6 950 aa15.97■□□□□ 0.15
LDLR-203ENST00000535915 FOXD4L4Q8WXT5 416 aaPredicted RBP15.97■□□□□ 0.15
LDLR-203ENST00000535915 EPB41L2O43491 1005 aaKnown RBP15.96■□□□□ 0.15
LDLR-203ENST00000535915 CUL4AQ13619 759 aa15.96■□□□□ 0.15
LDLR-203ENST00000535915 ALDH1L1O75891 902 aa15.96■□□□□ 0.15
LDLR-203ENST00000535915 HSPA4P34932 840 aa15.96■□□□□ 0.15
LDLR-203ENST00000535915 CWF19L2Q2TBE0 894 aaKnown RBP15.95■□□□□ 0.14
LDLR-203ENST00000535915 SGSM2O43147 1006 aa15.95■□□□□ 0.14
LDLR-203ENST00000535915 MTX1Q13505 466 aa15.95■□□□□ 0.14
LDLR-203ENST00000535915 PROSER2Q86WR7 435 aaPredicted RBP15.95■□□□□ 0.14
LDLR-203ENST00000535915 VSIG10Q8N0Z9 540 aa15.95■□□□□ 0.14
LDLR-203ENST00000535915 IL17RAQ96F46 866 aa15.95■□□□□ 0.14
LDLR-203ENST00000535915 HEG1Q9ULI3 1381 aa15.95■□□□□ 0.14
LDLR-203ENST00000535915 KIF1AQ12756 1690 aa15.94■□□□□ 0.14
LDLR-203ENST00000535915 CLASRPQ8N2M8 674 aaKnown RBP15.94■□□□□ 0.14
LDLR-203ENST00000535915 INTS4Q96HW7 963 aaKnown RBP15.94■□□□□ 0.14
LDLR-203ENST00000535915 HYPKQ9NX55 129 aa15.94■□□□□ 0.14
LDLR-203ENST00000535915 ZC3H6P61129 1189 aaKnown RBP15.94■□□□□ 0.14
LDLR-203ENST00000535915 CHAMP1Q96JM3 812 aa15.94■□□□□ 0.14
LDLR-203ENST00000535915 CRYBG1Q9Y4K1 1723 aa15.94■□□□□ 0.14
LDLR-203ENST00000535915 ZSCAN23Q3MJ62 389 aa15.93■□□□□ 0.14
LDLR-203ENST00000535915 TTC41PQ6P2S7 1318 aa15.93■□□□□ 0.14
LDLR-203ENST00000535915 CWC27Q6UX04 472 aaKnown RBP15.93■□□□□ 0.14
LDLR-203ENST00000535915 RAD50Q92878 1312 aa15.93■□□□□ 0.14
LDLR-203ENST00000535915 TRIM44Q96DX7 344 aaPredicted RBP15.93■□□□□ 0.14
LDLR-203ENST00000535915 HDAC5Q9UQL6 1122 aa15.93■□□□□ 0.14
LDLR-203ENST00000535915 GLRX3O76003 335 aaKnown RBP15.93■□□□□ 0.14
LDLR-203ENST00000535915 AIMP1Q12904 312 aaKnown RBP15.93■□□□□ 0.14
LDLR-203ENST00000535915 USP42Q9H9J4 1324 aaKnown RBP15.93■□□□□ 0.14
LDLR-203ENST00000535915 NASPP49321 788 aaPredicted RBP15.92■□□□□ 0.14
LDLR-203ENST00000535915 ZNF445P59923 1031 aa15.92■□□□□ 0.14
LDLR-203ENST00000535915 KIAA1211Q6ZU35 1233 aa15.92■□□□□ 0.14
LDLR-203ENST00000535915 PA2G4Q9UQ80 394 aaKnown RBP15.92■□□□□ 0.14
LDLR-203ENST00000535915 SCN11AQ9UI33 1791 aa15.92■□□□□ 0.14
LDLR-203ENST00000535915 ERBB3P21860 1342 aa15.92■□□□□ 0.14
LDLR-203ENST00000535915 BRD1O95696 1058 aa15.92■□□□□ 0.14
LDLR-203ENST00000535915 DDX58O95786 925 aaKnown RBP15.92■□□□□ 0.14
LDLR-203ENST00000535915 GPT2Q8TD30 523 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms