RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, humanhuman

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD7-208ENST00000528280 PARP3Q9Y6F1 533 aa12.74□□□□□ -0.37
CHD7-208ENST00000528280 PCNTO95613 3336 aa12.73□□□□□ -0.37
CHD7-208ENST00000528280 MMP10P09238 476 aa12.73□□□□□ -0.37
CHD7-208ENST00000528280 SMIM5Q71RC9 77 aa12.73□□□□□ -0.37
CHD7-208ENST00000528280 NPM2Q86SE8 214 aaKnown RBP12.73□□□□□ -0.37
CHD7-208ENST00000528280 KLRG1Q96E93 195 aa12.73□□□□□ -0.37
CHD7-208ENST00000528280 FMNL2Q96PY5 1086 aa12.73□□□□□ -0.37
CHD7-208ENST00000528280 MRC1P22897 1456 aa12.72□□□□□ -0.37
CHD7-208ENST00000528280 CEMIPQ8WUJ3 1361 aa12.72□□□□□ -0.37
CHD7-208ENST00000528280 A0A087WZG4 1122 aa12.72□□□□□ -0.37
CHD7-208ENST00000528280 GYS1P13807 737 aa12.72□□□□□ -0.37
CHD7-208ENST00000528280 TGFB2P61812 414 aa12.72□□□□□ -0.37
CHD7-208ENST00000528280 TAF7Q15545 349 aaPredicted RBP12.71□□□□□ -0.37
CHD7-208ENST00000528280 PNISRQ8TF01 805 aaKnown RBP12.71□□□□□ -0.37
CHD7-208ENST00000528280 ADAMTS7Q9UKP4 1686 aa12.7□□□□□ -0.38
CHD7-208ENST00000528280 ZNF496Q96IT1 587 aaPredicted RBP12.7□□□□□ -0.38
CHD7-208ENST00000528280 NARFQ9UHQ1 456 aa12.7□□□□□ -0.38
CHD7-208ENST00000528280 HEG1Q9ULI3 1381 aa12.69□□□□□ -0.38
CHD7-208ENST00000528280 SOS1Q07889 1333 aaPredicted RBP12.69□□□□□ -0.38
CHD7-208ENST00000528280 MYBBP1AQ9BQG0 1328 aaKnown RBP12.69□□□□□ -0.38
CHD7-208ENST00000528280 USP42Q9H9J4 1324 aaKnown RBP12.69□□□□□ -0.38
CHD7-208ENST00000528280 MAPK8IP3Q9UPT6 1336 aa12.69□□□□□ -0.38
CHD7-208ENST00000528280 COL5A3P25940 1745 aaPredicted RBP12.68□□□□□ -0.38
CHD7-208ENST00000528280 SNRPA1P09661 255 aaKnown RBP12.68□□□□□ -0.38
CHD7-208ENST00000528280 CANXP27824 592 aaKnown RBP12.68□□□□□ -0.38
CHD7-208ENST00000528280 TM4SF1P30408 202 aa12.68□□□□□ -0.38
CHD7-208ENST00000528280 IL6STP40189 918 aaPredicted RBP12.68□□□□□ -0.38
CHD7-208ENST00000528280 NFE2L2Q16236 605 aa12.68□□□□□ -0.38
CHD7-208ENST00000528280 MCM10Q7L590 875 aa12.68□□□□□ -0.38
CHD7-208ENST00000528280 PLEKHF1Q96S99 279 aa12.68□□□□□ -0.38
CHD7-208ENST00000528280 MYH14Q7Z406 1995 aaKnown RBP12.67□□□□□ -0.38
CHD7-208ENST00000528280 CICQ96RK0 1608 aaPredicted RBP12.67□□□□□ -0.38
CHD7-208ENST00000528280 EIF5P55010 431 aaKnown RBP12.67□□□□□ -0.38
CHD7-208ENST00000528280 HTRA3P83110 453 aa12.67□□□□□ -0.38
CHD7-208ENST00000528280 FKBP8Q14318 412 aa12.67□□□□□ -0.38
CHD7-208ENST00000528280 USPL1Q5W0Q7 1092 aa12.67□□□□□ -0.38
CHD7-208ENST00000528280 PCDH10Q9P2E7 1040 aa12.67□□□□□ -0.38
CHD7-208ENST00000528280 LMOD3Q0VAK6 560 aa12.66□□□□□ -0.38
CHD7-208ENST00000528280 RBM46Q8TBY0 533 aaKnown RBP12.66□□□□□ -0.38
CHD7-208ENST00000528280 SRP68Q9UHB9 627 aaKnown RBP12.66□□□□□ -0.38
CHD7-208ENST00000528280 WWC3Q9ULE0 1092 aa12.66□□□□□ -0.38
CHD7-208ENST00000528280 ZBTB1Q9Y2K1 713 aa12.66□□□□□ -0.38
CHD7-208ENST00000528280 VIRMAQ69YN4 1812 aaKnown RBP12.66□□□□□ -0.38
CHD7-208ENST00000528280 KCPQ6ZWJ8 1503 aa12.66□□□□□ -0.38
CHD7-208ENST00000528280 WDR43Q15061 677 aaKnown RBP eCLIP12.65□□□□□ -0.38
CHD7-208ENST00000528280 BABAM1Q9NWV8 329 aa12.65□□□□□ -0.38
CHD7-208ENST00000528280 COL15A1P39059 1388 aa12.65□□□□□ -0.38
CHD7-208ENST00000528280 DCTN1Q14203 1278 aa12.64□□□□□ -0.39
CHD7-208ENST00000528280 PDZRN3Q9UPQ7 1066 aa12.64□□□□□ -0.39
CHD7-208ENST00000528280 TJP1Q07157 1748 aa12.64□□□□□ -0.39
CHD7-208ENST00000528280 A0A0G2JLW4 131 aa12.63□□□□□ -0.39
CHD7-208ENST00000528280 POLRMTO00411 1230 aaKnown RBP12.63□□□□□ -0.39
CHD7-208ENST00000528280 RGL2O15211 777 aa12.63□□□□□ -0.39
CHD7-208ENST00000528280 KCNQ3O43525 872 aa12.63□□□□□ -0.39
CHD7-208ENST00000528280 A1BGP04217 495 aa12.63□□□□□ -0.39
CHD7-208ENST00000528280 RIPK4P57078 832 aa12.63□□□□□ -0.39
CHD7-208ENST00000528280 PRKRIP1Q9H875 184 aaPredicted RBP12.63□□□□□ -0.39
CHD7-208ENST00000528280 NMRK2Q9NPI5 230 aa12.63□□□□□ -0.39
CHD7-208ENST00000528280 PIM2Q9P1W9 311 aa12.63□□□□□ -0.39
CHD7-208ENST00000528280 USP16Q9Y5T5 823 aa12.63□□□□□ -0.39
CHD7-208ENST00000528280 UBR2Q8IWV8 1755 aa12.62□□□□□ -0.39
CHD7-208ENST00000528280 SERPINB2P05120 415 aa12.62□□□□□ -0.39
CHD7-208ENST00000528280 FSTL1Q12841 308 aa12.62□□□□□ -0.39
CHD7-208ENST00000528280 NFIXQ14938 502 aa12.62□□□□□ -0.39
CHD7-208ENST00000528280 CLEC4GQ6UXB4 293 aa12.62□□□□□ -0.39
CHD7-208ENST00000528280 ZNF330Q9Y3S2 320 aaPredicted RBP12.62□□□□□ -0.39
CHD7-208ENST00000528280 SIPA1L3O60292 1781 aaPredicted RBP12.61□□□□□ -0.39
CHD7-208ENST00000528280 DPEP1P16444 411 aa12.61□□□□□ -0.39
CHD7-208ENST00000528280 TMPOP42166 694 aaKnown RBP12.61□□□□□ -0.39
CHD7-208ENST00000528280 DDR1Q08345 913 aa12.61□□□□□ -0.39
CHD7-208ENST00000528280 RUNDC1Q96C34 613 aa12.61□□□□□ -0.39
CHD7-208ENST00000528280 SETDB2Q96T68 719 aa12.61□□□□□ -0.39
CHD7-208ENST00000528280 TBC1D2BQ9UPU7 963 aa12.61□□□□□ -0.39
CHD7-208ENST00000528280 ZNF652Q9Y2D9 606 aa12.61□□□□□ -0.39
CHD7-208ENST00000528280 KIF13BQ9NQT8 1826 aa12.6□□□□□ -0.39
CHD7-208ENST00000528280 C4AP0C0L4 1744 aa12.6□□□□□ -0.39
CHD7-208ENST00000528280 DALRD3Q5D0E6 543 aaKnown RBP12.6□□□□□ -0.39
CHD7-208ENST00000528280 DZIP3Q86Y13 1208 aaKnown RBP12.6□□□□□ -0.39
CHD7-208ENST00000528280 BCL2L12Q9HB09 334 aa12.6□□□□□ -0.39
CHD7-208ENST00000528280 MIS18AQ9NYP9 233 aa12.6□□□□□ -0.39
CHD7-208ENST00000528280 BCS1LQ9Y276 419 aa12.6□□□□□ -0.39
CHD7-208ENST00000528280 N4BP2Q86UW6 1770 aaPredicted RBP12.6□□□□□ -0.39
CHD7-208ENST00000528280 C10orf71Q711Q0 1435 aa12.6□□□□□ -0.39
CHD7-208ENST00000528280 EIF4A1P60842 406 aaKnown RBP12.59□□□□□ -0.39
CHD7-208ENST00000528280 KIAA1551Q9HCM1 1747 aa12.59□□□□□ -0.39
CHD7-208ENST00000528280 ZNF316A6NFI3 1004 aaPredicted RBP12.58□□□□□ -0.4
CHD7-208ENST00000528280 H0YIN7 160 aa12.58□□□□□ -0.4
CHD7-208ENST00000528280 NPHP1O15259 732 aa12.58□□□□□ -0.4
CHD7-208ENST00000528280 HSPA1AP0DMV8 641 aaKnown RBP12.58□□□□□ -0.4
CHD7-208ENST00000528280 HSPA1BP0DMV9 641 aaKnown RBP12.58□□□□□ -0.4
CHD7-208ENST00000528280 KCNA3P22001 575 aa12.58□□□□□ -0.4
CHD7-208ENST00000528280 PDE6BP35913 854 aa12.58□□□□□ -0.4
CHD7-208ENST00000528280 BICDL1Q6ZP65 573 aa12.58□□□□□ -0.4
CHD7-208ENST00000528280 ARHGAP27Q6ZUM4 889 aa12.58□□□□□ -0.4
CHD7-208ENST00000528280 C16orf71Q8IYS4 520 aaPredicted RBP12.58□□□□□ -0.4
CHD7-208ENST00000528280 BRIP1Q9BX63 1249 aa12.58□□□□□ -0.4
CHD7-208ENST00000528280 TSPYL4Q9UJ04 414 aa12.58□□□□□ -0.4
CHD7-208ENST00000528280 ADAMTS8Q9UP79 889 aa12.58□□□□□ -0.4
CHD7-208ENST00000528280 PXDNLA1KZ92 1463 aa12.58□□□□□ -0.4
CHD7-208ENST00000528280 CAMTA2O94983 1202 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms