RNA–Protein interactions for RNA: ENST00000525990.1

SSBP3-210, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 701 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-210ENST00000525990 BCORQ6W2J9 1755 aa16.15■□□□□ 0.18
SSBP3-210ENST00000525990 CANXP27824 592 aaKnown RBP16.14■□□□□ 0.17
SSBP3-210ENST00000525990 DCTN1Q14203 1278 aa16.14■□□□□ 0.17
SSBP3-210ENST00000525990 USPL1Q5W0Q7 1092 aa16.14■□□□□ 0.17
SSBP3-210ENST00000525990 ZNF790Q6PG37 636 aa16.14■□□□□ 0.17
SSBP3-210ENST00000525990 MCM10Q7L590 875 aa16.14■□□□□ 0.17
SSBP3-210ENST00000525990 PARP3Q9Y6F1 533 aa16.14■□□□□ 0.17
SSBP3-210ENST00000525990 HEG1Q9ULI3 1381 aa16.13■□□□□ 0.17
SSBP3-210ENST00000525990 KDM3BQ7LBC6 1761 aa16.13■□□□□ 0.17
SSBP3-210ENST00000525990 DLEC1Q9Y238 1755 aa16.13■□□□□ 0.17
SSBP3-210ENST00000525990 TTC5Q8N0Z6 440 aa16.13■□□□□ 0.17
SSBP3-210ENST00000525990 BCL2L12Q9HB09 334 aa16.13■□□□□ 0.17
SSBP3-210ENST00000525990 NUDCQ9Y266 331 aa16.13■□□□□ 0.17
SSBP3-210ENST00000525990 ANKRD31Q8N7Z5 1873 aa16.13■□□□□ 0.17
SSBP3-210ENST00000525990 DPEP1P16444 411 aa16.12■□□□□ 0.17
SSBP3-210ENST00000525990 VSIG10Q8N0Z9 540 aa16.12■□□□□ 0.17
SSBP3-210ENST00000525990 LAMB4A4D0S4 1761 aa16.12■□□□□ 0.17
SSBP3-210ENST00000525990 ATP10DQ9P241 1426 aa16.11■□□□□ 0.17
SSBP3-210ENST00000525990 PRAMEF22A3QJZ6 481 aa16.11■□□□□ 0.17
SSBP3-210ENST00000525990 POLRMTO00411 1230 aaKnown RBP16.11■□□□□ 0.17
SSBP3-210ENST00000525990 FCHSD2O94868 740 aa16.11■□□□□ 0.17
SSBP3-210ENST00000525990 ADCY9O60503 1353 aa16.11■□□□□ 0.17
SSBP3-210ENST00000525990 CACNA1SQ13698 1873 aa16.1■□□□□ 0.17
SSBP3-210ENST00000525990 BTBD11A6QL63 1104 aa16.1■□□□□ 0.17
SSBP3-210ENST00000525990 ZPR1O75312 459 aa16.1■□□□□ 0.17
SSBP3-210ENST00000525990 KCNA3P22001 575 aa16.1■□□□□ 0.17
SSBP3-210ENST00000525990 TM4SF1P30408 202 aa16.1■□□□□ 0.17
SSBP3-210ENST00000525990 BCS1LQ9Y276 419 aa16.1■□□□□ 0.17
SSBP3-210ENST00000525990 COL11A2P13942 1736 aaPredicted RBP16.1■□□□□ 0.17
SSBP3-210ENST00000525990 A1BGP04217 495 aa16.09■□□□□ 0.17
SSBP3-210ENST00000525990 PIP4K2AP48426 406 aaPredicted RBP16.09■□□□□ 0.17
SSBP3-210ENST00000525990 TGFB2P61812 414 aa16.09■□□□□ 0.17
SSBP3-210ENST00000525990 NFIXQ14938 502 aa16.09■□□□□ 0.17
SSBP3-210ENST00000525990 NARFQ9UHQ1 456 aa16.09■□□□□ 0.17
SSBP3-210ENST00000525990 SBF1O95248 1867 aa16.08■□□□□ 0.17
SSBP3-210ENST00000525990 CHRNA5P30532 468 aa16.08■□□□□ 0.16
SSBP3-210ENST00000525990 EIF5P55010 431 aaKnown RBP16.08■□□□□ 0.16
SSBP3-210ENST00000525990 FMNL2Q96PY5 1086 aa16.08■□□□□ 0.16
SSBP3-210ENST00000525990 ZNF330Q9Y3S2 320 aaPredicted RBP16.08■□□□□ 0.16
SSBP3-210ENST00000525990 CARMIL3Q8ND23 1372 aa16.08■□□□□ 0.16
SSBP3-210ENST00000525990 DDX10Q13206 875 aaKnown RBP16.07■□□□□ 0.16
SSBP3-210ENST00000525990 ZNF526Q8TF50 670 aaPredicted RBP16.07■□□□□ 0.16
SSBP3-210ENST00000525990 PLEKHF1Q96S99 279 aa16.07■□□□□ 0.16
SSBP3-210ENST00000525990 USP16Q9Y5T5 823 aa16.07■□□□□ 0.16
SSBP3-210ENST00000525990 CCDC88AQ3V6T2 1871 aa16.07■□□□□ 0.16
SSBP3-210ENST00000525990 STARD3NLO95772 234 aa16.06■□□□□ 0.16
SSBP3-210ENST00000525990 BICDL1Q6ZP65 573 aa16.06■□□□□ 0.16
SSBP3-210ENST00000525990 RTF1Q92541 710 aaKnown RBP16.06■□□□□ 0.16
SSBP3-210ENST00000525990 MIS18AQ9NYP9 233 aa16.06■□□□□ 0.16
SSBP3-210ENST00000525990 TBC1D2BQ9UPU7 963 aa16.06■□□□□ 0.16
SSBP3-210ENST00000525990 THUMPD2Q9BTF0 503 aaKnown RBP16.05■□□□□ 0.16
SSBP3-210ENST00000525990 C1QTNF8P60827 252 aa16.04■□□□□ 0.16
SSBP3-210ENST00000525990 TBC1D9BQ66K14 1250 aa16.04■□□□□ 0.16
SSBP3-210ENST00000525990 GIGYF1O75420 1035 aaPredicted RBP16.03■□□□□ 0.16
SSBP3-210ENST00000525990 SERPINB2P05120 415 aa16.03■□□□□ 0.16
SSBP3-210ENST00000525990 CCDC24Q8N4L8 307 aa16.03■□□□□ 0.16
SSBP3-210ENST00000525990 ARHGAP27Q6ZUM4 889 aa16.02■□□□□ 0.16
SSBP3-210ENST00000525990 TEX13AQ9BXU3 409 aaPredicted RBP16.02■□□□□ 0.16
SSBP3-210ENST00000525990 NUP98P52948 1817 aa16.01■□□□□ 0.15
SSBP3-210ENST00000525990 HTATSF1O43719 755 aaKnown RBP16.01■□□□□ 0.15
SSBP3-210ENST00000525990 CAMTA2O94983 1202 aa16.01■□□□□ 0.15
SSBP3-210ENST00000525990 IL6STP40189 918 aaPredicted RBP16.01■□□□□ 0.15
SSBP3-210ENST00000525990 PIM2Q9P1W9 311 aa16.01■□□□□ 0.15
SSBP3-210ENST00000525990 TAF7Q15545 349 aaPredicted RBP16■□□□□ 0.15
SSBP3-210ENST00000525990 NFE2L2Q16236 605 aa16■□□□□ 0.15
SSBP3-210ENST00000525990 TIAM2Q8IVF5 1701 aa15.99■□□□□ 0.15
SSBP3-210ENST00000525990 A0A087WZG4 1122 aa15.99■□□□□ 0.15
SSBP3-210ENST00000525990 NBPF26B4DH59 902 aa15.99■□□□□ 0.15
SSBP3-210ENST00000525990 SNRPA1P09661 255 aaKnown RBP15.99■□□□□ 0.15
SSBP3-210ENST00000525990 DALRD3Q5D0E6 543 aaKnown RBP15.99■□□□□ 0.15
SSBP3-210ENST00000525990 NBPF10Q6P3W6 841 aaKnown RBP15.99■□□□□ 0.15
SSBP3-210ENST00000525990 NBPF15Q8N660 670 aa15.99■□□□□ 0.15
SSBP3-210ENST00000525990 GPBP1L1Q9HC44 474 aaPredicted RBP15.99■□□□□ 0.15
SSBP3-210ENST00000525990 ARFGEF2Q9Y6D5 1785 aa15.99■□□□□ 0.15
SSBP3-210ENST00000525990 RALBP1Q15311 655 aa15.98■□□□□ 0.15
SSBP3-210ENST00000525990 DZIP3Q86Y13 1208 aaKnown RBP15.98■□□□□ 0.15
SSBP3-210ENST00000525990 SLX4Q8IY92 1834 aa15.98■□□□□ 0.15
SSBP3-210ENST00000525990 MAPK8IP3Q9UPT6 1336 aa15.97■□□□□ 0.15
SSBP3-210ENST00000525990 SENP3-EIF4A1A0A087X0R7 540 aa15.97■□□□□ 0.15
SSBP3-210ENST00000525990 NEFMP07197 916 aa15.97■□□□□ 0.15
SSBP3-210ENST00000525990 PRR5LQ6MZQ0 368 aa15.97■□□□□ 0.15
SSBP3-210ENST00000525990 TNRC6CQ9HCJ0 1690 aaKnown RBP15.97■□□□□ 0.15
SSBP3-210ENST00000525990 FER1L6Q2WGJ9 1857 aa15.97■□□□□ 0.15
SSBP3-210ENST00000525990 MYBBP1AQ9BQG0 1328 aaKnown RBP15.96■□□□□ 0.15
SSBP3-210ENST00000525990 RASSF7Q02833 373 aa15.96■□□□□ 0.15
SSBP3-210ENST00000525990 C2CD5Q86YS7 1000 aa15.96■□□□□ 0.15
SSBP3-210ENST00000525990 CCDC146Q8IYE0 955 aa15.96■□□□□ 0.15
SSBP3-210ENST00000525990 PRELPP51888 382 aa15.95■□□□□ 0.14
SSBP3-210ENST00000525990 C9orf131Q5VYM1 1079 aa15.95■□□□□ 0.14
SSBP3-210ENST00000525990 RRP7AQ9Y3A4 280 aaKnown RBP15.95■□□□□ 0.14
SSBP3-210ENST00000525990 EIF4A1P60842 406 aaKnown RBP15.94■□□□□ 0.14
SSBP3-210ENST00000525990 DICER1Q9UPY3 1922 aaKnown RBP15.94■□□□□ 0.14
SSBP3-210ENST00000525990 KIF3CO14782 793 aa15.93■□□□□ 0.14
SSBP3-210ENST00000525990 HLFQ16534 295 aa15.93■□□□□ 0.14
SSBP3-210ENST00000525990 NPM2Q86SE8 214 aaKnown RBP15.93■□□□□ 0.14
SSBP3-210ENST00000525990 NGEFQ8N5V2 710 aa15.93■□□□□ 0.14
SSBP3-210ENST00000525990 SETDB2Q96T68 719 aa15.93■□□□□ 0.14
SSBP3-210ENST00000525990 TMPOP42166 694 aaKnown RBP15.92■□□□□ 0.14
SSBP3-210ENST00000525990 RIPK4P57078 832 aa15.92■□□□□ 0.14
SSBP3-210ENST00000525990 CNBD1Q8NA66 436 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms