RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 RNF20Q5VTR2 975 aa13.5□□□□□ -0.25
TRIM3-211ENST00000532542 AACSQ86V21 672 aa13.5□□□□□ -0.25
TRIM3-211ENST00000532542 NUTM1Q86Y26 1132 aa13.49□□□□□ -0.25
TRIM3-211ENST00000532542 C1orf167Q5SNV9 1468 aa13.49□□□□□ -0.25
TRIM3-211ENST00000532542 MCM2P49736 904 aa13.49□□□□□ -0.25
TRIM3-211ENST00000532542 XAGE3Q8WTP9 111 aa13.49□□□□□ -0.25
TRIM3-211ENST00000532542 NEUROD6Q96NK8 337 aa13.49□□□□□ -0.25
TRIM3-211ENST00000532542 L1TD1Q5T7N2 865 aaKnown RBP13.49□□□□□ -0.25
TRIM3-211ENST00000532542 COPS6Q7L5N1 327 aa13.49□□□□□ -0.25
TRIM3-211ENST00000532542 KNDC1Q76NI1 1749 aa13.49□□□□□ -0.25
TRIM3-211ENST00000532542 PIP4K2BP78356 416 aa13.48□□□□□ -0.25
TRIM3-211ENST00000532542 FSD1Q9BTV5 496 aa13.48□□□□□ -0.25
TRIM3-211ENST00000532542 ADGRB2O60241 1585 aa13.48□□□□□ -0.25
TRIM3-211ENST00000532542 GRM8O00222 908 aa13.48□□□□□ -0.25
TRIM3-211ENST00000532542 PLEKHM2Q8IWE5 1019 aa13.48□□□□□ -0.25
TRIM3-211ENST00000532542 NAP1L2Q9ULW6 460 aaPredicted RBP13.48□□□□□ -0.25
TRIM3-211ENST00000532542 PDE1AP54750 535 aa13.48□□□□□ -0.25
TRIM3-211ENST00000532542 NUCB2P80303 420 aa13.47□□□□□ -0.25
TRIM3-211ENST00000532542 RHPN1Q8TCX5 695 aa13.47□□□□□ -0.25
TRIM3-211ENST00000532542 K7ELQ4 463 aaPredicted RBP13.47□□□□□ -0.25
TRIM3-211ENST00000532542 ADAMTS2O95450 1211 aa13.47□□□□□ -0.25
TRIM3-211ENST00000532542 HSP90B1P14625 803 aaKnown RBP13.47□□□□□ -0.25
TRIM3-211ENST00000532542 PHKG2P15735 406 aa13.47□□□□□ -0.25
TRIM3-211ENST00000532542 A0A087WZG4 1122 aa13.47□□□□□ -0.25
TRIM3-211ENST00000532542 GIGYF1O75420 1035 aaPredicted RBP13.47□□□□□ -0.25
TRIM3-211ENST00000532542 NEK4P51957 841 aa13.46□□□□□ -0.25
TRIM3-211ENST00000532542 SHPRHQ149N8 1683 aa13.46□□□□□ -0.25
TRIM3-211ENST00000532542 SDSP20132 328 aa13.46□□□□□ -0.25
TRIM3-211ENST00000532542 SPATA31A3Q5VYP0 1347 aa13.46□□□□□ -0.25
TRIM3-211ENST00000532542 NRXN3Q9Y4C0 1643 aa13.46□□□□□ -0.25
TRIM3-211ENST00000532542 SEC24BO95487 1268 aa13.46□□□□□ -0.25
TRIM3-211ENST00000532542 TBC1D2Q9BYX2 928 aa13.46□□□□□ -0.25
TRIM3-211ENST00000532542 ANKRD26Q9UPS8 1709 aa13.46□□□□□ -0.26
TRIM3-211ENST00000532542 MEX3CQ5U5Q3 659 aaKnown RBP13.46□□□□□ -0.26
TRIM3-211ENST00000532542 C16orf71Q8IYS4 520 aaPredicted RBP13.46□□□□□ -0.26
TRIM3-211ENST00000532542 CCDC57Q2TAC2 916 aa13.45□□□□□ -0.26
TRIM3-211ENST00000532542 KCNQ3O43525 872 aa13.45□□□□□ -0.26
TRIM3-211ENST00000532542 BRINP3Q76B58 766 aa13.45□□□□□ -0.26
TRIM3-211ENST00000532542 NCAPD2Q15021 1401 aa13.45□□□□□ -0.26
TRIM3-211ENST00000532542 MAP4K4O95819 1239 aaPredicted RBP13.44□□□□□ -0.26
TRIM3-211ENST00000532542 GSE1Q14687 1217 aa13.44□□□□□ -0.26
TRIM3-211ENST00000532542 CRB1P82279 1406 aa13.44□□□□□ -0.26
TRIM3-211ENST00000532542 TOM1O60784 492 aa13.44□□□□□ -0.26
TRIM3-211ENST00000532542 SKOR2Q2VWA4 1001 aaPredicted RBP13.44□□□□□ -0.26
TRIM3-211ENST00000532542 GZF1Q9H116 711 aaPredicted RBP13.44□□□□□ -0.26
TRIM3-211ENST00000532542 ECHDC1Q9NTX5 307 aa13.44□□□□□ -0.26
TRIM3-211ENST00000532542 SSH2Q76I76 1423 aa13.44□□□□□ -0.26
TRIM3-211ENST00000532542 ZNF335Q9H4Z2 1342 aaPredicted RBP13.44□□□□□ -0.26
TRIM3-211ENST00000532542 UBE3BQ7Z3V4 1068 aa13.44□□□□□ -0.26
TRIM3-211ENST00000532542 CWC25Q9NXE8 425 aaPredicted RBP13.44□□□□□ -0.26
TRIM3-211ENST00000532542 BTG4Q9NY30 223 aa13.44□□□□□ -0.26
TRIM3-211ENST00000532542 CIZ1Q9ULV3 898 aaPredicted RBP13.44□□□□□ -0.26
TRIM3-211ENST00000532542 CWF19L2Q2TBE0 894 aaKnown RBP13.43□□□□□ -0.26
TRIM3-211ENST00000532542 AXIN2Q9Y2T1 843 aa13.43□□□□□ -0.26
TRIM3-211ENST00000532542 HSP90AB3PQ58FF7 597 aa13.43□□□□□ -0.26
TRIM3-211ENST00000532542 LMTK3Q96Q04 1460 aa13.43□□□□□ -0.26
TRIM3-211ENST00000532542 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.43□□□□□ -0.26
TRIM3-211ENST00000532542 ATP5J2-PTCD1G3V325 749 aa13.43□□□□□ -0.26
TRIM3-211ENST00000532542 ZNF496Q96IT1 587 aaPredicted RBP13.43□□□□□ -0.26
TRIM3-211ENST00000532542 USP44Q9H0E7 712 aa13.43□□□□□ -0.26
TRIM3-211ENST00000532542 ZBTB3Q9H5J0 574 aa13.43□□□□□ -0.26
TRIM3-211ENST00000532542 TNS3Q68CZ2 1445 aa13.43□□□□□ -0.26
TRIM3-211ENST00000532542 CEP126Q9P2H0 1117 aa13.42□□□□□ -0.26
TRIM3-211ENST00000532542 FRAT2O75474 233 aaPredicted RBP13.42□□□□□ -0.26
TRIM3-211ENST00000532542 DNAJC2Q99543 621 aaKnown RBP13.42□□□□□ -0.26
TRIM3-211ENST00000532542 NCOA3Q9Y6Q9 1424 aa13.42□□□□□ -0.26
TRIM3-211ENST00000532542 PSMA5P28066 241 aa13.42□□□□□ -0.26
TRIM3-211ENST00000532542 ERVV-2B6SEH9 535 aa13.42□□□□□ -0.26
TRIM3-211ENST00000532542 GOLGA6L4A6NEF3 574 aa13.41□□□□□ -0.26
TRIM3-211ENST00000532542 CWC27Q6UX04 472 aaKnown RBP13.41□□□□□ -0.26
TRIM3-211ENST00000532542 CHMP4CQ96CF2 233 aa13.41□□□□□ -0.26
TRIM3-211ENST00000532542 CWC22Q9HCG8 908 aaKnown RBP13.41□□□□□ -0.26
TRIM3-211ENST00000532542 WDR17Q8IZU2 1322 aa13.41□□□□□ -0.26
TRIM3-211ENST00000532542 TRIM44Q96DX7 344 aaPredicted RBP13.41□□□□□ -0.26
TRIM3-211ENST00000532542 CCDC158Q5M9N0 1113 aa13.41□□□□□ -0.26
TRIM3-211ENST00000532542 TSHZ3Q63HK5 1081 aa13.41□□□□□ -0.26
TRIM3-211ENST00000532542 ATP6V1DQ9Y5K8 247 aa13.4□□□□□ -0.26
TRIM3-211ENST00000532542 PNMA6EA0A0J9YXQ4 647 aa13.4□□□□□ -0.26
TRIM3-211ENST00000532542 METTL22Q9BUU2 404 aaPredicted RBP13.4□□□□□ -0.26
TRIM3-211ENST00000532542 CARD10Q9BWT7 1032 aa13.4□□□□□ -0.26
TRIM3-211ENST00000532542 NBPF7P0C2Y1 421 aaPredicted RBP13.4□□□□□ -0.26
TRIM3-211ENST00000532542 KIF3AQ9Y496 699 aa13.4□□□□□ -0.26
TRIM3-211ENST00000532542 GOLGA6L3A6NEY3 463 aa13.39□□□□□ -0.27
TRIM3-211ENST00000532542 CSPP1Q1MSJ5 1256 aa13.39□□□□□ -0.27
TRIM3-211ENST00000532542 BEND3Q5T5X7 828 aa13.39□□□□□ -0.27
TRIM3-211ENST00000532542 SIRT2Q8IXJ6 389 aa13.39□□□□□ -0.27
TRIM3-211ENST00000532542 SYAP1Q96A49 352 aaPredicted RBP13.39□□□□□ -0.27
TRIM3-211ENST00000532542 CCDC8Q9H0W5 538 aaPredicted RBP13.39□□□□□ -0.27
TRIM3-211ENST00000532542 CNNM1Q9NRU3 951 aa13.39□□□□□ -0.27
TRIM3-211ENST00000532542 DCCP43146 1447 aa13.39□□□□□ -0.27
TRIM3-211ENST00000532542 PIP4K2AP48426 406 aaPredicted RBP13.39□□□□□ -0.27
TRIM3-211ENST00000532542 TPRNQ4KMQ1 711 aa13.39□□□□□ -0.27
TRIM3-211ENST00000532542 EVI5LQ96CN4 794 aa13.39□□□□□ -0.27
TRIM3-211ENST00000532542 MON2Q7Z3U7 1717 aa13.39□□□□□ -0.27
TRIM3-211ENST00000532542 SSH3Q8TE77 659 aa13.39□□□□□ -0.27
TRIM3-211ENST00000532542 CDCA7Q9BWT1 371 aaPredicted RBP13.39□□□□□ -0.27
TRIM3-211ENST00000532542 TTC41PQ6P2S7 1318 aa13.39□□□□□ -0.27
TRIM3-211ENST00000532542 PLBD2Q8NHP8 589 aa13.38□□□□□ -0.27
TRIM3-211ENST00000532542 OTUD7AQ8TE49 926 aaPredicted RBP13.38□□□□□ -0.27
TRIM3-211ENST00000532542 DDX49Q9Y6V7 483 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms