RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 ZIC2O95409 532 aaPredicted RBP9.02□□□□□ -0.97
USP28-202ENST00000535607 NR3C2P08235 984 aa9.02□□□□□ -0.97
USP28-202ENST00000535607 SCTRP47872 440 aa9.02□□□□□ -0.97
USP28-202ENST00000535607 TMEM164Q5U3C3 297 aa9.02□□□□□ -0.97
USP28-202ENST00000535607 STK32AQ8WU08 396 aa9.02□□□□□ -0.97
USP28-202ENST00000535607 PDZRN3Q9UPQ7 1066 aa9.02□□□□□ -0.97
USP28-202ENST00000535607 TROQ12816 1431 aaPredicted RBP9.02□□□□□ -0.97
USP28-202ENST00000535607 MTUS2Q5JR59 1369 aa9.01□□□□□ -0.97
USP28-202ENST00000535607 J3QL48 77 aa9.01□□□□□ -0.97
USP28-202ENST00000535607 UPP2O95045 317 aa9.01□□□□□ -0.97
USP28-202ENST00000535607 GNRH1P01148 92 aa9.01□□□□□ -0.97
USP28-202ENST00000535607 PRR20EP86478 221 aa9.01□□□□□ -0.97
USP28-202ENST00000535607 PRR20CP86479 221 aa9.01□□□□□ -0.97
USP28-202ENST00000535607 PRR20DP86480 221 aa9.01□□□□□ -0.97
USP28-202ENST00000535607 PRR20BP86481 221 aa9.01□□□□□ -0.97
USP28-202ENST00000535607 PRR20AP86496 221 aa9.01□□□□□ -0.97
USP28-202ENST00000535607 SWI5Q1ZZU3 235 aa9.01□□□□□ -0.97
USP28-202ENST00000535607 ZMIZ1Q9ULJ6 1067 aa9.01□□□□□ -0.97
USP28-202ENST00000535607 MAGI3Q5TCQ9 1506 aa9□□□□□ -0.97
USP28-202ENST00000535607 RRBP1Q9P2E9 1410 aaKnown RBP9□□□□□ -0.97
USP28-202ENST00000535607 ANP32CO43423 234 aa9□□□□□ -0.97
USP28-202ENST00000535607 BRD1O95696 1058 aa9□□□□□ -0.97
USP28-202ENST00000535607 GTF2E1P29083 439 aaPredicted RBP9□□□□□ -0.97
USP28-202ENST00000535607 PCDHGA11Q9Y5H2 935 aa9□□□□□ -0.97
USP28-202ENST00000535607 WDR7Q9Y4E6 1490 aa9□□□□□ -0.97
USP28-202ENST00000535607 ITSN2Q9NZM3 1697 aa9□□□□□ -0.97
USP28-202ENST00000535607 ADH1AP07327 375 aa8.99□□□□□ -0.97
USP28-202ENST00000535607 GDF10P55107 478 aa8.99□□□□□ -0.97
USP28-202ENST00000535607 NLRP3Q96P20 1036 aa8.99□□□□□ -0.97
USP28-202ENST00000535607 OSBPL3Q9H4L5 887 aa8.99□□□□□ -0.97
USP28-202ENST00000535607 TOR4AQ9NXH8 423 aa8.99□□□□□ -0.97
USP28-202ENST00000535607 MTMR7Q9Y216 660 aa8.99□□□□□ -0.97
USP28-202ENST00000535607 SFI1A8K8P3 1242 aa8.98□□□□□ -0.97
USP28-202ENST00000535607 ITPKCQ96DU7 683 aa8.98□□□□□ -0.97
USP28-202ENST00000535607 KIAA1024Q9UPX6 916 aa8.98□□□□□ -0.97
USP28-202ENST00000535607 NCOA2Q15596 1464 aa8.97□□□□□ -0.97
USP28-202ENST00000535607 ARAP3Q8WWN8 1544 aa8.97□□□□□ -0.97
USP28-202ENST00000535607 ZBTB7BO15156 539 aaPredicted RBP8.97□□□□□ -0.97
USP28-202ENST00000535607 LILRA1O75019 489 aa8.97□□□□□ -0.97
USP28-202ENST00000535607 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.97□□□□□ -0.97
USP28-202ENST00000535607 CHMP3Q9Y3E7 222 aa8.97□□□□□ -0.97
USP28-202ENST00000535607 FAM187AA6NFU0 413 aa8.96□□□□□ -0.98
USP28-202ENST00000535607 TMEM88BA6NKF7 163 aa8.96□□□□□ -0.98
USP28-202ENST00000535607 M0R2N6 131 aa8.96□□□□□ -0.98
USP28-202ENST00000535607 SMPD1P17405 629 aa8.96□□□□□ -0.98
USP28-202ENST00000535607 KCNA1Q09470 495 aa8.96□□□□□ -0.98
USP28-202ENST00000535607 VTI1AQ96AJ9 217 aa8.96□□□□□ -0.98
USP28-202ENST00000535607 ARHGEF10LQ9HCE6 1279 aa8.96□□□□□ -0.98
USP28-202ENST00000535607 SERTAD1Q9UHV2 236 aa8.96□□□□□ -0.98
USP28-202ENST00000535607 ABCA9Q8IUA7 1624 aa8.95□□□□□ -0.98
USP28-202ENST00000535607 MEN1O00255 615 aa8.95□□□□□ -0.98
USP28-202ENST00000535607 CAPN5O15484 640 aaPredicted RBP8.95□□□□□ -0.98
USP28-202ENST00000535607 INHAP05111 366 aa8.95□□□□□ -0.98
USP28-202ENST00000535607 ATP2B4P23634 1241 aa8.95□□□□□ -0.98
USP28-202ENST00000535607 RELBQ01201 579 aa8.95□□□□□ -0.98
USP28-202ENST00000535607 CLP1Q92989 425 aaKnown RBP8.95□□□□□ -0.98
USP28-202ENST00000535607 ZFAND3Q9H8U3 227 aa8.95□□□□□ -0.98
USP28-202ENST00000535607 RAB6BQ9NRW1 208 aa8.95□□□□□ -0.98
USP28-202ENST00000535607 ZNF358Q9NW07 568 aa8.95□□□□□ -0.98
USP28-202ENST00000535607 CCNB3Q8WWL7 1395 aa8.95□□□□□ -0.98
USP28-202ENST00000535607 MYOM3Q5VTT5 1437 aa8.95□□□□□ -0.98
USP28-202ENST00000535607 ASXL2Q76L83 1435 aa8.95□□□□□ -0.98
USP28-202ENST00000535607 ABCC10Q5T3U5 1492 aa8.95□□□□□ -0.98
USP28-202ENST00000535607 PREX2Q70Z35 1606 aa8.94□□□□□ -0.98
USP28-202ENST00000535607 CARNS1A5YM72 827 aa8.94□□□□□ -0.98
USP28-202ENST00000535607 PLEKHD1A6NEE1 506 aa8.94□□□□□ -0.98
USP28-202ENST00000535607 PRMT3O60678 531 aa8.94□□□□□ -0.98
USP28-202ENST00000535607 TIMP2P16035 220 aa8.94□□□□□ -0.98
USP28-202ENST00000535607 ADD1P35611 737 aaKnown RBP8.94□□□□□ -0.98
USP28-202ENST00000535607 CBLBQ13191 982 aa8.94□□□□□ -0.98
USP28-202ENST00000535607 PKDCCQ504Y2 493 aa8.94□□□□□ -0.98
USP28-202ENST00000535607 TSEN2Q8NCE0 465 aaKnown RBP8.94□□□□□ -0.98
USP28-202ENST00000535607 TSEN34Q9BSV6 310 aaKnown RBP8.94□□□□□ -0.98
USP28-202ENST00000535607 MIA2Q96PC5 1412 aa8.94□□□□□ -0.98
USP28-202ENST00000535607 MYO5CQ9NQX4 1742 aa8.94□□□□□ -0.98
USP28-202ENST00000535607 WASLO00401 505 aaPredicted RBP8.93□□□□□ -0.98
USP28-202ENST00000535607 PTGIRP43119 386 aa8.93□□□□□ -0.98
USP28-202ENST00000535607 TLR1Q15399 786 aa8.93□□□□□ -0.98
USP28-202ENST00000535607 NBPF15Q8N660 670 aa8.93□□□□□ -0.98
USP28-202ENST00000535607 HPS1Q92902 700 aa8.93□□□□□ -0.98
USP28-202ENST00000535607 ETNK1Q9HBU6 452 aa8.93□□□□□ -0.98
USP28-202ENST00000535607 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.93□□□□□ -0.98
USP28-202ENST00000535607 GLI2P10070 1586 aa8.93□□□□□ -0.98
USP28-202ENST00000535607 TTC37Q6PGP7 1564 aa8.93□□□□□ -0.98
USP28-202ENST00000535607 CDC42BPAQ5VT25 1732 aa8.92□□□□□ -0.98
USP28-202ENST00000535607 CFAP74Q9C0B2 1584 aa8.92□□□□□ -0.98
USP28-202ENST00000535607 FGD6Q6ZV73 1430 aa8.92□□□□□ -0.98
USP28-202ENST00000535607 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.92□□□□□ -0.98
USP28-202ENST00000535607 TRIM67Q6ZTA4 783 aa8.92□□□□□ -0.98
USP28-202ENST00000535607 Q6ZVU0 165 aa8.92□□□□□ -0.98
USP28-202ENST00000535607 CNKSR1Q969H4 720 aa8.92□□□□□ -0.98
USP28-202ENST00000535607 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.92□□□□□ -0.98
USP28-202ENST00000535607 DIP2BQ9P265 1576 aa8.91□□□□□ -0.98
USP28-202ENST00000535607 PHLDB1Q86UU1 1377 aa8.91□□□□□ -0.98
USP28-202ENST00000535607 A0A1W2PRU2 124 aa8.91□□□□□ -0.98
USP28-202ENST00000535607 TMEM229AB2RXF0 380 aa8.91□□□□□ -0.98
USP28-202ENST00000535607 GFRA3O60609 400 aa8.91□□□□□ -0.98
USP28-202ENST00000535607 SCNN1DP51172 638 aa8.91□□□□□ -0.98
USP28-202ENST00000535607 CLN3Q13286 438 aa8.91□□□□□ -0.98
USP28-202ENST00000535607 SCARF1Q14162 830 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms