RNA–Protein interactions for RNA: ENST00000527413.1

SSSCA1-204, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 2

Gene SSSCA1, Length 532 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-204ENST00000527413 ARFGEF1Q9Y6D6 1849 aa18.16■□□□□ 0.5
SSSCA1-204ENST00000527413 ZNF496Q96IT1 587 aaPredicted RBP18.16■□□□□ 0.5
SSSCA1-204ENST00000527413 WWC3Q9ULE0 1092 aa18.16■□□□□ 0.5
SSSCA1-204ENST00000527413 FKBP8Q14318 412 aa18.15■□□□□ 0.5
SSSCA1-204ENST00000527413 ZPR1O75312 459 aa18.14■□□□□ 0.49
SSSCA1-204ENST00000527413 TGFB2P61812 414 aa18.14■□□□□ 0.49
SSSCA1-204ENST00000527413 DDR1Q08345 913 aa18.14■□□□□ 0.49
SSSCA1-204ENST00000527413 LAMB4A4D0S4 1761 aa18.14■□□□□ 0.49
SSSCA1-204ENST00000527413 BCORQ6W2J9 1755 aa18.14■□□□□ 0.49
SSSCA1-204ENST00000527413 USPL1Q5W0Q7 1092 aa18.13■□□□□ 0.49
SSSCA1-204ENST00000527413 RTF1Q92541 710 aaKnown RBP18.13■□□□□ 0.49
SSSCA1-204ENST00000527413 NARFQ9UHQ1 456 aa18.13■□□□□ 0.49
SSSCA1-204ENST00000527413 KDM3BQ7LBC6 1761 aa18.12■□□□□ 0.49
SSSCA1-204ENST00000527413 DLEC1Q9Y238 1755 aa18.12■□□□□ 0.49
SSSCA1-204ENST00000527413 BTBD11A6QL63 1104 aa18.12■□□□□ 0.49
SSSCA1-204ENST00000527413 STARD3NLO95772 234 aa18.12■□□□□ 0.49
SSSCA1-204ENST00000527413 CANXP27824 592 aaKnown RBP18.12■□□□□ 0.49
SSSCA1-204ENST00000527413 FMNL2Q96PY5 1086 aa18.12■□□□□ 0.49
SSSCA1-204ENST00000527413 POLRMTO00411 1230 aaKnown RBP18.11■□□□□ 0.49
SSSCA1-204ENST00000527413 MCM10Q7L590 875 aa18.11■□□□□ 0.49
SSSCA1-204ENST00000527413 TEX13AQ9BXU3 409 aaPredicted RBP18.11■□□□□ 0.49
SSSCA1-204ENST00000527413 ADCY9O60503 1353 aa18.1■□□□□ 0.49
SSSCA1-204ENST00000527413 A0A0G2JLW4 131 aa18.1■□□□□ 0.49
SSSCA1-204ENST00000527413 KCNQ3O43525 872 aa18.1■□□□□ 0.49
SSSCA1-204ENST00000527413 HTATSF1O43719 755 aaKnown RBP18.09■□□□□ 0.49
SSSCA1-204ENST00000527413 NEFMP07197 916 aa18.09■□□□□ 0.49
SSSCA1-204ENST00000527413 DPEP1P16444 411 aa18.09■□□□□ 0.49
SSSCA1-204ENST00000527413 TM4SF1P30408 202 aa18.09■□□□□ 0.49
SSSCA1-204ENST00000527413 EIF5P55010 431 aaKnown RBP18.09■□□□□ 0.49
SSSCA1-204ENST00000527413 DCTN1Q14203 1278 aa18.09■□□□□ 0.49
SSSCA1-204ENST00000527413 ATP10DQ9P241 1426 aa18.08■□□□□ 0.49
SSSCA1-204ENST00000527413 RALBP1Q15311 655 aa18.08■□□□□ 0.48
SSSCA1-204ENST00000527413 BCL2L12Q9HB09 334 aa18.08■□□□□ 0.48
SSSCA1-204ENST00000527413 BCS1LQ9Y276 419 aa18.08■□□□□ 0.48
SSSCA1-204ENST00000527413 ANKRD31Q8N7Z5 1873 aa18.07■□□□□ 0.48
SSSCA1-204ENST00000527413 A0A087WZG4 1122 aa18.07■□□□□ 0.48
SSSCA1-204ENST00000527413 NFIXQ14938 502 aa18.07■□□□□ 0.48
SSSCA1-204ENST00000527413 PLEKHF1Q96S99 279 aa18.07■□□□□ 0.48
SSSCA1-204ENST00000527413 IL6STP40189 918 aaPredicted RBP18.06■□□□□ 0.48
SSSCA1-204ENST00000527413 DDX10Q13206 875 aaKnown RBP18.06■□□□□ 0.48
SSSCA1-204ENST00000527413 ZNF330Q9Y3S2 320 aaPredicted RBP18.06■□□□□ 0.48
SSSCA1-204ENST00000527413 KCNA3P22001 575 aa18.05■□□□□ 0.48
SSSCA1-204ENST00000527413 A1BGP04217 495 aa18.04■□□□□ 0.48
SSSCA1-204ENST00000527413 COL11A2P13942 1736 aaPredicted RBP18.03■□□□□ 0.48
SSSCA1-204ENST00000527413 MAPK8IP3Q9UPT6 1336 aa18.03■□□□□ 0.48
SSSCA1-204ENST00000527413 PRAMEF22A3QJZ6 481 aa18.03■□□□□ 0.48
SSSCA1-204ENST00000527413 GIGYF1O75420 1035 aaPredicted RBP18.03■□□□□ 0.48
SSSCA1-204ENST00000527413 SERPINB2P05120 415 aa18.03■□□□□ 0.48
SSSCA1-204ENST00000527413 NFE2L2Q16236 605 aa18.03■□□□□ 0.48
SSSCA1-204ENST00000527413 PNNQ9H307 717 aaKnown RBP18.03■□□□□ 0.48
SSSCA1-204ENST00000527413 PIM2Q9P1W9 311 aa18.03■□□□□ 0.48
SSSCA1-204ENST00000527413 USP16Q9Y5T5 823 aa18.03■□□□□ 0.48
SSSCA1-204ENST00000527413 MYBBP1AQ9BQG0 1328 aaKnown RBP18.02■□□□□ 0.48
SSSCA1-204ENST00000527413 SBF1O95248 1867 aa18.02■□□□□ 0.48
SSSCA1-204ENST00000527413 SNRPA1P09661 255 aaKnown RBP18.02■□□□□ 0.48
SSSCA1-204ENST00000527413 CHRNA5P30532 468 aa18.02■□□□□ 0.48
SSSCA1-204ENST00000527413 TAF7Q15545 349 aaPredicted RBP18.02■□□□□ 0.48
SSSCA1-204ENST00000527413 TBC1D2BQ9UPU7 963 aa18.02■□□□□ 0.48
SSSCA1-204ENST00000527413 CARMIL3Q8ND23 1372 aa18.02■□□□□ 0.47
SSSCA1-204ENST00000527413 TBC1D9BQ66K14 1250 aa18.01■□□□□ 0.47
SSSCA1-204ENST00000527413 BICDL1Q6ZP65 573 aa18.01■□□□□ 0.47
SSSCA1-204ENST00000527413 NPM2Q86SE8 214 aaKnown RBP18.01■□□□□ 0.47
SSSCA1-204ENST00000527413 CACNA1SQ13698 1873 aa18.01■□□□□ 0.47
SSSCA1-204ENST00000527413 PIP4K2AP48426 406 aaPredicted RBP18■□□□□ 0.47
SSSCA1-204ENST00000527413 C1QTNF8P60827 252 aa18■□□□□ 0.47
SSSCA1-204ENST00000527413 DALRD3Q5D0E6 543 aaKnown RBP18■□□□□ 0.47
SSSCA1-204ENST00000527413 CAMTA2O94983 1202 aa17.99■□□□□ 0.47
SSSCA1-204ENST00000527413 ARHGAP27Q6ZUM4 889 aa17.99■□□□□ 0.47
SSSCA1-204ENST00000527413 DZIP3Q86Y13 1208 aaKnown RBP17.99■□□□□ 0.47
SSSCA1-204ENST00000527413 PNISRQ8TF01 805 aaKnown RBP17.99■□□□□ 0.47
SSSCA1-204ENST00000527413 MIS18AQ9NYP9 233 aa17.99■□□□□ 0.47
SSSCA1-204ENST00000527413 THUMPD2Q9BTF0 503 aaKnown RBP17.98■□□□□ 0.47
SSSCA1-204ENST00000527413 GPBP1L1Q9HC44 474 aaPredicted RBP17.98■□□□□ 0.47
SSSCA1-204ENST00000527413 ARFGEF2Q9Y6D5 1785 aa17.98■□□□□ 0.47
SSSCA1-204ENST00000527413 ZNF526Q8TF50 670 aaPredicted RBP17.97■□□□□ 0.47
SSSCA1-204ENST00000527413 NUP98P52948 1817 aa17.97■□□□□ 0.47
SSSCA1-204ENST00000527413 CCDC88AQ3V6T2 1871 aa17.97■□□□□ 0.47
SSSCA1-204ENST00000527413 NBPF26B4DH59 902 aa17.95■□□□□ 0.46
SSSCA1-204ENST00000527413 PRR5LQ6MZQ0 368 aa17.95■□□□□ 0.46
SSSCA1-204ENST00000527413 NBPF10Q6P3W6 841 aaKnown RBP17.95■□□□□ 0.46
SSSCA1-204ENST00000527413 NBPF15Q8N660 670 aa17.95■□□□□ 0.46
SSSCA1-204ENST00000527413 TIAM2Q8IVF5 1701 aa17.95■□□□□ 0.46
SSSCA1-204ENST00000527413 EIF4A1P60842 406 aaKnown RBP17.94■□□□□ 0.46
SSSCA1-204ENST00000527413 C2CD5Q86YS7 1000 aa17.94■□□□□ 0.46
SSSCA1-204ENST00000527413 SETDB2Q96T68 719 aa17.94■□□□□ 0.46
SSSCA1-204ENST00000527413 H0YIN7 160 aa17.93■□□□□ 0.46
SSSCA1-204ENST00000527413 RIPK4P57078 832 aa17.93■□□□□ 0.46
SSSCA1-204ENST00000527413 CNBD1Q8NA66 436 aa17.93■□□□□ 0.46
SSSCA1-204ENST00000527413 ZNF652Q9Y2D9 606 aa17.93■□□□□ 0.46
SSSCA1-204ENST00000527413 FER1L6Q2WGJ9 1857 aa17.92■□□□□ 0.46
SSSCA1-204ENST00000527413 TMPOP42166 694 aaKnown RBP17.92■□□□□ 0.46
SSSCA1-204ENST00000527413 CLEC4GQ6UXB4 293 aa17.92■□□□□ 0.46
SSSCA1-204ENST00000527413 CCDC24Q8N4L8 307 aa17.92■□□□□ 0.46
SSSCA1-204ENST00000527413 BRIP1Q9BX63 1249 aa17.92■□□□□ 0.46
SSSCA1-204ENST00000527413 TNRC6CQ9HCJ0 1690 aaKnown RBP17.91■□□□□ 0.46
SSSCA1-204ENST00000527413 SENP3-EIF4A1A0A087X0R7 540 aa17.91■□□□□ 0.46
SSSCA1-204ENST00000527413 RGL2O15211 777 aa17.91■□□□□ 0.46
SSSCA1-204ENST00000527413 NPHP1O15259 732 aa17.91■□□□□ 0.46
SSSCA1-204ENST00000527413 PDE6BP35913 854 aa17.91■□□□□ 0.46
SSSCA1-204ENST00000527413 LMOD3Q0VAK6 560 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms