RNA–Protein interactions for RNA: ENST00000531290.5

TRAPPC4-210, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 1,135 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-210ENST00000531290 TEX13AQ9BXU3 409 aaPredicted RBP29.77■■■□□ 2.36
TRAPPC4-210ENST00000531290 GPBP1L1Q9HC44 474 aaPredicted RBP29.77■■■□□ 2.36
TRAPPC4-210ENST00000531290 TJP1Q07157 1748 aa29.76■■■□□ 2.35
TRAPPC4-210ENST00000531290 POLRMTO00411 1230 aaKnown RBP29.75■■■□□ 2.35
TRAPPC4-210ENST00000531290 COL15A1P39059 1388 aa29.75■■■□□ 2.35
TRAPPC4-210ENST00000531290 SENP3-EIF4A1A0A087X0R7 540 aa29.74■■■□□ 2.35
TRAPPC4-210ENST00000531290 ARHGAP27Q6ZUM4 889 aa29.74■■■□□ 2.35
TRAPPC4-210ENST00000531290 ZNF526Q8TF50 670 aaPredicted RBP29.74■■■□□ 2.35
TRAPPC4-210ENST00000531290 RTF1Q92541 710 aaKnown RBP29.74■■■□□ 2.35
TRAPPC4-210ENST00000531290 PIM2Q9P1W9 311 aa29.74■■■□□ 2.35
TRAPPC4-210ENST00000531290 C4AP0C0L4 1744 aa29.74■■■□□ 2.35
TRAPPC4-210ENST00000531290 BTBD11A6QL63 1104 aa29.73■■■□□ 2.35
TRAPPC4-210ENST00000531290 FMNL2Q96PY5 1086 aa29.73■■■□□ 2.35
TRAPPC4-210ENST00000531290 A0A087WZG4 1122 aa29.72■■■□□ 2.35
TRAPPC4-210ENST00000531290 KCNA3P22001 575 aa29.72■■■□□ 2.35
TRAPPC4-210ENST00000531290 HEG1Q9ULI3 1381 aa29.72■■■□□ 2.35
TRAPPC4-210ENST00000531290 ADAMTS7Q9UKP4 1686 aa29.72■■■□□ 2.35
TRAPPC4-210ENST00000531290 NFIXQ14938 502 aa29.71■■■□□ 2.35
TRAPPC4-210ENST00000531290 ADCY9O60503 1353 aa29.71■■■□□ 2.35
TRAPPC4-210ENST00000531290 CEMIPQ8WUJ3 1361 aa29.71■■■□□ 2.35
TRAPPC4-210ENST00000531290 EIF5P55010 431 aaKnown RBP29.7■■■□□ 2.35
TRAPPC4-210ENST00000531290 DALRD3Q5D0E6 543 aaKnown RBP29.7■■■□□ 2.35
TRAPPC4-210ENST00000531290 NPM2Q86SE8 214 aaKnown RBP29.69■■■□□ 2.34
TRAPPC4-210ENST00000531290 BCL2L12Q9HB09 334 aa29.68■■■□□ 2.34
TRAPPC4-210ENST00000531290 CHRNA5P30532 468 aa29.67■■■□□ 2.34
TRAPPC4-210ENST00000531290 ZNF330Q9Y3S2 320 aaPredicted RBP29.67■■■□□ 2.34
TRAPPC4-210ENST00000531290 KCNQ3O43525 872 aa29.66■■■□□ 2.34
TRAPPC4-210ENST00000531290 SERPINB2P05120 415 aa29.66■■■□□ 2.34
TRAPPC4-210ENST00000531290 MCM10Q7L590 875 aa29.66■■■□□ 2.34
TRAPPC4-210ENST00000531290 NEFMP07197 916 aa29.65■■■□□ 2.34
TRAPPC4-210ENST00000531290 HTATSF1O43719 755 aaKnown RBP29.64■■■□□ 2.34
TRAPPC4-210ENST00000531290 IL6STP40189 918 aaPredicted RBP29.64■■■□□ 2.34
TRAPPC4-210ENST00000531290 BICDL1Q6ZP65 573 aa29.64■■■□□ 2.34
TRAPPC4-210ENST00000531290 KIF13BQ9NQT8 1826 aa29.64■■■□□ 2.33
TRAPPC4-210ENST00000531290 A1BGP04217 495 aa29.63■■■□□ 2.33
TRAPPC4-210ENST00000531290 TBC1D2BQ9UPU7 963 aa29.62■■■□□ 2.33
TRAPPC4-210ENST00000531290 DCTN1Q14203 1278 aa29.61■■■□□ 2.33
TRAPPC4-210ENST00000531290 N4BP2Q86UW6 1770 aaPredicted RBP29.59■■■□□ 2.33
TRAPPC4-210ENST00000531290 KIAA1551Q9HCM1 1747 aa29.59■■■□□ 2.33
TRAPPC4-210ENST00000531290 SNRPA1P09661 255 aaKnown RBP29.58■■■□□ 2.33
TRAPPC4-210ENST00000531290 USP16Q9Y5T5 823 aa29.58■■■□□ 2.33
TRAPPC4-210ENST00000531290 TAF7Q15545 349 aaPredicted RBP29.57■■■□□ 2.32
TRAPPC4-210ENST00000531290 C9orf131Q5VYM1 1079 aa29.57■■■□□ 2.32
TRAPPC4-210ENST00000531290 TBC1D9BQ66K14 1250 aa29.57■■■□□ 2.32
TRAPPC4-210ENST00000531290 UBR2Q8IWV8 1755 aa29.56■■■□□ 2.32
TRAPPC4-210ENST00000531290 H0YIN7 160 aa29.55■■■□□ 2.32
TRAPPC4-210ENST00000531290 C2CD5Q86YS7 1000 aa29.55■■■□□ 2.32
TRAPPC4-210ENST00000531290 PNNQ9H307 717 aaKnown RBP29.55■■■□□ 2.32
TRAPPC4-210ENST00000531290 DZIP3Q86Y13 1208 aaKnown RBP29.53■■■□□ 2.32
TRAPPC4-210ENST00000531290 SETDB2Q96T68 719 aa29.53■■■□□ 2.32
TRAPPC4-210ENST00000531290 PRAMEF22A3QJZ6 481 aa29.52■■■□□ 2.32
TRAPPC4-210ENST00000531290 CAMTA2O94983 1202 aa29.52■■■□□ 2.32
TRAPPC4-210ENST00000531290 TTLL6Q8N841 843 aa29.52■■■□□ 2.32
TRAPPC4-210ENST00000531290 KIF3CO14782 793 aa29.51■■■□□ 2.31
TRAPPC4-210ENST00000531290 NPHP1O15259 732 aa29.51■■■□□ 2.31
TRAPPC4-210ENST00000531290 PIP4K2AP48426 406 aaPredicted RBP29.51■■■□□ 2.31
TRAPPC4-210ENST00000531290 VIRMAQ69YN4 1812 aaKnown RBP29.5■■■□□ 2.31
TRAPPC4-210ENST00000531290 BRIP1Q9BX63 1249 aa29.5■■■□□ 2.31
TRAPPC4-210ENST00000531290 MIS18AQ9NYP9 233 aa29.5■■■□□ 2.31
TRAPPC4-210ENST00000531290 RNF181Q9P0P0 153 aa29.5■■■□□ 2.31
TRAPPC4-210ENST00000531290 CARMIL3Q8ND23 1372 aa29.5■■■□□ 2.31
TRAPPC4-210ENST00000531290 PDE6BP35913 854 aa29.49■■■□□ 2.31
TRAPPC4-210ENST00000531290 PNISRQ8TF01 805 aaKnown RBP29.49■■■□□ 2.31
TRAPPC4-210ENST00000531290 PLEKHF1Q96S99 279 aa29.49■■■□□ 2.31
TRAPPC4-210ENST00000531290 PDZRN3Q9UPQ7 1066 aa29.49■■■□□ 2.31
TRAPPC4-210ENST00000531290 RALBP1Q15311 655 aa29.48■■■□□ 2.31
TRAPPC4-210ENST00000531290 NFE2L2Q16236 605 aa29.48■■■□□ 2.31
TRAPPC4-210ENST00000531290 MAPK8IP3Q9UPT6 1336 aa29.47■■■□□ 2.31
TRAPPC4-210ENST00000531290 SIPA1L3O60292 1781 aaPredicted RBP29.47■■■□□ 2.31
TRAPPC4-210ENST00000531290 PRR5LQ6MZQ0 368 aa29.47■■■□□ 2.31
TRAPPC4-210ENST00000531290 CCDC24Q8N4L8 307 aa29.46■■■□□ 2.31
TRAPPC4-210ENST00000531290 CNBD1Q8NA66 436 aa29.46■■■□□ 2.31
TRAPPC4-210ENST00000531290 ZNF622Q969S3 477 aaKnown RBP eCLIP29.46■■■□□ 2.31
TRAPPC4-210ENST00000531290 ZNF652Q9Y2D9 606 aa29.46■■■□□ 2.31
TRAPPC4-210ENST00000531290 CLEC4GQ6UXB4 293 aa29.45■■■□□ 2.31
TRAPPC4-210ENST00000531290 HSPA6P17066 643 aa29.44■■■□□ 2.3
TRAPPC4-210ENST00000531290 ST5P78524 1137 aa29.44■■■□□ 2.3
TRAPPC4-210ENST00000531290 NMRK2Q9NPI5 230 aa29.44■■■□□ 2.3
TRAPPC4-210ENST00000531290 DDX10Q13206 875 aaKnown RBP29.43■■■□□ 2.3
TRAPPC4-210ENST00000531290 KDM2BQ8NHM5 1336 aa29.43■■■□□ 2.3
TRAPPC4-210ENST00000531290 NBPF26B4DH59 902 aa29.42■■■□□ 2.3
TRAPPC4-210ENST00000531290 TOMM70O94826 608 aa29.42■■■□□ 2.3
TRAPPC4-210ENST00000531290 NBPF10Q6P3W6 841 aaKnown RBP29.42■■■□□ 2.3
TRAPPC4-210ENST00000531290 NBPF15Q8N660 670 aa29.42■■■□□ 2.3
TRAPPC4-210ENST00000531290 LMNB1P20700 586 aa29.41■■■□□ 2.3
TRAPPC4-210ENST00000531290 BRCA1P38398 1863 aaKnown RBP29.41■■■□□ 2.3
TRAPPC4-210ENST00000531290 RASSF7Q02833 373 aa29.41■■■□□ 2.3
TRAPPC4-210ENST00000531290 NRXN2Q9P2S2 1712 aa29.4■■■□□ 2.3
TRAPPC4-210ENST00000531290 NBPF5PQ86XG9 351 aaPredicted RBP29.4■■■□□ 2.3
TRAPPC4-210ENST00000531290 THUMPD2Q9BTF0 503 aaKnown RBP29.4■■■□□ 2.3
TRAPPC4-210ENST00000531290 C16orf71Q8IYS4 520 aaPredicted RBP29.39■■■□□ 2.3
TRAPPC4-210ENST00000531290 ARFGEF1Q9Y6D6 1849 aa29.37■■■□□ 2.29
TRAPPC4-210ENST00000531290 RGL2O15211 777 aa29.37■■■□□ 2.29
TRAPPC4-210ENST00000531290 EIF4A1P60842 406 aaKnown RBP29.37■■■□□ 2.29
TRAPPC4-210ENST00000531290 ZNF219Q9P2Y4 722 aaPredicted RBP29.37■■■□□ 2.29
TRAPPC4-210ENST00000531290 NIP7Q9Y221 180 aaKnown RBP eCLIP29.37■■■□□ 2.29
TRAPPC4-210ENST00000531290 AFDNP55196 1824 aaKnown RBP29.36■■■□□ 2.29
TRAPPC4-210ENST00000531290 TPTE2Q6XPS3 522 aa29.36■■■□□ 2.29
TRAPPC4-210ENST00000531290 CNKSR1Q969H4 720 aa29.36■■■□□ 2.29
TRAPPC4-210ENST00000531290 C21orf2O43822 256 aa29.35■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms