RNA–Protein interactions for RNA: ENST00000524533.1

HIF3A-208, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 507 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-208ENST00000524533 KCNA3P22001 575 aa21.9■■□□□ 1.1
HIF3A-208ENST00000524533 TTC5Q8N0Z6 440 aa21.9■■□□□ 1.1
HIF3A-208ENST00000524533 GAS2L2Q8NHY3 880 aa21.9■■□□□ 1.1
HIF3A-208ENST00000524533 PIM2Q9P1W9 311 aa21.9■■□□□ 1.1
HIF3A-208ENST00000524533 NRXN2Q9P2S2 1712 aa21.89■■□□□ 1.1
HIF3A-208ENST00000524533 TM4SF1P30408 202 aa21.89■■□□□ 1.09
HIF3A-208ENST00000524533 NARFQ9UHQ1 456 aa21.89■■□□□ 1.09
HIF3A-208ENST00000524533 CEP350Q5VT06 3117 aa21.89■■□□□ 1.09
HIF3A-208ENST00000524533 GNAT3A8MTJ3 354 aa21.88■■□□□ 1.09
HIF3A-208ENST00000524533 TEFQ10587 303 aa21.88■■□□□ 1.09
HIF3A-208ENST00000524533 DALRD3Q5D0E6 543 aaKnown RBP21.87■■□□□ 1.09
HIF3A-208ENST00000524533 SCN7AQ01118 1682 aa21.87■■□□□ 1.09
HIF3A-208ENST00000524533 DLEC1Q9Y238 1755 aa21.87■■□□□ 1.09
HIF3A-208ENST00000524533 KIF3CO14782 793 aa21.86■■□□□ 1.09
HIF3A-208ENST00000524533 CHRNA5P30532 468 aa21.86■■□□□ 1.09
HIF3A-208ENST00000524533 CFAP53Q96M91 514 aa21.86■■□□□ 1.09
HIF3A-208ENST00000524533 CANXP27824 592 aaKnown RBP21.85■■□□□ 1.09
HIF3A-208ENST00000524533 NFIXQ14938 502 aa21.85■■□□□ 1.09
HIF3A-208ENST00000524533 STARD3NLO95772 234 aa21.84■■□□□ 1.09
HIF3A-208ENST00000524533 HSPA6P17066 643 aa21.84■■□□□ 1.09
HIF3A-208ENST00000524533 IL17REQ8NFR9 667 aa21.84■■□□□ 1.09
HIF3A-208ENST00000524533 HEG1Q9ULI3 1381 aa21.84■■□□□ 1.09
HIF3A-208ENST00000524533 ZNF790Q6PG37 636 aa21.83■■□□□ 1.09
HIF3A-208ENST00000524533 ZNF496Q96IT1 587 aaPredicted RBP21.83■■□□□ 1.09
HIF3A-208ENST00000524533 PRKAR2BP31323 418 aa21.82■■□□□ 1.08
HIF3A-208ENST00000524533 C9orf131Q5VYM1 1079 aa21.82■■□□□ 1.08
HIF3A-208ENST00000524533 BCL2L12Q9HB09 334 aa21.82■■□□□ 1.08
HIF3A-208ENST00000524533 CEMIPQ8WUJ3 1361 aa21.82■■□□□ 1.08
HIF3A-208ENST00000524533 RSPH6AQ9H0K4 717 aa21.81■■□□□ 1.08
HIF3A-208ENST00000524533 A0A087WZG4 1122 aa21.8■■□□□ 1.08
HIF3A-208ENST00000524533 SERPINB2P05120 415 aa21.8■■□□□ 1.08
HIF3A-208ENST00000524533 EIF5P55010 431 aaKnown RBP21.8■■□□□ 1.08
HIF3A-208ENST00000524533 TEX13AQ9BXU3 409 aaPredicted RBP21.8■■□□□ 1.08
HIF3A-208ENST00000524533 PHACTR3Q96KR7 559 aa21.79■■□□□ 1.08
HIF3A-208ENST00000524533 FMNL2Q96PY5 1086 aa21.79■■□□□ 1.08
HIF3A-208ENST00000524533 NUDCQ9Y266 331 aa21.79■■□□□ 1.08
HIF3A-208ENST00000524533 SBF1O95248 1867 aa21.79■■□□□ 1.08
HIF3A-208ENST00000524533 CARMIL3Q8ND23 1372 aa21.78■■□□□ 1.08
HIF3A-208ENST00000524533 NMRK2Q9NPI5 230 aa21.78■■□□□ 1.08
HIF3A-208ENST00000524533 RNF181Q9P0P0 153 aa21.78■■□□□ 1.08
HIF3A-208ENST00000524533 ZNF330Q9Y3S2 320 aaPredicted RBP21.78■■□□□ 1.08
HIF3A-208ENST00000524533 BCORQ6W2J9 1755 aa21.77■■□□□ 1.08
HIF3A-208ENST00000524533 TNRC6CQ9HCJ0 1690 aaKnown RBP21.77■■□□□ 1.08
HIF3A-208ENST00000524533 BICDL1Q6ZP65 573 aa21.77■■□□□ 1.08
HIF3A-208ENST00000524533 ANKRD31Q8N7Z5 1873 aa21.77■■□□□ 1.08
HIF3A-208ENST00000524533 TOMM70O94826 608 aa21.76■■□□□ 1.07
HIF3A-208ENST00000524533 PPP2R1AP30153 589 aa21.76■■□□□ 1.07
HIF3A-208ENST00000524533 BTBD11A6QL63 1104 aa21.75■■□□□ 1.07
HIF3A-208ENST00000524533 U2AF1L5P0DN76 240 aaPredicted RBP21.75■■□□□ 1.07
HIF3A-208ENST00000524533 IL6STP40189 918 aaPredicted RBP21.75■■□□□ 1.07
HIF3A-208ENST00000524533 U2AF1Q01081 240 aaKnown RBP eCLIP21.75■■□□□ 1.07
HIF3A-208ENST00000524533 COL11A2P13942 1736 aaPredicted RBP21.75■■□□□ 1.07
HIF3A-208ENST00000524533 NPM2Q86SE8 214 aaKnown RBP21.74■■□□□ 1.07
HIF3A-208ENST00000524533 C2CD5Q86YS7 1000 aa21.74■■□□□ 1.07
HIF3A-208ENST00000524533 TIAM2Q8IVF5 1701 aa21.74■■□□□ 1.07
HIF3A-208ENST00000524533 KDM2BQ8NHM5 1336 aa21.74■■□□□ 1.07
HIF3A-208ENST00000524533 RASSF7Q02833 373 aa21.73■■□□□ 1.07
HIF3A-208ENST00000524533 TBC1D9BQ66K14 1250 aa21.73■■□□□ 1.07
HIF3A-208ENST00000524533 TBC1D2BQ9UPU7 963 aa21.73■■□□□ 1.07
HIF3A-208ENST00000524533 H0YIN7 160 aa21.72■■□□□ 1.07
HIF3A-208ENST00000524533 KCNQ3O43525 872 aa21.72■■□□□ 1.07
HIF3A-208ENST00000524533 A1BGP04217 495 aa21.72■■□□□ 1.07
HIF3A-208ENST00000524533 TTLL6Q8N841 843 aa21.72■■□□□ 1.07
HIF3A-208ENST00000524533 RTF1Q92541 710 aaKnown RBP21.72■■□□□ 1.07
HIF3A-208ENST00000524533 C16orf71Q8IYS4 520 aaPredicted RBP21.71■■□□□ 1.07
HIF3A-208ENST00000524533 APLP1P51693 650 aa21.7■■□□□ 1.06
HIF3A-208ENST00000524533 MCM10Q7L590 875 aa21.7■■□□□ 1.06
HIF3A-208ENST00000524533 PRR5LQ6MZQ0 368 aa21.69■■□□□ 1.06
HIF3A-208ENST00000524533 ZC3H4Q9UPT8 1303 aaKnown RBP21.69■■□□□ 1.06
HIF3A-208ENST00000524533 WDR90Q96KV7 1748 aa21.69■■□□□ 1.06
HIF3A-208ENST00000524533 CAMTA2O94983 1202 aa21.68■■□□□ 1.06
HIF3A-208ENST00000524533 DZIP3Q86Y13 1208 aaKnown RBP21.68■■□□□ 1.06
HIF3A-208ENST00000524533 RBM46Q8TBY0 533 aaKnown RBP21.68■■□□□ 1.06
HIF3A-208ENST00000524533 BRIP1Q9BX63 1249 aa21.68■■□□□ 1.06
HIF3A-208ENST00000524533 LAMB4A4D0S4 1761 aa21.68■■□□□ 1.06
HIF3A-208ENST00000524533 CCDC88AQ3V6T2 1871 aa21.68■■□□□ 1.06
HIF3A-208ENST00000524533 CACNA1SQ13698 1873 aa21.67■■□□□ 1.06
HIF3A-208ENST00000524533 LMNB1P20700 586 aa21.67■■□□□ 1.06
HIF3A-208ENST00000524533 PDE6BP35913 854 aa21.67■■□□□ 1.06
HIF3A-208ENST00000524533 PDZRN3Q9UPQ7 1066 aa21.67■■□□□ 1.06
HIF3A-208ENST00000524533 DLG5Q8TDM6 1919 aa21.67■■□□□ 1.06
HIF3A-208ENST00000524533 NPHP1O15259 732 aa21.66■■□□□ 1.06
HIF3A-208ENST00000524533 PIP4K2AP48426 406 aaPredicted RBP21.66■■□□□ 1.06
HIF3A-208ENST00000524533 DCTN1Q14203 1278 aa21.66■■□□□ 1.06
HIF3A-208ENST00000524533 CCDC24Q8N4L8 307 aa21.66■■□□□ 1.06
HIF3A-208ENST00000524533 CNBD1Q8NA66 436 aa21.66■■□□□ 1.06
HIF3A-208ENST00000524533 ZNF622Q969S3 477 aaKnown RBP eCLIP21.66■■□□□ 1.06
HIF3A-208ENST00000524533 SETDB2Q96T68 719 aa21.66■■□□□ 1.06
HIF3A-208ENST00000524533 USP16Q9Y5T5 823 aa21.66■■□□□ 1.06
HIF3A-208ENST00000524533 ARFGEF2Q9Y6D5 1785 aa21.66■■□□□ 1.06
HIF3A-208ENST00000524533 PRAMEF22A3QJZ6 481 aa21.65■■□□□ 1.06
HIF3A-208ENST00000524533 HTATSF1O43719 755 aaKnown RBP21.65■■□□□ 1.06
HIF3A-208ENST00000524533 SNRPA1P09661 255 aaKnown RBP21.65■■□□□ 1.06
HIF3A-208ENST00000524533 RRAGCQ9HB90 399 aa21.65■■□□□ 1.06
HIF3A-208ENST00000524533 NFKBIEO00221 500 aa21.64■■□□□ 1.05
HIF3A-208ENST00000524533 ST5P78524 1137 aa21.64■■□□□ 1.05
HIF3A-208ENST00000524533 FER1L6Q2WGJ9 1857 aa21.64■■□□□ 1.05
HIF3A-208ENST00000524533 KDM3BQ7LBC6 1761 aa21.64■■□□□ 1.05
HIF3A-208ENST00000524533 PRELPP51888 382 aa21.63■■□□□ 1.05
HIF3A-208ENST00000524533 NEFMP07197 916 aa21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms