RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 CEMIPQ8WUJ3 1361 aa20.55■□□□□ 0.88
CPSF1-211ENST00000533492 COL15A1P39059 1388 aa20.54■□□□□ 0.88
CPSF1-211ENST00000533492 HEG1Q9ULI3 1381 aa20.54■□□□□ 0.88
CPSF1-211ENST00000533492 C10orf71Q711Q0 1435 aa20.53■□□□□ 0.88
CPSF1-211ENST00000533492 DDR1Q08345 913 aa20.53■□□□□ 0.88
CPSF1-211ENST00000533492 MCM10Q7L590 875 aa20.53■□□□□ 0.88
CPSF1-211ENST00000533492 BCS1LQ9Y276 419 aa20.53■□□□□ 0.88
CPSF1-211ENST00000533492 UBR2Q8IWV8 1755 aa20.53■□□□□ 0.88
CPSF1-211ENST00000533492 PXDNLA1KZ92 1463 aa20.52■□□□□ 0.88
CPSF1-211ENST00000533492 A0A087WZG4 1122 aa20.52■□□□□ 0.88
CPSF1-211ENST00000533492 HTATSF1O43719 755 aaKnown RBP20.52■□□□□ 0.88
CPSF1-211ENST00000533492 DPEP1P16444 411 aa20.52■□□□□ 0.88
CPSF1-211ENST00000533492 TM4SF1P30408 202 aa20.52■□□□□ 0.88
CPSF1-211ENST00000533492 NPM2Q86SE8 214 aaKnown RBP20.52■□□□□ 0.88
CPSF1-211ENST00000533492 KIF13BQ9NQT8 1826 aa20.52■□□□□ 0.88
CPSF1-211ENST00000533492 KCNQ3O43525 872 aa20.51■□□□□ 0.87
CPSF1-211ENST00000533492 ZNF330Q9Y3S2 320 aaPredicted RBP20.51■□□□□ 0.87
CPSF1-211ENST00000533492 SIPA1L3O60292 1781 aaPredicted RBP20.51■□□□□ 0.87
CPSF1-211ENST00000533492 N4BP2Q86UW6 1770 aaPredicted RBP20.5■□□□□ 0.87
CPSF1-211ENST00000533492 POLRMTO00411 1230 aaKnown RBP20.5■□□□□ 0.87
CPSF1-211ENST00000533492 EIF5P55010 431 aaKnown RBP20.5■□□□□ 0.87
CPSF1-211ENST00000533492 DDX10Q13206 875 aaKnown RBP20.5■□□□□ 0.87
CPSF1-211ENST00000533492 DCTN1Q14203 1278 aa20.5■□□□□ 0.87
CPSF1-211ENST00000533492 PNNQ9H307 717 aaKnown RBP20.5■□□□□ 0.87
CPSF1-211ENST00000533492 NFIXQ14938 502 aa20.49■□□□□ 0.87
CPSF1-211ENST00000533492 RALBP1Q15311 655 aa20.49■□□□□ 0.87
CPSF1-211ENST00000533492 PIM2Q9P1W9 311 aa20.48■□□□□ 0.87
CPSF1-211ENST00000533492 GIGYF1O75420 1035 aaPredicted RBP20.47■□□□□ 0.87
CPSF1-211ENST00000533492 A1BGP04217 495 aa20.47■□□□□ 0.87
CPSF1-211ENST00000533492 IL6STP40189 918 aaPredicted RBP20.47■□□□□ 0.87
CPSF1-211ENST00000533492 TAF7Q15545 349 aaPredicted RBP20.47■□□□□ 0.87
CPSF1-211ENST00000533492 BCL2L12Q9HB09 334 aa20.47■□□□□ 0.87
CPSF1-211ENST00000533492 SERPINB2P05120 415 aa20.46■□□□□ 0.87
CPSF1-211ENST00000533492 BICDL1Q6ZP65 573 aa20.46■□□□□ 0.87
CPSF1-211ENST00000533492 ARHGAP27Q6ZUM4 889 aa20.46■□□□□ 0.87
CPSF1-211ENST00000533492 TBC1D2BQ9UPU7 963 aa20.46■□□□□ 0.87
CPSF1-211ENST00000533492 MAPK8IP3Q9UPT6 1336 aa20.46■□□□□ 0.87
CPSF1-211ENST00000533492 KIAA1551Q9HCM1 1747 aa20.45■□□□□ 0.86
CPSF1-211ENST00000533492 SNRPA1P09661 255 aaKnown RBP20.45■□□□□ 0.86
CPSF1-211ENST00000533492 KCNA3P22001 575 aa20.45■□□□□ 0.86
CPSF1-211ENST00000533492 USP16Q9Y5T5 823 aa20.45■□□□□ 0.86
CPSF1-211ENST00000533492 ATP10DQ9P241 1426 aa20.44■□□□□ 0.86
CPSF1-211ENST00000533492 CHRNA5P30532 468 aa20.44■□□□□ 0.86
CPSF1-211ENST00000533492 C1QTNF8P60827 252 aa20.44■□□□□ 0.86
CPSF1-211ENST00000533492 DALRD3Q5D0E6 543 aaKnown RBP20.44■□□□□ 0.86
CPSF1-211ENST00000533492 PLEKHF1Q96S99 279 aa20.44■□□□□ 0.86
CPSF1-211ENST00000533492 NFE2L2Q16236 605 aa20.43■□□□□ 0.86
CPSF1-211ENST00000533492 GPBP1L1Q9HC44 474 aaPredicted RBP20.43■□□□□ 0.86
CPSF1-211ENST00000533492 ZNF526Q8TF50 670 aaPredicted RBP20.42■□□□□ 0.86
CPSF1-211ENST00000533492 MIS18AQ9NYP9 233 aa20.42■□□□□ 0.86
CPSF1-211ENST00000533492 PRAMEF22A3QJZ6 481 aa20.41■□□□□ 0.86
CPSF1-211ENST00000533492 TBC1D9BQ66K14 1250 aa20.41■□□□□ 0.86
CPSF1-211ENST00000533492 PNISRQ8TF01 805 aaKnown RBP20.41■□□□□ 0.86
CPSF1-211ENST00000533492 PIP4K2AP48426 406 aaPredicted RBP20.4■□□□□ 0.86
CPSF1-211ENST00000533492 DZIP3Q86Y13 1208 aaKnown RBP20.4■□□□□ 0.86
CPSF1-211ENST00000533492 AFDNP55196 1824 aaKnown RBP20.39■□□□□ 0.86
CPSF1-211ENST00000533492 ADCY9O60503 1353 aa20.39■□□□□ 0.85
CPSF1-211ENST00000533492 DLG5Q8TDM6 1919 aa20.39■□□□□ 0.85
CPSF1-211ENST00000533492 BRCA1P38398 1863 aaKnown RBP20.39■□□□□ 0.85
CPSF1-211ENST00000533492 MYBBP1AQ9BQG0 1328 aaKnown RBP20.38■□□□□ 0.85
CPSF1-211ENST00000533492 NPHP1O15259 732 aa20.38■□□□□ 0.85
CPSF1-211ENST00000533492 CAMTA2O94983 1202 aa20.38■□□□□ 0.85
CPSF1-211ENST00000533492 SETDB2Q96T68 719 aa20.38■□□□□ 0.85
CPSF1-211ENST00000533492 H0YIN7 160 aa20.37■□□□□ 0.85
CPSF1-211ENST00000533492 C2CD5Q86YS7 1000 aa20.37■□□□□ 0.85
CPSF1-211ENST00000533492 THUMPD2Q9BTF0 503 aaKnown RBP20.37■□□□□ 0.85
CPSF1-211ENST00000533492 NRXN2Q9P2S2 1712 aa20.36■□□□□ 0.85
CPSF1-211ENST00000533492 CARMIL3Q8ND23 1372 aa20.35■□□□□ 0.85
CPSF1-211ENST00000533492 ARFGEF1Q9Y6D6 1849 aa20.35■□□□□ 0.85
CPSF1-211ENST00000533492 SENP3-EIF4A1A0A087X0R7 540 aa20.35■□□□□ 0.85
CPSF1-211ENST00000533492 RIPK4P57078 832 aa20.35■□□□□ 0.85
CPSF1-211ENST00000533492 TTLL6Q8N841 843 aa20.35■□□□□ 0.85
CPSF1-211ENST00000533492 ZNF652Q9Y2D9 606 aa20.35■□□□□ 0.85
CPSF1-211ENST00000533492 PDE6BP35913 854 aa20.34■□□□□ 0.85
CPSF1-211ENST00000533492 CLEC4GQ6UXB4 293 aa20.34■□□□□ 0.85
CPSF1-211ENST00000533492 PDZRN3Q9UPQ7 1066 aa20.34■□□□□ 0.85
CPSF1-211ENST00000533492 SCN7AQ01118 1682 aa20.33■□□□□ 0.85
CPSF1-211ENST00000533492 NBPF26B4DH59 902 aa20.33■□□□□ 0.85
CPSF1-211ENST00000533492 EIF4A1P60842 406 aaKnown RBP20.33■□□□□ 0.85
CPSF1-211ENST00000533492 C9orf131Q5VYM1 1079 aa20.33■□□□□ 0.85
CPSF1-211ENST00000533492 PRR5LQ6MZQ0 368 aa20.33■□□□□ 0.85
CPSF1-211ENST00000533492 NBPF10Q6P3W6 841 aaKnown RBP20.33■□□□□ 0.85
CPSF1-211ENST00000533492 CCDC24Q8N4L8 307 aa20.33■□□□□ 0.85
CPSF1-211ENST00000533492 NBPF15Q8N660 670 aa20.33■□□□□ 0.85
CPSF1-211ENST00000533492 CNBD1Q8NA66 436 aa20.33■□□□□ 0.85
CPSF1-211ENST00000533492 BRIP1Q9BX63 1249 aa20.33■□□□□ 0.85
CPSF1-211ENST00000533492 WDR43Q15061 677 aaKnown RBP eCLIP20.32■□□□□ 0.84
CPSF1-211ENST00000533492 ZNF622Q969S3 477 aaKnown RBP eCLIP20.32■□□□□ 0.84
CPSF1-211ENST00000533492 TMPOP42166 694 aaKnown RBP20.31■□□□□ 0.84
CPSF1-211ENST00000533492 ST5P78524 1137 aa20.31■□□□□ 0.84
CPSF1-211ENST00000533492 LMOD3Q0VAK6 560 aa20.31■□□□□ 0.84
CPSF1-211ENST00000533492 NBPF5PQ86XG9 351 aaPredicted RBP20.3■□□□□ 0.84
CPSF1-211ENST00000533492 CCDC146Q8IYE0 955 aa20.3■□□□□ 0.84
CPSF1-211ENST00000533492 NGEFQ8N5V2 710 aa20.3■□□□□ 0.84
CPSF1-211ENST00000533492 RNF181Q9P0P0 153 aa20.3■□□□□ 0.84
CPSF1-211ENST00000533492 TSPYL4Q9UJ04 414 aa20.3■□□□□ 0.84
CPSF1-211ENST00000533492 NEUROD2Q15784 382 aa20.29■□□□□ 0.84
CPSF1-211ENST00000533492 RRP7AQ9Y3A4 280 aaKnown RBP20.29■□□□□ 0.84
CPSF1-211ENST00000533492 NIP7Q9Y221 180 aaKnown RBP eCLIP20.28■□□□□ 0.84
CPSF1-211ENST00000533492 KDM3BQ7LBC6 1761 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms