RNA–Protein interactions for RNA: ENST00000533704.1

CAPN1-225, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 643 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-225ENST00000533704 USPL1Q5W0Q7 1092 aa13.88□□□□□ -0.19
CAPN1-225ENST00000533704 VSIG10Q8N0Z9 540 aa13.88□□□□□ -0.19
CAPN1-225ENST00000533704 ZNF330Q9Y3S2 320 aaPredicted RBP13.88□□□□□ -0.19
CAPN1-225ENST00000533704 AFDNP55196 1824 aaKnown RBP13.87□□□□□ -0.19
CAPN1-225ENST00000533704 CEMIPQ8WUJ3 1361 aa13.87□□□□□ -0.19
CAPN1-225ENST00000533704 HEG1Q9ULI3 1381 aa13.87□□□□□ -0.19
CAPN1-225ENST00000533704 KCNQ3O43525 872 aa13.87□□□□□ -0.19
CAPN1-225ENST00000533704 ZNF784Q8NCA9 323 aaPredicted RBP13.87□□□□□ -0.19
CAPN1-225ENST00000533704 FMNL2Q96PY5 1086 aa13.87□□□□□ -0.19
CAPN1-225ENST00000533704 C10orf71Q711Q0 1435 aa13.86□□□□□ -0.19
CAPN1-225ENST00000533704 PXDNLA1KZ92 1463 aa13.86□□□□□ -0.19
CAPN1-225ENST00000533704 A0A0G2JLW4 131 aa13.85□□□□□ -0.19
CAPN1-225ENST00000533704 DDR1Q08345 913 aa13.85□□□□□ -0.19
CAPN1-225ENST00000533704 RALBP1Q15311 655 aa13.85□□□□□ -0.19
CAPN1-225ENST00000533704 MAPK8IP3Q9UPT6 1336 aa13.85□□□□□ -0.19
CAPN1-225ENST00000533704 BRCA1P38398 1863 aaKnown RBP13.84□□□□□ -0.19
CAPN1-225ENST00000533704 UTRNP46939 3433 aa13.84□□□□□ -0.19
CAPN1-225ENST00000533704 TEX13AQ9BXU3 409 aaPredicted RBP13.84□□□□□ -0.19
CAPN1-225ENST00000533704 NARFQ9UHQ1 456 aa13.84□□□□□ -0.19
CAPN1-225ENST00000533704 A1BGP04217 495 aa13.83□□□□□ -0.2
CAPN1-225ENST00000533704 DPEP1P16444 411 aa13.83□□□□□ -0.2
CAPN1-225ENST00000533704 TGFB2P61812 414 aa13.83□□□□□ -0.2
CAPN1-225ENST00000533704 NPM2Q86SE8 214 aaKnown RBP13.83□□□□□ -0.2
CAPN1-225ENST00000533704 BCS1LQ9Y276 419 aa13.83□□□□□ -0.2
CAPN1-225ENST00000533704 SCN7AQ01118 1682 aa13.82□□□□□ -0.2
CAPN1-225ENST00000533704 A0A087WZG4 1122 aa13.82□□□□□ -0.2
CAPN1-225ENST00000533704 HTATSF1O43719 755 aaKnown RBP13.82□□□□□ -0.2
CAPN1-225ENST00000533704 NFIXQ14938 502 aa13.82□□□□□ -0.2
CAPN1-225ENST00000533704 BICDL1Q6ZP65 573 aa13.82□□□□□ -0.2
CAPN1-225ENST00000533704 PNNQ9H307 717 aaKnown RBP13.82□□□□□ -0.2
CAPN1-225ENST00000533704 MIS18AQ9NYP9 233 aa13.82□□□□□ -0.2
CAPN1-225ENST00000533704 KDM3BQ7LBC6 1761 aa13.81□□□□□ -0.2
CAPN1-225ENST00000533704 GOLGB1Q14789 3259 aaKnown RBP13.81□□□□□ -0.2
CAPN1-225ENST00000533704 PRAMEF22A3QJZ6 481 aa13.81□□□□□ -0.2
CAPN1-225ENST00000533704 POLRMTO00411 1230 aaKnown RBP13.81□□□□□ -0.2
CAPN1-225ENST00000533704 TM4SF1P30408 202 aa13.81□□□□□ -0.2
CAPN1-225ENST00000533704 PIP4K2AP48426 406 aaPredicted RBP13.81□□□□□ -0.2
CAPN1-225ENST00000533704 EIF5P55010 431 aaKnown RBP13.81□□□□□ -0.2
CAPN1-225ENST00000533704 TAF7Q15545 349 aaPredicted RBP13.81□□□□□ -0.2
CAPN1-225ENST00000533704 NFE2L2Q16236 605 aa13.81□□□□□ -0.2
CAPN1-225ENST00000533704 PLEKHF1Q96S99 279 aa13.81□□□□□ -0.2
CAPN1-225ENST00000533704 THUMPD2Q9BTF0 503 aaKnown RBP13.81□□□□□ -0.2
CAPN1-225ENST00000533704 TBC1D2BQ9UPU7 963 aa13.81□□□□□ -0.2
CAPN1-225ENST00000533704 MYBBP1AQ9BQG0 1328 aaKnown RBP13.81□□□□□ -0.2
CAPN1-225ENST00000533704 LAMB4A4D0S4 1761 aa13.81□□□□□ -0.2
CAPN1-225ENST00000533704 ARFGEF1Q9Y6D6 1849 aa13.8□□□□□ -0.2
CAPN1-225ENST00000533704 BCL2L12Q9HB09 334 aa13.8□□□□□ -0.2
CAPN1-225ENST00000533704 USP16Q9Y5T5 823 aa13.8□□□□□ -0.2
CAPN1-225ENST00000533704 BCORQ6W2J9 1755 aa13.79□□□□□ -0.2
CAPN1-225ENST00000533704 SNRPA1P09661 255 aaKnown RBP13.79□□□□□ -0.2
CAPN1-225ENST00000533704 CHRNA5P30532 468 aa13.79□□□□□ -0.2
CAPN1-225ENST00000533704 IL6STP40189 918 aaPredicted RBP13.79□□□□□ -0.2
CAPN1-225ENST00000533704 NRXN2Q9P2S2 1712 aa13.78□□□□□ -0.2
CAPN1-225ENST00000533704 SERPINB2P05120 415 aa13.78□□□□□ -0.2
CAPN1-225ENST00000533704 ARHGAP27Q6ZUM4 889 aa13.78□□□□□ -0.2
CAPN1-225ENST00000533704 ATP10DQ9P241 1426 aa13.78□□□□□ -0.2
CAPN1-225ENST00000533704 CACNA1SQ13698 1873 aa13.77□□□□□ -0.21
CAPN1-225ENST00000533704 WDR43Q15061 677 aaKnown RBP eCLIP13.77□□□□□ -0.21
CAPN1-225ENST00000533704 TBC1D9BQ66K14 1250 aa13.77□□□□□ -0.21
CAPN1-225ENST00000533704 DZIP3Q86Y13 1208 aaKnown RBP13.77□□□□□ -0.21
CAPN1-225ENST00000533704 CCDC146Q8IYE0 955 aa13.77□□□□□ -0.21
CAPN1-225ENST00000533704 ZNF526Q8TF50 670 aaPredicted RBP13.77□□□□□ -0.21
CAPN1-225ENST00000533704 PIM2Q9P1W9 311 aa13.77□□□□□ -0.21
CAPN1-225ENST00000533704 ANKRD31Q8N7Z5 1873 aa13.76□□□□□ -0.21
CAPN1-225ENST00000533704 DLEC1Q9Y238 1755 aa13.76□□□□□ -0.21
CAPN1-225ENST00000533704 NPHP1O15259 732 aa13.76□□□□□ -0.21
CAPN1-225ENST00000533704 RIPK4P57078 832 aa13.76□□□□□ -0.21
CAPN1-225ENST00000533704 DALRD3Q5D0E6 543 aaKnown RBP13.76□□□□□ -0.21
CAPN1-225ENST00000533704 PNISRQ8TF01 805 aaKnown RBP13.76□□□□□ -0.21
CAPN1-225ENST00000533704 RRP7AQ9Y3A4 280 aaKnown RBP13.76□□□□□ -0.21
CAPN1-225ENST00000533704 CARMIL3Q8ND23 1372 aa13.75□□□□□ -0.21
CAPN1-225ENST00000533704 GIGYF1O75420 1035 aaPredicted RBP13.75□□□□□ -0.21
CAPN1-225ENST00000533704 CAMTA2O94983 1202 aa13.75□□□□□ -0.21
CAPN1-225ENST00000533704 KCNA3P22001 575 aa13.75□□□□□ -0.21
CAPN1-225ENST00000533704 ZEB1P37275 1124 aaPredicted RBP13.75□□□□□ -0.21
CAPN1-225ENST00000533704 NEUROD2Q15784 382 aa13.75□□□□□ -0.21
CAPN1-225ENST00000533704 CCDC24Q8N4L8 307 aa13.75□□□□□ -0.21
CAPN1-225ENST00000533704 CCDC88AQ3V6T2 1871 aa13.74□□□□□ -0.21
CAPN1-225ENST00000533704 C2CD5Q86YS7 1000 aa13.74□□□□□ -0.21
CAPN1-225ENST00000533704 NGEFQ8N5V2 710 aa13.74□□□□□ -0.21
CAPN1-225ENST00000533704 SETDB2Q96T68 719 aa13.74□□□□□ -0.21
CAPN1-225ENST00000533704 PRKRIP1Q9H875 184 aaPredicted RBP13.74□□□□□ -0.21
CAPN1-225ENST00000533704 NBPF26B4DH59 902 aa13.73□□□□□ -0.21
CAPN1-225ENST00000533704 TMPOP42166 694 aaKnown RBP13.73□□□□□ -0.21
CAPN1-225ENST00000533704 NBPF10Q6P3W6 841 aaKnown RBP13.73□□□□□ -0.21
CAPN1-225ENST00000533704 NBPF15Q8N660 670 aa13.73□□□□□ -0.21
CAPN1-225ENST00000533704 GPBP1L1Q9HC44 474 aaPredicted RBP13.73□□□□□ -0.21
CAPN1-225ENST00000533704 TSPYL4Q9UJ04 414 aa13.73□□□□□ -0.21
CAPN1-225ENST00000533704 SBF1O95248 1867 aa13.73□□□□□ -0.21
CAPN1-225ENST00000533704 NUP98P52948 1817 aa13.73□□□□□ -0.21
CAPN1-225ENST00000533704 COL11A2P13942 1736 aaPredicted RBP13.73□□□□□ -0.21
CAPN1-225ENST00000533704 H0YIN7 160 aa13.72□□□□□ -0.21
CAPN1-225ENST00000533704 EIF4A1P60842 406 aaKnown RBP13.72□□□□□ -0.21
CAPN1-225ENST00000533704 LMOD3Q0VAK6 560 aa13.72□□□□□ -0.21
CAPN1-225ENST00000533704 ZNF652Q9Y2D9 606 aa13.72□□□□□ -0.21
CAPN1-225ENST00000533704 ADCY9O60503 1353 aa13.71□□□□□ -0.21
CAPN1-225ENST00000533704 PRR5LQ6MZQ0 368 aa13.71□□□□□ -0.21
CAPN1-225ENST00000533704 CNBD1Q8NA66 436 aa13.71□□□□□ -0.21
CAPN1-225ENST00000533704 RUNDC1Q96C34 613 aa13.71□□□□□ -0.21
CAPN1-225ENST00000533704 ADAMTS8Q9UP79 889 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms