RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 TRIM67Q6ZTA4 783 aa7.77□□□□□ -1.17
CD44-220ENST00000525688 PPARGC1BQ86YN6 1023 aaKnown RBP7.77□□□□□ -1.17
CD44-220ENST00000525688 SAP130Q9H0E3 1048 aa7.77□□□□□ -1.17
CD44-220ENST00000525688 DCTN4Q9UJW0 460 aa7.77□□□□□ -1.17
CD44-220ENST00000525688 CHMP3Q9Y3E7 222 aa7.77□□□□□ -1.17
CD44-220ENST00000525688 EML1O00423 815 aa7.76□□□□□ -1.17
CD44-220ENST00000525688 GPC1P35052 558 aa7.76□□□□□ -1.17
CD44-220ENST00000525688 RBM25P49756 843 aaKnown RBP7.76□□□□□ -1.17
CD44-220ENST00000525688 COX20Q5RI15 118 aa7.76□□□□□ -1.17
CD44-220ENST00000525688 ZNF428Q96B54 188 aa7.76□□□□□ -1.17
CD44-220ENST00000525688 AGBL1Q96MI9 1066 aa7.76□□□□□ -1.17
CD44-220ENST00000525688 NLRP3Q96P20 1036 aa7.76□□□□□ -1.17
CD44-220ENST00000525688 SERTM1A2A2V5 107 aa7.75□□□□□ -1.17
CD44-220ENST00000525688 TNFRSF10AO00220 468 aa7.75□□□□□ -1.17
CD44-220ENST00000525688 NOS2P35228 1153 aa7.75□□□□□ -1.17
CD44-220ENST00000525688 MEIOBQ8N635 442 aa7.75□□□□□ -1.17
CD44-220ENST00000525688 ZDHHC1Q8WTX9 485 aa7.75□□□□□ -1.17
CD44-220ENST00000525688 ASB16Q96NS5 453 aa7.75□□□□□ -1.17
CD44-220ENST00000525688 QTRT2Q9H974 415 aaKnown RBP7.75□□□□□ -1.17
CD44-220ENST00000525688 ANKRD33BA6NCL7 494 aa7.74□□□□□ -1.17
CD44-220ENST00000525688 MEN1O00255 615 aa7.74□□□□□ -1.17
CD44-220ENST00000525688 TNFRSF10BO14763 440 aa7.74□□□□□ -1.17
CD44-220ENST00000525688 RELBQ01201 579 aa7.74□□□□□ -1.17
CD44-220ENST00000525688 NPAS4Q8IUM7 802 aa7.74□□□□□ -1.17
CD44-220ENST00000525688 ZSCAN10Q96SZ4 725 aaPredicted RBP7.74□□□□□ -1.17
CD44-220ENST00000525688 GRIP2Q9C0E4 1043 aa7.74□□□□□ -1.17
CD44-220ENST00000525688 ZNF395Q9H8N7 513 aaPredicted RBP7.74□□□□□ -1.17
CD44-220ENST00000525688 STIM2Q9P246 746 aa7.74□□□□□ -1.17
CD44-220ENST00000525688 MPSTP25325 297 aa7.73□□□□□ -1.17
CD44-220ENST00000525688 MAPK1P28482 360 aa7.73□□□□□ -1.17
CD44-220ENST00000525688 RNF144AP50876 292 aaPredicted RBP7.73□□□□□ -1.17
CD44-220ENST00000525688 COL19A1Q14993 1142 aa7.73□□□□□ -1.17
CD44-220ENST00000525688 L3MBTL2Q969R5 705 aa7.73□□□□□ -1.17
CD44-220ENST00000525688 TSEN34Q9BSV6 310 aaKnown RBP7.73□□□□□ -1.17
CD44-220ENST00000525688 NIFKQ9BYG3 293 aaKnown RBP7.73□□□□□ -1.17
CD44-220ENST00000525688 LRFN2Q9ULH4 789 aa7.73□□□□□ -1.17
CD44-220ENST00000525688 E9PSI1 815 aa7.72□□□□□ -1.17
CD44-220ENST00000525688 C1orf53Q5VUE5 145 aa7.72□□□□□ -1.17
CD44-220ENST00000525688 ALKBH2Q6NS38 261 aa7.72□□□□□ -1.17
CD44-220ENST00000525688 ZSCAN29Q8IWY8 852 aaPredicted RBP7.72□□□□□ -1.17
CD44-220ENST00000525688 RHBDD1Q8TEB9 315 aa7.72□□□□□ -1.17
CD44-220ENST00000525688 HPS1Q92902 700 aa7.72□□□□□ -1.17
CD44-220ENST00000525688 CITED4Q96RK1 184 aa7.72□□□□□ -1.17
CD44-220ENST00000525688 RBCK1Q9BYM8 510 aa7.72□□□□□ -1.17
CD44-220ENST00000525688 CABP1Q9NZU7 370 aa7.72□□□□□ -1.17
CD44-220ENST00000525688 SPINT1O43278 529 aa7.71□□□□□ -1.18
CD44-220ENST00000525688 RTN1Q16799 776 aa7.71□□□□□ -1.18
CD44-220ENST00000525688 SH3PXD2AQ5TCZ1 1133 aa7.71□□□□□ -1.18
CD44-220ENST00000525688 TMEM214Q6NUQ4 689 aaKnown RBP7.71□□□□□ -1.18
CD44-220ENST00000525688 ALDH16A1Q8IZ83 802 aa7.71□□□□□ -1.18
CD44-220ENST00000525688 RGL4Q8IZJ4 473 aa7.71□□□□□ -1.18
CD44-220ENST00000525688 ABTB2Q8N961 1025 aa7.71□□□□□ -1.18
CD44-220ENST00000525688 RGS20O76081 388 aa7.7□□□□□ -1.18
CD44-220ENST00000525688 BRD2P25440 801 aaKnown RBP7.7□□□□□ -1.18
CD44-220ENST00000525688 GTF2E1P29083 439 aaPredicted RBP7.7□□□□□ -1.18
CD44-220ENST00000525688 EIF1AXP47813 144 aaKnown RBP7.7□□□□□ -1.18
CD44-220ENST00000525688 C11orf91Q3C1V1 193 aa7.7□□□□□ -1.18
CD44-220ENST00000525688 BCL2L13Q9BXK5 485 aa7.7□□□□□ -1.18
CD44-220ENST00000525688 ZNF232Q9UNY5 417 aa7.7□□□□□ -1.18
CD44-220ENST00000525688 HCN4Q9Y3Q4 1203 aa7.7□□□□□ -1.18
CD44-220ENST00000525688 UNCXA6NJT0 531 aa7.69□□□□□ -1.18
CD44-220ENST00000525688 NDUFB5O43674 189 aa7.69□□□□□ -1.18
CD44-220ENST00000525688 ZNF16P17020 682 aaPredicted RBP7.69□□□□□ -1.18
CD44-220ENST00000525688 GNASQ5JWF2 1037 aa7.69□□□□□ -1.18
CD44-220ENST00000525688 FBXO33Q7Z6M2 555 aa7.69□□□□□ -1.18
CD44-220ENST00000525688 LINC00528Q8N1L1 170 aa7.69□□□□□ -1.18
CD44-220ENST00000525688 SPATA31C2B4DYI2 1134 aa7.68□□□□□ -1.18
CD44-220ENST00000525688 CAPN5O15484 640 aaPredicted RBP7.68□□□□□ -1.18
CD44-220ENST00000525688 FZD6O60353 706 aa7.68□□□□□ -1.18
CD44-220ENST00000525688 SLC27A3Q5K4L6 730 aa7.68□□□□□ -1.18
CD44-220ENST00000525688 C7orf43Q8WVR3 580 aa7.68□□□□□ -1.18
CD44-220ENST00000525688 NGLY1Q96IV0 654 aa7.68□□□□□ -1.18
CD44-220ENST00000525688 INSM2Q96T92 566 aaPredicted RBP7.68□□□□□ -1.18
CD44-220ENST00000525688 PHACTR1Q9C0D0 580 aa7.68□□□□□ -1.18
CD44-220ENST00000525688 ZDHHC3Q9NYG2 299 aa7.68□□□□□ -1.18
CD44-220ENST00000525688 BRPF3Q9ULD4 1205 aa7.68□□□□□ -1.18
CD44-220ENST00000525688 PARP3Q9Y6F1 533 aa7.68□□□□□ -1.18
CD44-220ENST00000525688 UPP2O95045 317 aa7.67□□□□□ -1.18
CD44-220ENST00000525688 C4orf17Q53FE4 359 aa7.67□□□□□ -1.18
CD44-220ENST00000525688 WDR44Q5JSH3 913 aa7.67□□□□□ -1.18
CD44-220ENST00000525688 FAM26DQ5JW98 314 aa7.67□□□□□ -1.18
CD44-220ENST00000525688 TMC7Q7Z402 723 aa7.67□□□□□ -1.18
CD44-220ENST00000525688 ZBTB39O15060 712 aa7.66□□□□□ -1.18
CD44-220ENST00000525688 AVPP01185 164 aa7.66□□□□□ -1.18
CD44-220ENST00000525688 TXLNAP40222 546 aa7.66□□□□□ -1.18
CD44-220ENST00000525688 DGKZQ13574 1117 aa7.66□□□□□ -1.18
CD44-220ENST00000525688 ZNF326Q5BKZ1 582 aaKnown RBP7.66□□□□□ -1.18
CD44-220ENST00000525688 GIPC2Q8TF65 315 aa7.66□□□□□ -1.18
CD44-220ENST00000525688 IFT43Q96FT9 208 aa7.66□□□□□ -1.18
CD44-220ENST00000525688 GPC6Q9Y625 555 aaPredicted RBP7.66□□□□□ -1.18
CD44-220ENST00000525688 TREHO43280 583 aa7.65□□□□□ -1.18
CD44-220ENST00000525688 IGHA2P01877 340 aa7.65□□□□□ -1.18
CD44-220ENST00000525688 CTSOP43234 321 aaPredicted RBP7.65□□□□□ -1.18
CD44-220ENST00000525688 DSC3Q14574 896 aa7.65□□□□□ -1.18
CD44-220ENST00000525688 HIF1AQ16665 826 aa7.65□□□□□ -1.18
CD44-220ENST00000525688 ETFBKMTQ8IXQ9 262 aa7.65□□□□□ -1.18
CD44-220ENST00000525688 DMRTB1Q96MA1 342 aa7.65□□□□□ -1.18
CD44-220ENST00000525688 FAM129BQ96TA1 746 aa7.65□□□□□ -1.18
CD44-220ENST00000525688 POLMQ9NP87 494 aaPredicted RBP7.65□□□□□ -1.18
CD44-220ENST00000525688 CCDC87Q9NVE4 849 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms