RNA–Protein interactions for RNA: ENST00000519623.1

CSMD1-205, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 4

Gene CSMD1, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-205ENST00000519623 ZNF790Q6PG37 636 aa16.7■□□□□ 0.26
CSMD1-205ENST00000519623 ZNF496Q96IT1 587 aaPredicted RBP16.7■□□□□ 0.26
CSMD1-205ENST00000519623 NARFQ9UHQ1 456 aa16.7■□□□□ 0.26
CSMD1-205ENST00000519623 TEFQ10587 303 aa16.69■□□□□ 0.26
CSMD1-205ENST00000519623 TTC5Q8N0Z6 440 aa16.69■□□□□ 0.26
CSMD1-205ENST00000519623 BCL2L12Q9HB09 334 aa16.69■□□□□ 0.26
CSMD1-205ENST00000519623 BRCA1P38398 1863 aaKnown RBP16.69■□□□□ 0.26
CSMD1-205ENST00000519623 CEMIPQ8WUJ3 1361 aa16.68■□□□□ 0.26
CSMD1-205ENST00000519623 STARD3NLO95772 234 aa16.68■□□□□ 0.26
CSMD1-205ENST00000519623 GPBP1L1Q9HC44 474 aaPredicted RBP16.68■□□□□ 0.26
CSMD1-205ENST00000519623 NUDCQ9Y266 331 aa16.68■□□□□ 0.26
CSMD1-205ENST00000519623 SIPA1L3O60292 1781 aaPredicted RBP16.68■□□□□ 0.26
CSMD1-205ENST00000519623 COL15A1P39059 1388 aa16.67■□□□□ 0.26
CSMD1-205ENST00000519623 SENP3-EIF4A1A0A087X0R7 540 aa16.67■□□□□ 0.26
CSMD1-205ENST00000519623 FCHSD2O94868 740 aa16.67■□□□□ 0.26
CSMD1-205ENST00000519623 CANXP27824 592 aaKnown RBP16.67■□□□□ 0.26
CSMD1-205ENST00000519623 EIF5P55010 431 aaKnown RBP16.67■□□□□ 0.26
CSMD1-205ENST00000519623 NFIXQ14938 502 aa16.67■□□□□ 0.26
CSMD1-205ENST00000519623 ARHGAP27Q6ZUM4 889 aa16.67■□□□□ 0.26
CSMD1-205ENST00000519623 PIM2Q9P1W9 311 aa16.67■□□□□ 0.26
CSMD1-205ENST00000519623 HEG1Q9ULI3 1381 aa16.66■□□□□ 0.26
CSMD1-205ENST00000519623 KCNQ3O43525 872 aa16.66■□□□□ 0.26
CSMD1-205ENST00000519623 U2AF1L5P0DN76 240 aaPredicted RBP16.66■□□□□ 0.26
CSMD1-205ENST00000519623 U2AF1Q01081 240 aaKnown RBP eCLIP16.66■□□□□ 0.26
CSMD1-205ENST00000519623 ZNF526Q8TF50 670 aaPredicted RBP16.66■□□□□ 0.26
CSMD1-205ENST00000519623 TEX13AQ9BXU3 409 aaPredicted RBP16.66■□□□□ 0.26
CSMD1-205ENST00000519623 CHRNA5P30532 468 aa16.65■□□□□ 0.26
CSMD1-205ENST00000519623 AFDNP55196 1824 aaKnown RBP16.63■□□□□ 0.25
CSMD1-205ENST00000519623 ARFGEF1Q9Y6D6 1849 aa16.63■□□□□ 0.25
CSMD1-205ENST00000519623 A0A087WZG4 1122 aa16.63■□□□□ 0.25
CSMD1-205ENST00000519623 BTBD11A6QL63 1104 aa16.63■□□□□ 0.25
CSMD1-205ENST00000519623 SERPINB2P05120 415 aa16.63■□□□□ 0.25
CSMD1-205ENST00000519623 DALRD3Q5D0E6 543 aaKnown RBP16.63■□□□□ 0.25
CSMD1-205ENST00000519623 FMNL2Q96PY5 1086 aa16.63■□□□□ 0.25
CSMD1-205ENST00000519623 A1BGP04217 495 aa16.62■□□□□ 0.25
CSMD1-205ENST00000519623 NRXN2Q9P2S2 1712 aa16.62■□□□□ 0.25
CSMD1-205ENST00000519623 KIF3CO14782 793 aa16.61■□□□□ 0.25
CSMD1-205ENST00000519623 IL6STP40189 918 aaPredicted RBP16.61■□□□□ 0.25
CSMD1-205ENST00000519623 MCM10Q7L590 875 aa16.61■□□□□ 0.25
CSMD1-205ENST00000519623 HTATSF1O43719 755 aaKnown RBP16.6■□□□□ 0.25
CSMD1-205ENST00000519623 DCTN1Q14203 1278 aa16.6■□□□□ 0.25
CSMD1-205ENST00000519623 TBC1D2BQ9UPU7 963 aa16.6■□□□□ 0.25
CSMD1-205ENST00000519623 USP16Q9Y5T5 823 aa16.6■□□□□ 0.25
CSMD1-205ENST00000519623 C9orf131Q5VYM1 1079 aa16.59■□□□□ 0.25
CSMD1-205ENST00000519623 TBC1D9BQ66K14 1250 aa16.59■□□□□ 0.25
CSMD1-205ENST00000519623 BICDL1Q6ZP65 573 aa16.59■□□□□ 0.25
CSMD1-205ENST00000519623 RTF1Q92541 710 aaKnown RBP16.59■□□□□ 0.25
CSMD1-205ENST00000519623 PRAMEF22A3QJZ6 481 aa16.58■□□□□ 0.24
CSMD1-205ENST00000519623 CAMTA2O94983 1202 aa16.57■□□□□ 0.24
CSMD1-205ENST00000519623 ZNF330Q9Y3S2 320 aaPredicted RBP16.57■□□□□ 0.24
CSMD1-205ENST00000519623 CARMIL3Q8ND23 1372 aa16.56■□□□□ 0.24
CSMD1-205ENST00000519623 SNRPA1P09661 255 aaKnown RBP16.56■□□□□ 0.24
CSMD1-205ENST00000519623 TAF7Q15545 349 aaPredicted RBP16.56■□□□□ 0.24
CSMD1-205ENST00000519623 PLEKHF1Q96S99 279 aa16.56■□□□□ 0.24
CSMD1-205ENST00000519623 SBF1O95248 1867 aa16.56■□□□□ 0.24
CSMD1-205ENST00000519623 PIP4K2AP48426 406 aaPredicted RBP16.55■□□□□ 0.24
CSMD1-205ENST00000519623 C2CD5Q86YS7 1000 aa16.55■□□□□ 0.24
CSMD1-205ENST00000519623 TTLL6Q8N841 843 aa16.55■□□□□ 0.24
CSMD1-205ENST00000519623 CEP350Q5VT06 3117 aa16.54■□□□□ 0.24
CSMD1-205ENST00000519623 H0YIN7 160 aa16.54■□□□□ 0.24
CSMD1-205ENST00000519623 PRR5LQ6MZQ0 368 aa16.54■□□□□ 0.24
CSMD1-205ENST00000519623 BRIP1Q9BX63 1249 aa16.54■□□□□ 0.24
CSMD1-205ENST00000519623 NMRK2Q9NPI5 230 aa16.54■□□□□ 0.24
CSMD1-205ENST00000519623 MIS18AQ9NYP9 233 aa16.54■□□□□ 0.24
CSMD1-205ENST00000519623 DLEC1Q9Y238 1755 aa16.54■□□□□ 0.24
CSMD1-205ENST00000519623 SCN7AQ01118 1682 aa16.53■□□□□ 0.24
CSMD1-205ENST00000519623 NBPF26B4DH59 902 aa16.53■□□□□ 0.24
CSMD1-205ENST00000519623 HSPA6P17066 643 aa16.53■□□□□ 0.24
CSMD1-205ENST00000519623 NBPF10Q6P3W6 841 aaKnown RBP16.53■□□□□ 0.24
CSMD1-205ENST00000519623 NPM2Q86SE8 214 aaKnown RBP16.53■□□□□ 0.24
CSMD1-205ENST00000519623 DZIP3Q86Y13 1208 aaKnown RBP16.53■□□□□ 0.24
CSMD1-205ENST00000519623 CCDC24Q8N4L8 307 aa16.53■□□□□ 0.24
CSMD1-205ENST00000519623 NBPF15Q8N660 670 aa16.53■□□□□ 0.24
CSMD1-205ENST00000519623 SETDB2Q96T68 719 aa16.53■□□□□ 0.24
CSMD1-205ENST00000519623 RNF181Q9P0P0 153 aa16.53■□□□□ 0.24
CSMD1-205ENST00000519623 ANKRD31Q8N7Z5 1873 aa16.52■□□□□ 0.24
CSMD1-205ENST00000519623 PRELPP51888 382 aa16.52■□□□□ 0.24
CSMD1-205ENST00000519623 DLG5Q8TDM6 1919 aa16.52■□□□□ 0.23
CSMD1-205ENST00000519623 TOMM70O94826 608 aa16.51■□□□□ 0.23
CSMD1-205ENST00000519623 PDE6BP35913 854 aa16.51■□□□□ 0.23
CSMD1-205ENST00000519623 CLEC4GQ6UXB4 293 aa16.51■□□□□ 0.23
CSMD1-205ENST00000519623 PDZRN3Q9UPQ7 1066 aa16.51■□□□□ 0.23
CSMD1-205ENST00000519623 NEFMP07197 916 aa16.5■□□□□ 0.23
CSMD1-205ENST00000519623 RASSF7Q02833 373 aa16.5■□□□□ 0.23
CSMD1-205ENST00000519623 NFE2L2Q16236 605 aa16.5■□□□□ 0.23
CSMD1-205ENST00000519623 ZNF622Q969S3 477 aaKnown RBP eCLIP16.49■□□□□ 0.23
CSMD1-205ENST00000519623 BCORQ6W2J9 1755 aa16.49■□□□□ 0.23
CSMD1-205ENST00000519623 LMNB1P20700 586 aa16.48■□□□□ 0.23
CSMD1-205ENST00000519623 RALBP1Q15311 655 aa16.48■□□□□ 0.23
CSMD1-205ENST00000519623 CNBD1Q8NA66 436 aa16.48■□□□□ 0.23
CSMD1-205ENST00000519623 PNISRQ8TF01 805 aaKnown RBP16.48■□□□□ 0.23
CSMD1-205ENST00000519623 THUMPD2Q9BTF0 503 aaKnown RBP16.48■□□□□ 0.23
CSMD1-205ENST00000519623 PNNQ9H307 717 aaKnown RBP16.48■□□□□ 0.23
CSMD1-205ENST00000519623 NFKBIEO00221 500 aa16.47■□□□□ 0.23
CSMD1-205ENST00000519623 RGL2O15211 777 aa16.47■□□□□ 0.23
CSMD1-205ENST00000519623 EIF4A1P60842 406 aaKnown RBP16.47■□□□□ 0.23
CSMD1-205ENST00000519623 RRAGCQ9HB90 399 aa16.47■□□□□ 0.23
CSMD1-205ENST00000519623 CCDC88AQ3V6T2 1871 aa16.47■□□□□ 0.23
CSMD1-205ENST00000519623 KDM2BQ8NHM5 1336 aa16.46■□□□□ 0.23
CSMD1-205ENST00000519623 C21orf2O43822 256 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms